FFCP PHASE1:Hg19::chr1:60280668..60280699,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51361|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19884|TSSclassifier=S|UniProt=Q9UJC3|association_with_transcript=135bp_to_ENST00000371208,NM_015888,uc001czo.2_5end|description=CAGE_peak_2_at_HOOK1_5end|id=chr1:60280668..60280699,+|ontology_enrichment_celltype=CL:0000066!1.40e-08!254;CL:0000223!2.46e-07!59|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0001041;3.60e-09;30!UBERON:0009117;4.17e-08;10!UBERON:0005564;4.17e-08;10|ontology_enrichment_disease=DOID:305!3.09e-28!106;DOID:0050687!9.27e-22!143;DOID:299!1.06e-08!25;DOID:162!1.07e-08!235;DOID:14566!6.91e-08!239|ontology_enrichment_disease_v019=DOID:305;1.04e-08;106!DOID:299;4.12e-08;25!DOID:3119;3.03e-07;14|ontology_enrichment_disease_v019_2=DOID:305,1.58e-23,106;DOID:0050687,1.83e-20,143;DOID:162,1.23e-08,235;DOID:299,2.81e-08,25;DOID:14566,4.89e-08,239;DOID:3119,3.43e-07,14|ontology_enrichment_uberon=UBERON:0007023!1.41e-15!115;UBERON:0001049!6.44e-13!57;UBERON:0005068!6.44e-13!57;UBERON:0006241!6.44e-13!57;UBERON:0007135!6.44e-13!57;UBERON:0002780!4.06e-12!41;UBERON:0001890!4.06e-12!41;UBERON:0006240!4.06e-12!41;UBERON:0003080!1.59e-11!42;UBERON:0005743!8.16e-11!86;UBERON:0002616!2.41e-10!59;UBERON:0001017!3.97e-10!82;UBERON:0000073!8.74e-10!94;UBERON:0001016!8.74e-10!94;UBERON:0004921!2.15e-09!129;UBERON:0004185!2.15e-09!129;UBERON:0002346!2.17e-09!90;UBERON:0001007!2.88e-09!155;UBERON:0001555!2.88e-09!155;UBERON:0007026!2.88e-09!155;UBERON:0001869!3.29e-09!32;UBERON:0000955!3.37e-09!69;UBERON:0006238!3.37e-09!69;UBERON:0002619!5.12e-09!22;UBERON:0004119!9.57e-09!169;UBERON:0000925!9.57e-09!169;UBERON:0006595!9.57e-09!169;UBERON:0001893!1.10e-08!34;UBERON:0003075!1.84e-08!86;UBERON:0007284!1.84e-08!86;UBERON:0002020!1.99e-08!34;UBERON:0003528!1.99e-08!34;UBERON:0000077!2.15e-08!130;UBERON:0002791!2.63e-08!33;UBERON:0001950!3.25e-08!20;UBERON:0003056!3.29e-08!61;UBERON:0001041!9.00e-08!98;UBERON:0005911!9.07e-08!82;UBERON:0000466!3.54e-07!126;UBERON:0000956!4.19e-07!25;UBERON:0000203!4.19e-07!25;UBERON:0000153!4.78e-07!129;UBERON:0007811!4.78e-07!129|ontology_enrichment_uberon_v019=UBERON:0002619;2.08e-09;22!UBERON:0002780;2.96e-09;41!UBERON:0001890;2.96e-09;41!UBERON:0001869;2.35e-08;32!UBERON:0001950;2.94e-08;20!UBERON:0002791;7.31e-08;32!UBERON:0000956;9.51e-08;25!UBERON:0000203;9.51e-08;25!UBERON:0000073;1.46e-07;53!UBERON:0002616;1.46e-07;53!UBERON:0001893;4.57e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0002780,2.66e-12,41;UBERON:0001890,2.66e-12,41;UBERON:0003080,2.66e-12,41;UBERON:0006240,2.66e-12,41;UBERON:0000073,4.02e-12,53;UBERON:0002616,4.02e-12,53;UBERON:0011216,1.63e-11,223;UBERON:0001049,5.92e-11,56;UBERON:0005068,5.92e-11,56;UBERON:0006241,5.92e-11,56;UBERON:0007135,5.92e-11,56;UBERON:0000955,5.31e-10,68;UBERON:0006238,5.31e-10,68;UBERON:0002619,1.12e-09,22;UBERON:0001869,2.01e-09,32;UBERON:0003056,5.30e-09,61;UBERON:0001017,9.13e-09,81;UBERON:0001