FFCP PHASE1:Hg19::chr21:45705703..45705711,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=326|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=360|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000530812_5end|coexpression_cluster_id=C45|description=CAGE_peak_3_at_AIRE_5end|id=chr21:45705703..45705711,+|ontology_enrichment_celltype=CL:0000039!3.21e-13!7;CL:0000586!3.21e-13!7|ontology_enrichment_celltype_v019=CL:0000039;7.65e-64;7!CL:0000586;7.65e-64;7|ontology_enrichment_celltype_v019_2=CL:0000039,6.87e-64,7;CL:0000586,6.87e-64,7|ontology_enrichment_development_v019=UBERON:0009117;4.50e-45;10!UBERON:0005564;4.50e-45;10!UBERON:0006603;1.98e-09;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22|ontology_enrichment_disease_v019_2=DOID:3095,3.99e-21,22;DOID:2994,3.99e-21,22|ontology_enrichment_uberon=UBERON:0000369!2.04e-21!4;UBERON:0002435!2.04e-21!4;UBERON:0000204!2.04e-21!4;UBERON:0010082!2.04e-21!4;UBERON:0002308!1.44e-20!9;UBERON:0000125!1.44e-20!9;UBERON:0001893!4.74e-19!34;UBERON:0009663!1.01e-18!7;UBERON:0001869!4.56e-17!32;UBERON:0005383!8.48e-17!3;UBERON:0005382!8.48e-17!3;UBERON:0002791!1.70e-16!33;UBERON:0002020!5.25e-16!34;UBERON:0003528!5.25e-16!34;UBERON:0002780!1.77e-15!41;UBERON:0001890!1.77e-15!41;UBERON:0006240!1.77e-15!41;UBERON:0003080!4.59e-15!42;UBERON:0001049!1.00e-14!57;UBERON:0005068!1.00e-14!57;UBERON:0006241!1.00e-14!57;UBERON:0007135!1.00e-14!57;UBERON:0002420!1.61e-14!9;UBERON:0007245!1.61e-14!9;UBERON:0010009!1.61e-14!9;UBERON:0010011!1.61e-14!9;UBERON:0000454!1.61e-14!9;UBERON:0000200!3.10e-14!6;UBERON:0002616!3.87e-14!59;UBERON:0005743!2.31e-13!86;UBERON:0000955!2.43e-13!69;UBERON:0006238!2.43e-13!69;UBERON:0001017!2.10e-12!82;UBERON:0007023!3.89e-12!115;UBERON:0001873!7.23e-12!2;UBERON:0010122!7.23e-12!2;UBERON:0003075!7.40e-12!86;UBERON:0007284!7.40e-12!86;UBERON:0000073!8.67e-12!94;UBERON:0001016!8.67e-12!94;UBERON:0000473!1.41e-11!8;UBERON:0003056!1.61e-11!61;UBERON:0002346!3.45e-11!90;UBERON:0000153!3.69e-10!129;UBERON:0007811!3.69e-10!129;UBERON:0003135!1.97e-08!11;UBERON:0000033!2.11e-08!123;UBERON:0002771!3.43e-08!3;UBERON:0007195!4.85e-07!1;UBERON:0007029!5.75e-07!1|ontology_enrichment_uberon_v019=UBERON:0000473;5.02e-56;8!UBERON:0007195;5.12e-50;1!UBERON:0003135;4.36e-41;11!UBERON:0000991;4.59e-22;21!UBERON:0003101;4.13e-21;22!UBERON:0000079;4.13e-21;22!UBERON:0002323;9.75e-11;45!UBERON:0003133;6.26e-10;44!UBERON:0000922;1.21e-08;49!UBERON:0002553;2.41e-07;52!UBERON:0005156;2.78e-07;59!UBERON:0000990;2.78e-07;59|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.57e-56,8;UBERON:0007195,6.58e-50,1;UBERON:0003135,4.07e-41,11;UBERON:0000991,4.43e-22,21;UBERON:0009196,4.43e-22,21;UBERON:0009117,4.43e-22,21;UBERON:0005564,4.43e-22,21;UBERON:0004176,3.99e-21,22;UBERON:0003101,3.99e-21,22;UBERON:0000079,3.99e-21,22;UBERON:0002323,1.31e-10,46;UBERON:0003133,3.32e-10,48;UBERON:0004458,5.14e-10,49;UBERON:0003886,3.61e-09,54;UBERON:0005156,1.83e-08,59;UBERON:0000990,1.83e-08,59;UBERON:0002553,3.25e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0.161475645631851,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=326 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=360 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000530812_5end | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_3_at_AIRE_5end | |||
