FFCP PHASE1:Hg19::chr1:8763510..8763538,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=473|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9965|TSSclassifier=W|UniProt=|association_with_transcript=-232bp_to_ENST00000468247_5end|description=CAGE_peak_15_at_RERE_5end|id=chr1:8763510..8763538,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!1.41e-10!22;UBERON:0001950!1.92e-10!20;UBERON:0000956!9.12e-10!25;UBERON:0000203!9.12e-10!25;UBERON:0001869!1.44e-09!32;UBERON:0001893!1.68e-09!34;UBERON:0002791!4.50e-09!33;UBERON:0000924!1.54e-08!173;UBERON:0006601!1.54e-08!173;UBERON:0002020!1.82e-08!34;UBERON:0003528!1.82e-08!34;UBERON:0002780!3.55e-08!41;UBERON:0001890!3.55e-08!41;UBERON:0006240!3.55e-08!41;UBERON:0001017!4.01e-08!82;UBERON:0003080!1.52e-07!42;UBERON:0007023!1.61e-07!115;UBERON:0004121!1.98e-07!169;UBERON:0005743!3.29e-07!86;UBERON:0002346!4.15e-07!90;UBERON:0000073!8.56e-07!94;UBERON:0001016!8.56e-07!94|ontology_enrichment_uberon_v019=UBERON:0001950;1.15e-13;20!UBERON:0002619;3.70e-13;22!UBERON:0000956;5.84e-12;25!UBERON:0000203;5.84e-12;25!UBERON:0001869;7.59e-09;32!UBERON:0001893;1.80e-08;34!UBERON:0002791;4.01e-08;32!UBERON:0000922;1.29e-07;49!UBERON:0003528;3.50e-07;34!UBERON:0002020;3.50e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.16e-14,20;UBERON:0002619,9.54e-14,22;UBERON:0000956,2.04e-12,25;UBERON:0000203,2.04e-12,25;UBERON:0001869,2.81e-10,32;UBERON:0001893,3.73e-10,34;UBERON:0002791,3.78e-09,32;UBERON:0003528,3.25e-08,34;UBERON:0002020,3.25e-08,34;UBERON:0001017,1.11e-07,81;UBERON:0002780,3.52e-07,41;UBERON:0001890,3.52e-07,41;UBERON:0003080,3.52e-07,41;UBERON:0006240,3.52e-07,41;UBERON:0004121,5.26e-07,171;UBERON:0000924,5.26e-07,171;UBERON:0006601,5.26e-07,171|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,1.47440361900905,1.39560233594486,0.436882744260345,0,0.618831764800233,0.662794751455832,0.672325146451775,0,0,0,1.10808952269109,0.612002073732759,1.56727360739044,0.286235987131057,0.547497700291537,1.25542639594803,1.29902789771517,0.57470412614962,0.944529375764151,0.393364276848904,0.383829398097213,0,0,1.204823675113,0.739508020333575,0.0774672005803016,0.426507697462265,1.17440175733939,0,0.601633342410425,0.217010870715852,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0,0,0.320929027076094,0,0.329851300186716,0.398927315243264,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0,0,0.633765858935825,0.850417199860174,0.628975936525128,0.336985893439485,0.300353785683013,0.964353520182481,0.570025487482497,0.79566670879636,1.0959849225878,0,2.18455444504853,1.77901850772711,1.28019066769952,2.40237592221607,2.87376219977242,0.661044872784862,5.72432252721218,2.27685187643779,2.34894875748376,1.52909291250092,0,1.12101712596307,1.31692042387539,0,0,0.205601498999509,0.167186495390678,0,0,0,1.00269411196656,0.294605907474837,0.221533894583621,0.270803863765016,0.512365278902701,0.910415432919148,0.328875809207352,0.552700035571697,0.579606171470105,0,0.267540828089713,0,0.339928028092699,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0,0.144846518960824,0,0,0.0945348171640679,0.665188192387692,0.43917392846563,1.37528029272598,2.18577172975525,0,0,0.522389211897802,0.531831842075461,1.19245312152671,1.14398982156026,1.11437250398869,1.39133685156694,0,0,1.69592382577203,0.419499436209906,0.550236083880135,0.626984899610432,0.516833518338658,1.42306505074684,1.67360306382335,0,0,0.488124115096339,0,0,0.625098097988558,1.34717623575702,1.91439516821648,1.53316637465883,1.89853131913626,0.916008719652036,0,0,1.3082821564276,0.993943903390637,0.379891534993739,1.19168262731897,2.29469296599051,0.709336764396714,0,0,0.74000264525148,0.933633106199299,0.404132016209064,0.490385709340376,0.605429710579726,0,1.87457145467037,0,0.570471821544449,0.149448680551801,2.11382097558777,0.485618833104395,1.68540968042698,0.61246251376468,0.61417158655884,0.619954687054593,1.18800285728205,1.7308685049499,0.910161361938026,0,0.673344455816265,2.00189631795143,0.554128230968366,2.19488810440419,0,2.85452311922534,0.567160915800105,0.358779271377724,0.640672166455702,0.847727604638247,0.600182192168805,0.721367704669072,0.257640540045629,0.37223371266318,0.675105328965065,0.389748020644795,0.757301322732344,0.368199594569197,1.13152239773168,0,0.10075209822764,0,0.193260853163297,0,1.43402297694502,1.21973706129595,1.98794652482228,0.929551542956147,1.14027160516907,0.252320850875628,3.28479623168247,0,0.643240938192885,1.38134921352481,0,0,0.709840800239063,0.674338760312407,0.723033089650446,0.55146986366197,0.653638332277218,1.42362371466658,0.134831308160164,0,0.769494313892781,0,0,2.4694440679884,4.41026134156626,0,0,0,0,1.1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=473 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9965 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-232bp_to_ENST00000468247_5end | |||
|description=CAGE_peak_15_at_RERE_5end | |||
|id=chr1:8763510..8763538,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001950;1.15e-13;20!UBERON:0002619;3.70e-13;22!UBERON:0000956;5.84e-12;25!UBERON:0000203;5.84e-12;25!UBERON:0001869;7.59e-09;32!UBERON:0001893;1.80e-08;34!UBERON:0002791;4.01e-08;32!UBERON:0000922;1.29e-07;49!UBERON:0003528;3.50e-07;34!UBERON:0002020;3.50e-07;34 | |||
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| |||
|short_description=p15@RERE | |||
}} |
Revision as of 07:02, 12 September 2013
Short description: | p15@RERE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_RERE_5end |
Coexpression cluster: | NA |
Association with transcript: | -232bp_to_ENST00000468247_5end |
EntrezGene: | RERE |
HGNC: | 9965 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 2.16e-14 | 20 |
regional part of cerebral cortex | 9.54e-14 | 22 |
cerebral cortex | 2.04e-12 | 25 |
pallium | 2.04e-12 | 25 |
cerebral hemisphere | 2.81e-10 | 32 |
telencephalon | 3.73e-10 | 34 |
regional part of telencephalon | 3.78e-09 | 32 |
brain grey matter | 3.25e-08 | 34 |
gray matter | 3.25e-08 | 34 |
central nervous system | 1.11e-07 | 81 |
regional part of forebrain | 3.52e-07 | 41 |
forebrain | 3.52e-07 | 41 |
anterior neural tube | 3.52e-07 | 41 |
future forebrain | 3.52e-07 | 41 |
ectoderm-derived structure | 5.26e-07 | 171 |
ectoderm | 5.26e-07 | 171 |
presumptive ectoderm | 5.26e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.