FFCP PHASE1:Hg19::chr21:44496441..44496466,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=875|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1550|TSSclassifier=S|UniProt=P35520|association_with_transcript=5bp_to_ENST00000359624,NM_001178008,NM_001178009,uc002zcv.2,uc002zcw.3_5end|description=CAGE_peak_5_at_CBS_5end|id=chr21:44496441..44496466,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;2.47e-07;3!UBERON:0006215;2.88e-07;3!UBERON:0006238;6.21e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.59e-21!94;UBERON:0001016!6.59e-21!94;UBERON:0005743!8.97e-19!86;UBERON:0001017!1.58e-18!82;UBERON:0001049!6.13e-17!57;UBERON:0005068!6.13e-17!57;UBERON:0006241!6.13e-17!57;UBERON:0007135!6.13e-17!57;UBERON:0000955!6.61e-16!69;UBERON:0006238!6.61e-16!69;UBERON:0002346!1.91e-14!90;UBERON:0003075!2.60e-14!86;UBERON:0007284!2.60e-14!86;UBERON:0000924!9.05e-14!173;UBERON:0006601!9.05e-14!173;UBERON:0004121!1.65e-13!169;UBERON:0002616!3.08e-13!59;UBERON:0001893!6.85e-13!34;UBERON:0002791!2.38e-12!33;UBERON:0002020!2.40e-12!34;UBERON:0003528!2.40e-12!34;UBERON:0001869!8.27e-12!32;UBERON:0000119!4.10e-11!312;UBERON:0002780!1.51e-10!41;UBERON:0001890!1.51e-10!41;UBERON:0006240!1.51e-10!41;UBERON:0000483!1.79e-10!309;UBERON:0000956!2.25e-10!25;UBERON:0000203!2.25e-10!25;UBERON:0003080!5.14e-10!42;UBERON:0003076!5.76e-09!15;UBERON:0003057!5.76e-09!15;UBERON:0002619!1.04e-08!22;UBERON:0000475!1.11e-08!365;UBERON:0000025!2.00e-08!194;UBERON:0000033!2.17e-08!123;UBERON:0003056!2.39e-08!61;UBERON:0000468!3.14e-08!659;UBERON:0004732!7.45e-08!13;UBERON:0001950!7.83e-08!20;UBERON:0000467!8.86e-08!625;UBERON:0000480!1.17e-07!626;UBERON:0000923!3.31e-07!604;UBERON:0005291!3.31e-07!604;UBERON:0006598!3.31e-07!604;UBERON:0002532!3.31e-07!604;UBERON:0000922!4.01e-07!612;UBERON:0004733!4.09e-07!12;UBERON:0002028!4.09e-07!12;UBERON:0007277!4.09e-07!12;UBERON:0000153!4.26e-07!129;UBERON:0007811!4.26e-07!129;UBERON:0002050!4.33e-07!605;UBERON:0005423!4.33e-07!605;UBERON:0000062!4.41e-07!511|ontology_enrichment_uberon_v019=UBERON:0000956;9.44e-08;25!UBERON:0000203;9.44e-08;25!UBERON:0001950;2.50e-07;20!UBERON:0001016;5.73e-07;83|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-10,81;UBERON:0001016,1.34e-10,89;UBERON:0000955,7.61e-10,68;UBERON:0006238,7.61e-10,68;UBERON:0003075,6.75e-08,82;UBERON:0007284,6.75e-08,82;UBERON:0000956,1.16e-07,25;UBERON:0000203,1.16e-07,25;UBERON:0001049,1.36e-07,56;UBERON:0005068,1.36e-07,56;UBERON:0006241,1.36e-07,56;UBERON:0007135,1.36e-07,56;UBERON:0002346,2.10e-07,86;UBERON:0001950,3.21e-07,20;UBERON:0004121,6.30e-07,171;UBERON:0000924,6.30e-07,171;UBERON:0006601,6.30e-07,171|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0.218441372130172,0.263766978228454,0.247532705920093,0,0,0,0,0.487932798790507,0.123121058076788,0.408001382488506,0.940364164434263,1.43117993565528,0.684372125364421,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0,0,0,0.486634870302636,0.0945348171640679,0,0,0.327447688744282,0,0,0.324547393654683,0.348259474598534,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0.949265659568129,0.916008719652036,0,0,0,0,0.12663051166458,0.794455084879313,0.286836620748814,0,0,0,0,0,0.269421344139376,0.163461903113459,0.302714855289863,0,0.937285727335186,0.624320153660641,0,0.298897361103602,0,0.485618833104395,0.280901613404497,0.408308342509787,0.491337269247072,1.13658359293342,0,0.494533858557114,0.910161361938026,0,0.673344455816265,0.250237039743928,0,0,0.30648779579902,0.45071417671979,0,0.179389635688862,0,0,0,0,0.772921620136887,0,1.35021065793013,0.292311015483596,1.00973509697646,0.368199594569197,0.646584227275248,0,0.10075209822764,0.169560592310488,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,1.26755034821831,1.96565443335525,0.590789906681404,0,0.245976877086227,0,0.219500570817251,0,0,0,1.95484983186195,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0,0,0,0,0.381988425558278,0,1.71072446022705,0,0,0,0.448524337381443,0.87192013766656,0.1466765716419,0,0,0,0.531876233169741,2.08014873822732,0.514414748524284,0,0,0.428933980974443,0.542621605391443,0,0,0.355391948742546,0,0,0,0,1.2162378064119,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0.542530047399471,0.207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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=875 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1550 | |||