|id=chr21:45705703..45705711,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.21e-13!7;CL:0000586!3.21e-13!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;7.65e-64;7!CL:0000586;7.65e-64;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.87e-64,7;CL:0000586,6.87e-64,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.50e-45;10!UBERON:0005564;4.50e-45;10!UBERON:0006603;1.98e-09;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;4.13e-21;22!DOID:2994;4.13e-21;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.99e-21,22;DOID:2994,3.99e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0000369!2.04e-21!4;UBERON:0002435!2.04e-21!4;UBERON:0000204!2.04e-21!4;UBERON:0010082!2.04e-21!4;UBERON:0002308!1.44e-20!9;UBERON:0000125!1.44e-20!9;UBERON:0001893!4.74e-19!34;UBERON:0009663!1.01e-18!7;UBERON:0001869!4.56e-17!32;UBERON:0005383!8.48e-17!3;UBERON:0005382!8.48e-17!3;UBERON:0002791!1.70e-16!33;UBERON:0002020!5.25e-16!34;UBERON:0003528!5.25e-16!34;UBERON:0002780!1.77e-15!41;UBERON:0001890!1.77e-15!41;UBERON:0006240!1.77e-15!41;UBERON:0003080!4.59e-15!42;UBERON:0001049!1.00e-14!57;UBERON:0005068!1.00e-14!57;UBERON:0006241!1.00e-14!57;UBERON:0007135!1.00e-14!57;UBERON:0002420!1.61e-14!9;UBERON:0007245!1.61e-14!9;UBERON:0010009!1.61e-14!9;UBERON:0010011!1.61e-14!9;UBERON:0000454!1.61e-14!9;UBERON:0000200!3.10e-14!6;UBERON:0002616!3.87e-14!59;UBERON:0005743!2.31e-13!86;UBERON:0000955!2.43e-13!69;UBERON:0006238!2.43e-13!69;UBERON:0001017!2.10e-12!82;UBERON:0007023!3.89e-12!115;UBERON:0001873!7.23e-12!2;UBERON:0010122!7.23e-12!2;UBERON:0003075!7.40e-12!86;UBERON:0007284!7.40e-12!86;UBERON:0000073!8.67e-12!94;UBERON:0001016!8.67e-12!94;UBERON:0000473!1.41e-11!8;UBERON:0003056!1.61e-11!61;UBERON:0002346!3.45e-11!90;UBERON:0000153!3.69e-10!129;UBERON:0007811!3.69e-10!129;UBERON:0003135!1.97e-08!11;UBERON:0000033!2.11e-08!123;UBERON:0002771!3.43e-08!3;UBERON:0007195!4.85e-07!1;UBERON:0007029!5.75e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.02e-56;8!UBERON:0007195;5.12e-50;1!UBERON:0003135;4.36e-41;11!UBERON:0000991;4.59e-22;21!UBERON:0003101;4.13e-21;22!UBERON:0000079;4.13e-21;22!UBERON:0002323;9.75e-11;45!UBERON:0003133;6.26e-10;44!UBERON:0000922;1.21e-08;49!UBERON:0002553;2.41e-07;52!UBERON:0005156;2.78e-07;59!UBERON:0000990;2.78e-07;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.57e-56,8;UBERON:0007195,6.58e-50,1;UBERON:0003135,4.07e-41,11;UBERON:0000991,4.43e-22,21;UBERON:0009196,4.43e-22,21;UBERON:0009117,4.43e-22,21;UBERON:0005564,4.43e-22,21;UBERON:0004176,3.99e-21,22;UBERON:0003101,3.99e-21,22;UBERON:0000079,3.99e-21,22;UBERON:0002323,1.31e-10,46;UBERON:0003133,3.32e-10,48;UBERON:0004458,5.14e-10,49;UBERON:0003886,3.61e-09,54;UBERON:0005156,1.83e-08,59;UBERON:0000990,1.83e-08,59;UBERON:0002553,3.25e-08,61 | |||
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|short_description=p3@AIRE | |||
}} |
Revision as of 10:40, 12 September 2013
Short description: | p3@AIRE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_AIRE_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -9bp_to_ENST00000530812_5end |
EntrezGene: | AIRE |
HGNC: | 360 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.87e-64 | 7 |
germ cell | 6.87e-64 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 4.57e-56 | 8 |
stroma of bone marrow | 6.58e-50 | 1 |
male reproductive organ | 4.07e-41 | 11 |
gonad | 4.43e-22 | 21 |
indifferent external genitalia | 4.43e-22 | 21 |
indifferent gonad | 4.43e-22 | 21 |
gonad primordium | 4.43e-22 | 21 |
external genitalia | 3.99e-21 | 22 |
male organism | 3.99e-21 | 22 |
male reproductive system | 3.99e-21 | 22 |
body cavity | 1.31e-10 | 46 |
reproductive organ | 3.32e-10 | 48 |
body cavity or lining | 5.14e-10 | 49 |
body cavity precursor | 3.61e-09 | 54 |
reproductive structure | 1.83e-08 | 59 |
reproductive system | 1.83e-08 | 59 |
anatomical cavity | 3.25e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.99e-21 | 22 |
germ cell cancer | 3.99e-21 | 22 |
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