950,1.36e-08,20;UBERON:0002346,1.55e-08,86;UBERON:0001893,1.60e-08,34;UBERON:0002791,1.83e-08,32;UBERON:0001016,3.84e-08,89;UBERON:0000956,5.64e-08,25;UBERON:0000203,5.64e-08,25;UBERON:0003528,1.22e-07,34;UBERON:0002020,1.22e-07,34;UBERON:0003075,2.56e-07,82;UBERON:0007284,2.56e-07,82;UBERON:0007023,3.47e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29902789771517,0.821005894499457,0.629686250509434,0.393364276848904,0.383829398097213,0.309632246632152,0.919421224478927,0,0,0,0,0.293600439334847,0,0,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.09227722252426,0,3.84057200309856,2.00197993518006,1.14950487990897,2.64417949113945,0,1.70763890732835,4.69789751496751,1.52909291250092,1.32171328579026,0,0,3.93419540227666,0.393010762749165,2.87842098599313,0,3.2592226663359,2.36723902867367,5.84480185223734,0,0.294605907474837,0,0.270803863765016,0.25618263945135,0,0.328875809207352,0.276350017785848,0.289803085735052,3.11401782640327,4.28065324943541,3.1360657141493,0,1.53288197440768,1.03088233644789,1.01207876807801,1.59282707162048,1.30216690771284,0,1.95747654801105,2.04778577847069,0,0.710331756132051,0,1.41124720257313,0.267440195783507,2.31719046212478,0,0,0,0,0,0,0,0,0.283604451492204,0,0.351339142772504,2.68507104770311,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.860413786167011,1.70763188581434,1.59035721985782,1.39432731443422,1.7622379352613,1.26160425437814,0.36497735907583,0,0,0,0,0,0.236613600079688,0.674338760312407,0.241011029883482,0.220587945464788,0.435758888184812,0.237270619111097,0,0.196221465125346,0.38474715694639,0,0,0,0,3.80265104465493,0,1.77236972004421,0,1.8448265781467,0,0.548751427043128,0,0.30158691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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51361 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19884 | |||
|TSSclassifier=S | |||
|UniProt=Q9UJC3 | |||
|association_with_transcript=135bp_to_ENST00000371208,NM_015888,uc001czo.2_5end | |||
|description=CAGE_peak_2_at_HOOK1_5end | |||
|id=chr1:60280668..60280699,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.40e-08!254;CL:0000223!2.46e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001041;3.60e-09;30!UBERON:0009117;4.17e-08;10!UBERON:0005564;4.17e-08;10 | |||
|ontology_enrichment_disease=DOID:305!3.09e-28!106;DOID:0050687!9.27e-22!143;DOID:299!1.06e-08!25;DOID:162!1.07e-08!235;DOID:14566!6.91e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:305;1.04e-08;106!DOID:299;4.12e-08;25!DOID:3119;3.03e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.58e-23,106;DOID:0050687,1.83e-20,143;DOID:162,1.23e-08,235;DOID:299,2.81e-08,25;DOID:14566,4.89e-08,239;DOID:3119,3.43e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.41e-15!115;UBERON:0001049!6.44e-13!57;UBERON:0005068!6.44e-13!57;UBERON:0006241!6.44e-13!57;UBERON:0007135!6.44e-13!57;UBERON:0002780!4.06e-12!41;UBERON:0001890!4.06e-12!41;UBERON:0006240!4.06e-12!41;UBERON:0003080!1.59e-11!42;UBERON:0005743!8.16e-