|TSSclassifier=S | |||
|UniProt=P35520 | |||
|association_with_transcript=5bp_to_ENST00000359624,NM_001178008,NM_001178009,uc002zcv.2,uc002zcw.3_5end | |||
|description=CAGE_peak_5_at_CBS_5end | |||
|id=chr21:44496441..44496466,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.47e-07;3!UBERON:0006215;2.88e-07;3!UBERON:0006238;6.21e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.59e-21!94;UBERON:0001016!6.59e-21!94;UBERON:0005743!8.97e-19!86;UBERON:0001017!1.58e-18!82;UBERON:0001049!6.13e-17!57;UBERON:0005068!6.13e-17!57;UBERON:0006241!6.13e-17!57;UBERON:0007135!6.13e-17!57;UBERON:0000955!6.61e-16!69;UBERON:0006238!6.61e-16!69;UBERON:0002346!1.91e-14!90;UBERON:0003075!2.60e-14!86;UBERON:0007284!2.60e-14!86;UBERON:0000924!9.05e-14!173;UBERON:0006601!9.05e-14!173;UBERON:0004121!1.65e-13!169;UBERON:0002616!3.08e-13!59;UBERON:0001893!6.85e-13!34;UBERON:0002791!2.38e-12!33;UBERON:0002020!2.40e-12!34;UBERON:0003528!2.40e-12!34;UBERON:0001869!8.27e-12!32;UBERON:0000119!4.10e-11!312;UBERON:0002780!1.51e-10!41;UBERON:0001890!1.51e-10!41;UBERON:0006240!1.51e-10!41;UBERON:0000483!1.79e-10!309;UBERON:0000956!2.25e-10!25;UBERON:0000203!2.25e-10!25;UBERON:0003080!5.14e-10!42;UBERON:0003076!5.76e-09!15;UBERON:0003057!5.76e-09!15;UBERON:0002619!1.04e-08!22;UBERON:0000475!1.11e-08!365;UBERON:0000025!2.00e-08!194;UBERON:0000033!2.17e-08!123;UBERON:0003056!2.39e-08!61;UBERON:0000468!3.14e-08!659;UBERON:0004732!7.45e-08!13;UBERON:0001950!7.83e-08!20;UBERON:0000467!8.86e-08!625;UBERON:0000480!1.17e-07!626;UBERON:0000923!3.31e-07!604;UBERON:0005291!3.31e-07!604;UBERON:0006598!3.31e-07!604;UBERON:0002532!3.31e-07!604;UBERON:0000922!4.01e-07!612;UBERON:0004733!4.09e-07!12;UBERON:0002028!4.09e-07!12;UBERON:0007277!4.09e-07!12;UBERON:0000153!4.26e-07!129;UBERON:0007811!4.26e-07!129;UBERON:0002050!4.33e-07!605;UBERON:0005423!4.33e-07!605;UBERON:0000062!4.41e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;9.44e-08;25!UBERON:0000203;9.44e-08;25!UBERON:0001950;2.50e-07;20!UBERON:0001016;5.73e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-10,81;UBERON:0001016,1.34e-10,89;UBERON:0000955,7.61e-10,68;UBERON:0006238,7.61e-10,68;UBERON:0003075,6.75e-08,82;UBERON:0007284,6.75e-08,82;UBERON:0000956,1.16e-07,25;UBERON:0000203,1.16e-07,25;UBERON:0001049,1.36e-07,56;UBERON:0005068,1.36e-07,56;UBERON:0006241,1.36e-07,56;UBERON:0007135,1.36e-07,56;UBERON:0002346,2.10e-07,86;UBERON:0001950,3.21e-07,20;UBERON:0004121,6.30e-07,171;UBERON:0000924,6.30e-07,171;UBERON:0006601,6.30e-07,171 | |||
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| |||
|short_description=p5@CBS | |||
}} |
Revision as of 10:34, 12 September 2013
Short description: | p5@CBS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CBS_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000359624, NM_001178008, NM_001178009, uc002zcv.2, uc002zcw.3_5end |
EntrezGene: | CBS |
HGNC: | 1550 |
UniProt: | P35520 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.29e-10 | 81 |
nervous system | 1.34e-10 | 89 |
brain | 7.61e-10 | 68 |
future brain | 7.61e-10 | 68 |
neural plate | 6.75e-08 | 82 |
presumptive neural plate | 6.75e-08 | 82 |
cerebral cortex | 1.16e-07 | 25 |
pallium | 1.16e-07 | 25 |
neural tube | 1.36e-07 | 56 |
neural rod | 1.36e-07 | 56 |
future spinal cord | 1.36e-07 | 56 |
neural keel | 1.36e-07 | 56 |
neurectoderm | 2.10e-07 | 86 |
neocortex | 3.21e-07 | 20 |
ectoderm-derived structure | 6.30e-07 | 171 |
ectoderm | 6.30e-07 | 171 |
presumptive ectoderm | 6.30e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.