FFCP PHASE1:Hg19::chr22:37976067..37976079,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3957|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6562|TSSclassifier=S|UniProt=P05162|association_with_transcript=7bp_to_ENST00000215886_5end|coexpression_cluster_id=C303|description=CAGE_peak_3_at_LGALS2_5end|id=chr22:37976067..37976079,-|ontology_enrichment_celltype=CL:0002057!6.39e-54!42;CL:0000860!2.32e-49!45;CL:0002009!2.73e-44!65;CL:0002194!5.19e-44!63;CL:0000576!5.19e-44!63;CL:0000040!5.19e-44!63;CL:0000559!5.19e-44!63;CL:0000766!1.34e-43!76;CL:0000738!1.34e-42!140;CL:0000557!5.93e-41!71;CL:0002087!1.92e-40!119;CL:0000839!8.63e-40!70;CL:0002031!7.11e-36!124;CL:0000037!8.31e-35!172;CL:0000566!8.31e-35!172;CL:0000988!1.31e-31!182;CL:0002032!9.70e-31!165;CL:0000837!9.70e-31!165;CL:0000763!3.39e-30!112;CL:0000049!3.39e-30!112;CL:0002393!2.41e-11!9;CL:0002397!2.41e-11!9;CL:0000134!6.48e-08!358;CL:0002320!2.11e-07!365|ontology_enrichment_celltype_v019=CL:0000860;1.95e-51;33!CL:0002057;1.95e-51;33!CL:0000473;2.30e-42;39!CL:0000234;2.30e-42;39!CL:0000576;4.08e-36;48!CL:0000766;6.35e-26;69!CL:0002393;3.14e-18;6!CL:0002397;3.14e-18;6!CL:0002087;1.45e-15;104!CL:0000763;1.96e-12;100!CL:0000767;2.95e-10;3!CL:0000226;6.08e-10;3!CL:0000842;6.08e-10;3!CL:0000738;8.51e-10;136!CL:0000988;3.54e-07;177|ontology_enrichment_celltype_v019_2=CL:0000473,3.05e-69,48;CL:0000234,3.05e-69,48;CL:0000860,7.72e-67,42;CL:0002057,7.72e-67,42;CL:0002009,2.42e-54,61;CL:0000766,1.02e-53,72;CL:0002194,2.15e-53,59;CL:0000576,2.15e-53,59;CL:0000040,2.15e-53,59;CL:0000559,2.15e-53,59;CL:0000557,1.19e-48,67;CL:0000839,8.94e-47,66;CL:0000738,5.97e-45,136;CL:0002087,1.30e-41,115;CL:0002031,4.87e-35,120;CL:0000763,3.03e-34,108;CL:0000049,3.03e-34,108;CL:0000037,5.61e-34,168;CL:0000988,1.32e-31,177;CL:0002032,2.55e-29,161;CL:0000837,2.55e-29,161;CL:0002393,6.45e-12,9;CL:0002397,6.45e-12,9;CL:0000767,2.96e-10,3;CL:0000134,3.16e-10,354;CL:0000226,4.94e-10,3;CL:0000842,4.94e-10,3;CL:0002320,8.62e-10,361;CL:0000219,2.86e-08,386|ontology_enrichment_development_v019=CL:0002057;6.23e-47;42!CL:0000049;5.67e-10;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.22e-54!102;UBERON:0003061!1.22e-54!102;UBERON:0002193!1.89e-51!112;UBERON:0002371!3.86e-36!80;UBERON:0002405!7.52e-34!115;UBERON:0001474!1.68e-32!86;UBERON:0004765!2.47e-25!101;UBERON:0001434!2.47e-25!101;UBERON:0003081!3.65e-20!216;UBERON:0000178!9.03e-16!15;UBERON:0000179!9.03e-16!15;UBERON:0000463!9.03e-16!15;UBERON:0002204!7.15e-11!167;UBERON:0000926!3.11e-08!448;UBERON:0004120!3.11e-08!448;UBERON:0006603!3.11e-08!448|ontology_enrichment_uberon_v019=UBERON:0000178;4.09e-28;15!UBERON:0000179;4.09e-28;15!UBERON:0000463;4.09e-28;15!UBERON:0002390;4.80e-13;32!UBERON:0002193;2.95e-09;42|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.92e-63,98;UBERON:0003061,7.92e-63,98;UBERON:0002193,7.20e-61,108;UBERON:0002371,8.83e-42,76;UBERON:0002405,1.65e-38,93;UBERON:0001474,4.95e-38,82;UBERON:0004765,8.31e-34,90;UBERON:0001434,1.79e-29,100;UBERON:0000178,3.29e-28,15;UBERON:0000179,3.29e-28,15;UBERON:0000463,3.29e-28,15;UBERON:0003081,3.39e-25,203;UBERON:0002204,6.82e-14,167;UBERON:0000926,7.72e-12,315;UBERON:0004120,7.72e-12,315;UBERON:0006603,7.72e-12,315;UBERON:0002384,3.36e-09,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,22.4217637803875,4.98978217526377,4.33485145285013,0,0,0,0,0,0.293600