FFCP PHASE1:Hg19::chr20:62368002..62368022,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54923|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26016|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000480139,ENST00000487026_5end|coexpression_cluster_id=C18|description=CAGE_peak_1_at_LIME1_5end|id=chr20:62368002..62368022,+|ontology_enrichment_celltype=CL:0000738!3.22e-44!140;CL:0002087!1.91e-39!119;CL:0000542!1.85e-37!53;CL:0000051!1.85e-37!53;CL:0000838!7.28e-37!52;CL:0000037!2.03e-36!172;CL:0000566!2.03e-36!172;CL:0002031!1.12e-35!124;CL:0000988!4.86e-32!182;CL:0002032!1.30e-31!165;CL:0000837!1.30e-31!165;CL:0000084!4.00e-19!25;CL:0000827!4.00e-19!25;CL:0000791!1.13e-17!18;CL:0000789!1.13e-17!18;CL:0002420!1.13e-17!18;CL:0002419!1.13e-17!18;CL:0000790!1.13e-17!18;CL:0000945!3.33e-16!24;CL:0000826!3.33e-16!24;CL:0000625!1.53e-11!11;CL:0000236!2.25e-10!14;CL:0000766!3.91e-09!76;CL:0002057!4.89e-09!42;CL:0000860!8.11e-08!45;CL:0000839!3.87e-07!70;CL:0000624!3.95e-07!6;CL:0002194!4.37e-07!63;CL:0000576!4.37e-07!63;CL:0000040!4.37e-07!63;CL:0000559!4.37e-07!63;CL:0002009!5.00e-07!65;CL:0000557!5.42e-07!71|ontology_enrichment_celltype_v019=CL:0000542;4.23e-27;53!CL:0000791;5.36e-25;18!CL:0000789;5.36e-25;18!CL:0002419;5.36e-25;18!CL:0000084;1.30e-24;25!CL:0000945;4.03e-21;24!CL:0000625;4.62e-16;11!CL:0002087;5.14e-12;104!CL:0000236;7.63e-12;13!CL:0000624;1.15e-09;6!CL:0000738;1.15e-08;136|ontology_enrichment_celltype_v019_2=CL:0000542,1.61e-49,53;CL:0000051,1.61e-49,53;CL:0000838,1.19e-48,52;CL:0000738,5.06e-41,136;CL:0002087,1.15e-36,115;CL:0000037,3.52e-31,168;CL:0002031,5.94e-29,120;CL:0000988,2.88e-28,177;CL:0002032,1.37e-25,161;CL:0000837,1.37e-25,161;CL:0000791,5.45e-25,18;CL:0000789,5.45e-25,18;CL:0002420,5.45e-25,18;CL:0002419,5.45e-25,18;CL:0000790,5.45e-25,18;CL:0000084,1.34e-24,25;CL:0000827,1.34e-24,25;CL:0000945,3.87e-21,24;CL:0000826,3.87e-21,24;CL:0000625,4.63e-16,11;CL:0000236,1.16e-12,14;CL:0000624,1.16e-09,6|ontology_enrichment_development_v019=CL:0000051;4.23e-27;53!CL:0000790;5.36e-25;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.41e-19!115;UBERON:0002390!3.54e-13!102;UBERON:0003061!3.54e-13!102;UBERON:0002193!1.04e-11!112;UBERON:0000178!5.90e-08!15;UBERON:0000179!5.90e-08!15;UBERON:0000463!5.90e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.27e-11;15!UBERON:0000179;1.27e-11;15!UBERON:0000463;1.27e-11;15!UBERON:0002390;1.08e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.28e-11,15;UBERON:0000179,1.28e-11,15;UBERON:0000463,1.28e-11,15;UBERON:0002390,9.51e-09,98;UBERON:0003061,9.51e-09,98;UBERON:0002193,2.92e-08,108|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03003332881152,8.37426012389447,9.68142610158255,24.388585164632,43.372721984985,12.3852898652861,0,0,0,4.41563043307719,2.55904618477359,6.16560922603179,17.1738576644882,14.8402891127905,20.8330435887218,3.35873211359887,10.0407036465884,2.57575567634187,0.726991193897824,0.755751887377619,0.242584061187816,0.232429036905685,0.411167888021826,0.929119112685311,0.863077176966451,1.0246428261164,0.47296445977717,1.72372840368309,0,0,1.12945403725563,0.818718450173537,0.224723484445085,0.918251677112708,1.28371610830437,1.27867425159808,0.659702600373432,0.997318288108159,0,1.16083695451434,1.13477044938228,0.622822248995575,1.25624332628372,2.08593167368081,0.217188844705117,1.21079900526674,1.10483290796269,0.316462387440884,0,0.212604299965044,0,0.112328631146495,0.300353785683013,0,0,0.59675003159727,0.182664153764634,21.1195493353587,12.561188059029,16.9006758234075,28.1641946893895,11.2110876370083,18.9668305184979,21.8144808019005,20.989182599778,6.26134266020393,12.9192181661607,10.3213771593812,6.60856642895129,22.980851082243,9.74521113667785,85.3720402294036,165.064520354649,173.322063656586,137.928858697309,164.26482238333,180.857061790668,196.77499569199,115.532643789925,242.460661851791,278.246571597028,175.210099855965,159.089419099289,145.536409919504,59.6909593711344,76.2726049088942,69.5527405764126,137.165070924906,133.235332388677,148.440443803067,153.080921984412,216.136358391484,279.025485731896,114.111881100796,190.50211776581,221.368374311182,193.892217067468,138.227959313395,122.099227041315,173.653709907761,168.58540345534,179.005903328788,89.3117872485565,129.975935150785,89.0670083879214,0,0,0,0,0,0,0,0,0,0,0.702678285545008,4.45328856692223,0.728590576585084,0,0.324547393654683,1.91542711029194,1.32957960518865,156.68834016861,147.002692070493,138.925105497257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,11.6334079244498,0.436094052142534,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.7589600983309,6.87979051674338,2.36315962672562,42.8219206432211,0,0,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0.4146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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54923 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000480139,ENST00000487026_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_LIME1_5end | |||