11!86;UBERON:0002616!2.41e-10!59;UBERON:0001017!3.97e-10!82;UBERON:0000073!8.74e-10!94;UBERON:0001016!8.74e-10!94;UBERON:0004921!2.15e-09!129;UBERON:0004185!2.15e-09!129;UBERON:0002346!2.17e-09!90;UBERON:0001007!2.88e-09!155;UBERON:0001555!2.88e-09!155;UBERON:0007026!2.88e-09!155;UBERON:0001869!3.29e-09!32;UBERON:0000955!3.37e-09!69;UBERON:0006238!3.37e-09!69;UBERON:0002619!5.12e-09!22;UBERON:0004119!9.57e-09!169;UBERON:0000925!9.57e-09!169;UBERON:0006595!9.57e-09!169;UBERON:0001893!1.10e-08!34;UBERON:0003075!1.84e-08!86;UBERON:0007284!1.84e-08!86;UBERON:0002020!1.99e-08!34;UBERON:0003528!1.99e-08!34;UBERON:0000077!2.15e-08!130;UBERON:0002791!2.63e-08!33;UBERON:0001950!3.25e-08!20;UBERON:0003056!3.29e-08!61;UBERON:0001041!9.00e-08!98;UBERON:0005911!9.07e-08!82;UBERON:0000466!3.54e-07!126;UBERON:0000956!4.19e-07!25;UBERON:0000203!4.19e-07!25;UBERON:0000153!4.78e-07!129;UBERON:0007811!4.78e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.08e-09;22!UBERON:0002780;2.96e-09;41!UBERON:0001890;2.96e-09;41!UBERON:0001869;2.35e-08;32!UBERON:0001950;2.94e-08;20!UBERON:0002791;7.31e-08;32!UBERON:0000956;9.51e-08;25!UBERON:0000203;9.51e-08;25!UBERON:0000073;1.46e-07;53!UBERON:0002616;1.46e-07;53!UBERON:0001893;4.57e-07;34 | |||
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| |||
|short_description=p2@HOOK1 | |||
}} |
Revision as of 06:17, 12 September 2013
Short description: | p2@HOOK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HOOK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 135bp_to_ENST00000371208, NM_015888, uc001czo.2_5end |
EntrezGene: | HOOK1 |
HGNC: | 19884 |
UniProt: | Q9UJC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 2.66e-12 | 41 |
forebrain | 2.66e-12 | 41 |
anterior neural tube | 2.66e-12 | 41 |
future forebrain | 2.66e-12 | 41 |
regional part of nervous system | 4.02e-12 | 53 |
regional part of brain | 4.02e-12 | 53 |
organ system subdivision | 1.63e-11 | 223 |
neural tube | 5.92e-11 | 56 |
neural rod | 5.92e-11 | 56 |
future spinal cord | 5.92e-11 | 56 |
neural keel | 5.92e-11 | 56 |
brain | 5.31e-10 | 68 |
future brain | 5.31e-10 | 68 |
regional part of cerebral cortex | 1.12e-09 | 22 |
cerebral hemisphere | 2.01e-09 | 32 |
pre-chordal neural plate | 5.30e-09 | 61 |
central nervous system | 9.13e-09 | 81 |
neocortex | 1.36e-08 | 20 |
neurectoderm | 1.55e-08 | 86 |
telencephalon | 1.60e-08 | 34 |
regional part of telencephalon | 1.83e-08 | 32 |
nervous system | 3.84e-08 | 89 |
cerebral cortex | 5.64e-08 | 25 |
pallium | 5.64e-08 | 25 |
brain grey matter | 1.22e-07 | 34 |
gray matter | 1.22e-07 | 34 |
neural plate | 2.56e-07 | 82 |
presumptive neural plate | 2.56e-07 | 82 |
adult organism | 3.47e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.58e-23 | 106 |
cell type cancer | 1.83e-20 | 143 |
cancer | 1.23e-08 | 235 |
adenocarcinoma | 2.81e-08 | 25 |
disease of cellular proliferation | 4.89e-08 | 239 |
gastrointestinal system cancer | 3.43e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.