439334847,3.32397245119126,4.61252229181326,2.38711957787437,0,0.32389366601898,0.257575567634187,2.03557534291391,2.26725566213286,0.970336244751265,0.464858073811369,0.822335776043652,1.54853185447552,3.45230870786581,3.07392847834921,1.18241114944293,2.75796544589295,0.645484683583826,2.70852973188684,1.31769637679823,1.09162460023138,1.57306439111559,3.06083892370903,2.56743221660875,2.55734850319616,0.989553900560148,1.39624560335142,0,2.32167390902867,1.70215567407342,1.86846674698672,3.01498398308092,2.60741459210101,3.25783267057675,3.02699751316684,1.47311054395026,1.58231193720442,3.59133986730301,7.01594189884644,19.9175713232957,14.3780647867514,24.92936421169,13.3402236958577,0.570025487482497,0,0.730656615058536,0,0,0.889509253863555,2.56038133539904,0,1.72425731986345,0.661044872784862,0,0,0,0.382273228125229,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95569624297229,0,0,3.01150238155546,1.79181255616186,2.49861453104692,2.8413270245282,2.46338399076314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.174129737299267,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.14809383306323,1.93220510975347,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3957 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6562 | |||
|TSSclassifier=S | |||
|UniProt=P05162 | |||
|association_with_transcript=7bp_to_ENST00000215886_5end | |||
|coexpression_cluster_id=C303 | |||
|description=CAGE_peak_3_at_LGALS2_5end | |||
|id=chr22:37976067..37976079,- | |||
|ontology_enrichment_celltype=CL:0002057!6.39e-54!42;CL:0000860!2.32e-49!45;CL:0002009!2.73e-44!65;CL:0002194!5.19e-44!63;CL:0000576!5.19e-44!63;CL:0000040!5.19e-44!63;CL:0000559!5.19e-44!63;CL:0000766!1.34e-43!76;CL:0000738!1.34e-42!140;CL:0000557!5.93e-41!71;CL:0002087!1.92e-40!119;CL:0000839!8.63e-40!70;CL:0002031!7.11e-36!124;CL:0000037!8.31e-35!172;CL:0000566!8.31e-35!172;CL:0000988!1.31e-31!182;CL:0002032!9.70e-31!165;CL:0000837!9.70e-31!165;CL:0000763!3.39e-30!112;CL:0000049!3.39e-30!112;CL:0002393!2.41e-11!9;CL:0002397!2.41e-11!9;CL:0000134!6.48e-08!358;CL:0002320!2.11e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.95e-51;33!CL:0002057;1.95e-51;33!CL:0000473;2.30e-42;39!CL:0000234;2.30e-42;39!CL:0000576;4.08e-36;48!CL:0000766;6.35e-26;69!CL:0002393;3.14e-18;6!CL:0002397;3.14e-18;6!CL:0002087;1.45e-15;104!CL:0000763;1.96e-12;100!CL:0000767;2.95e-10;3!CL:0000226;6.08e-10;3!CL:0000842;6.08e-10;3!CL:0000738;8.51e-10;136!CL:0000988;3.54e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.05e-69,48;CL:0000234,3.05e-69,48;CL:0000860,7.72e-67,42;CL:0002057,7.72e-67,42;CL:0002009,2.42e-54,61;CL:0000766,1.02e-53,72;CL:0002194,2.15e-53,59;CL:0000576,2.15e-53,59;CL:0000040,2.15e-53,59;CL:0000559,2.15e-53,59;CL:0000557,1.19e-48,67;CL:0000839,8.94e-47,66;CL:0000738,5.97e-45,136;CL:0002087,1.30e-41,115;CL:0002031,4.87e-35,120;CL:0000763,3.03e-34,108;CL:0000049,3.03e-34,108;CL:0000037,5.61e-34,168;CL:0000988,1.32e-31,177;CL:0002032,2.55e-29,161;CL:0000837,2.55e-29,161;CL:0002393,6.45e-12,9;CL:0002397,6.45e-12,9;CL:0000767,2.96e-10,3;CL:0000134,3.16e-10,354;CL:0000226,4.94e-10,3;CL:0000842,4.94e-10,3;CL:0002320,8.62e-10,361;CL:0000219,2.86e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.23e-47;42!CL:0000049;5.67e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.22e-54!102;UBERON:0003061!1.22e-54!102;UBERON:0002193!1.89e-51!112;UBERON:0002371!3.86e-36!80;UBERON:0002405!7.52e-34!115;UBERON:0001474!1.68e-32!86;UBERON:0004765!2.47e-25!101;UBERON:0001434!2.47e-25!101;UBERON:0003081!3.65e-20!216;UBERON:0000178!9.03e-16!15;UBERON:0000179!9.03e-16!15;UBERON:0000463!9.03e-16!15;UBERON:0002204!7.15e-11!167;UBERON:0000926!3.11e-08!448;UBERON:0004120!3.11e-08!448;UBERON:0006603!3.11e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.09e-28;15!UBERON:0000179;4.09e-28;15!UBERON:0000463;4.09e-28;15!UBERON:0002390;4.80e-13;32!UBERON:0002193;2.95e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.92e-63,98;UBERON:0003061,7.92e-63,98;UBERON:0002193,7.20e-61,108;UBERON:0002371,8.83e-42,76;UBERON:0002405,1.65e-38,93;UBERON:0001474,4.95e-38,82;UBERON:0004765,8.31e-34,90;UBERON:0001434,1.79e-29,100;UBERON:0000178,3.29e-28,15;UBERON:0000179,3.29e-28,15;UBERON:0000463,3.29e-28,15;UBERON:0003081,3.39e-25,203;UBERON:0002204,6.82e-14,167;UBERON:0000926,7.72e-12,315;UBERON:0004120,7.72e-12,315;UBERON:0006603,7.72e-12,315;UBERON:0002384,3.36e-09,371 | |||
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|short_description=p3@LGALS2 | |||
}} |
Revision as of 11:53, 12 September 2013
Short description: | p3@LGALS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LGALS2_5end |
Coexpression cluster: | C303_CD14_Basophils_Peripheral_Eosinophils_CD14CD16_Neutrophils_Whole |
Association with transcript: | 7bp_to_ENST00000215886_5end |
EntrezGene: | LGALS2 |
HGNC: | 6562 |
UniProt: | P05162 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.05e-69 | 48 |
phagocyte | 3.05e-69 | 48 |
classical monocyte | 7.72e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.72e-67 | 42 |
macrophage dendritic cell progenitor | 2.42e-54 | 61 |
myeloid leukocyte | 1.02e-53 | 72 |
monopoietic cell | 2.15e-53 | 59 |
monocyte | 2.15e-53 | 59 |
monoblast | 2.15e-53 | 59 |
promonocyte | 2.15e-53 | 59 |
granulocyte monocyte progenitor cell | 1.19e-48 | 67 |
myeloid lineage restricted progenitor cell | 8.94e-47 | 66 |
leukocyte | 5.97e-45 | 136 |
nongranular leukocyte | 1.30e-41 | 115 |
hematopoietic lineage restricted progenitor cell | 4.87e-35 | 120 |
myeloid cell | 3.03e-34 | 108 |
common myeloid progenitor | 3.03e-34 | 108 |
hematopoietic stem cell | 5.61e-34 | 168 |
hematopoietic cell | 1.32e-31 | 177 |
hematopoietic oligopotent progenitor cell | 2.55e-29 | 161 |
hematopoietic multipotent progenitor cell | 2.55e-29 | 161 |
intermediate monocyte | 6.45e-12 | 9 |
CD14-positive, CD16-positive monocyte | 6.45e-12 | 9 |
basophil | 2.96e-10 | 3 |
mesenchymal cell | 3.16e-10 | 354 |
single nucleate cell | 4.94e-10 | 3 |
mononuclear cell | 4.94e-10 | 3 |
connective tissue cell | 8.62e-10 | 361 |
motile cell | 2.86e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.92e-63 | 98 |
blood island | 7.92e-63 | 98 |
hemolymphoid system | 7.20e-61 | 108 |
bone marrow | 8.83e-42 | 76 |
immune system | 1.65e-38 | 93 |
bone element | 4.95e-38 | 82 |
skeletal element | 8.31e-34 | 90 |
skeletal system | 1.79e-29 | 100 |
blood | 3.29e-28 | 15 |
haemolymphatic fluid | 3.29e-28 | 15 |
organism substance | 3.29e-28 | 15 |
lateral plate mesoderm | 3.39e-25 | 203 |
musculoskeletal system | 6.82e-14 | 167 |
mesoderm | 7.72e-12 | 315 |
mesoderm-derived structure | 7.72e-12 | 315 |
presumptive mesoderm | 7.72e-12 | 315 |
connective tissue | 3.36e-09 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.