|id=chr20:62368002..62368022,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.22e-44!140;CL:0002087!1.91e-39!119;CL:0000542!1.85e-37!53;CL:0000051!1.85e-37!53;CL:0000838!7.28e-37!52;CL:0000037!2.03e-36!172;CL:0000566!2.03e-36!172;CL:0002031!1.12e-35!124;CL:0000988!4.86e-32!182;CL:0002032!1.30e-31!165;CL:0000837!1.30e-31!165;CL:0000084!4.00e-19!25;CL:0000827!4.00e-19!25;CL:0000791!1.13e-17!18;CL:0000789!1.13e-17!18;CL:0002420!1.13e-17!18;CL:0002419!1.13e-17!18;CL:0000790!1.13e-17!18;CL:0000945!3.33e-16!24;CL:0000826!3.33e-16!24;CL:0000625!1.53e-11!11;CL:0000236!2.25e-10!14;CL:0000766!3.91e-09!76;CL:0002057!4.89e-09!42;CL:0000860!8.11e-08!45;CL:0000839!3.87e-07!70;CL:0000624!3.95e-07!6;CL:0002194!4.37e-07!63;CL:0000576!4.37e-07!63;CL:0000040!4.37e-07!63;CL:0000559!4.37e-07!63;CL:0002009!5.00e-07!65;CL:0000557!5.42e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.23e-27;53!CL:0000791;5.36e-25;18!CL:0000789;5.36e-25;18!CL:0002419;5.36e-25;18!CL:0000084;1.30e-24;25!CL:0000945;4.03e-21;24!CL:0000625;4.62e-16;11!CL:0002087;5.14e-12;104!CL:0000236;7.63e-12;13!CL:0000624;1.15e-09;6!CL:0000738;1.15e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.61e-49,53;CL:0000051,1.61e-49,53;CL:0000838,1.19e-48,52;CL:0000738,5.06e-41,136;CL:0002087,1.15e-36,115;CL:0000037,3.52e-31,168;CL:0002031,5.94e-29,120;CL:0000988,2.88e-28,177;CL:0002032,1.37e-25,161;CL:0000837,1.37e-25,161;CL:0000791,5.45e-25,18;CL:0000789,5.45e-25,18;CL:0002420,5.45e-25,18;CL:0002419,5.45e-25,18;CL:0000790,5.45e-25,18;CL:0000084,1.34e-24,25;CL:0000827,1.34e-24,25;CL:0000945,3.87e-21,24;CL:0000826,3.87e-21,24;CL:0000625,4.63e-16,11;CL:0000236,1.16e-12,14;CL:0000624,1.16e-09,6 | |||
|ontology_enrichment_development_v019=CL:0000051;4.23e-27;53!CL:0000790;5.36e-25;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.41e-19!115;UBERON:0002390!3.54e-13!102;UBERON:0003061!3.54e-13!102;UBERON:0002193!1.04e-11!112;UBERON:0000178!5.90e-08!15;UBERON:0000179!5.90e-08!15;UBERON:0000463!5.90e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.27e-11;15!UBERON:0000179;1.27e-11;15!UBERON:0000463;1.27e-11;15!UBERON:0002390;1.08e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.28e-11,15;UBERON:0000179,1.28e-11,15;UBERON:0000463,1.28e-11,15;UBERON:0002390,9.51e-09,98;UBERON:0003061,9.51e-09,98;UBERON:0002193,2.92e-08,108 | |||
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| |||
|short_description=p1@LIME1 | |||
}} |
Revision as of 09:38, 12 September 2013
Short description: | p1@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LIME1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000480139, ENST00000487026_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.61e-49 | 53 |
common lymphoid progenitor | 1.61e-49 | 53 |
lymphoid lineage restricted progenitor cell | 1.19e-48 | 52 |
leukocyte | 5.06e-41 | 136 |
nongranular leukocyte | 1.15e-36 | 115 |
hematopoietic stem cell | 3.52e-31 | 168 |
hematopoietic lineage restricted progenitor cell | 5.94e-29 | 120 |
hematopoietic cell | 2.88e-28 | 177 |
hematopoietic oligopotent progenitor cell | 1.37e-25 | 161 |
hematopoietic multipotent progenitor cell | 1.37e-25 | 161 |
mature alpha-beta T cell | 5.45e-25 | 18 |
alpha-beta T cell | 5.45e-25 | 18 |
immature T cell | 5.45e-25 | 18 |
mature T cell | 5.45e-25 | 18 |
immature alpha-beta T cell | 5.45e-25 | 18 |
T cell | 1.34e-24 | 25 |
pro-T cell | 1.34e-24 | 25 |
lymphocyte of B lineage | 3.87e-21 | 24 |
pro-B cell | 3.87e-21 | 24 |
CD8-positive, alpha-beta T cell | 4.63e-16 | 11 |
B cell | 1.16e-12 | 14 |
CD4-positive, alpha-beta T cell | 1.16e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 1.28e-11 | 15 |
haemolymphatic fluid | 1.28e-11 | 15 |
organism substance | 1.28e-11 | 15 |
hematopoietic system | 9.51e-09 | 98 |
blood island | 9.51e-09 | 98 |
hemolymphoid system | 2.92e-08 | 108 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.