FFCP PHASE1:Hg19::chr1:246580705..246580737,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64754|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15513|TSSclassifier=S|UniProt=Q9H7B4|association_with_transcript=0bp_to_ENST00000541742,NM_022743,uc001ibk.2_5end|coexpression_cluster_id=C2577|description=CAGE_peak_2_at_SMYD3_5end|id=chr1:246580705..246580737,-|ontology_enrichment_celltype=CL:0000055!2.64e-23!180;CL:0000057!4.47e-20!75;CL:0002620!1.84e-10!23;CL:0002334!1.25e-09!12|ontology_enrichment_celltype_v019=CL:0002334;3.47e-14;12!CL:0002620;3.88e-10;23!CL:0000048;9.81e-09;58!CL:0000723;1.87e-08;61!CL:0002570;2.80e-08;8!CL:0000134;1.71e-07;55!CL:0000034;2.35e-07;69!CL:0000569;8.17e-07;4|ontology_enrichment_celltype_v019_2=CL:0000057,2.62e-17,76;CL:0002334,2.26e-14,12;CL:0000048,9.12e-12,427;CL:0000034,1.77e-11,441;CL:0000723,3.25e-11,433;CL:0002620,4.10e-10,23;CL:0000219,5.08e-09,386;CL:0002570,2.64e-08,8;CL:0000134,8.14e-08,354;CL:0002320,2.85e-07,361;CL:0000569,7.84e-07,4;CL:0000011,7.84e-07,4|ontology_enrichment_development_v019=CL:0000011;8.17e-07;4|ontology_enrichment_disease=DOID:2394!7.27e-11!14|ontology_enrichment_disease_v019=DOID:2394;1.06e-16;14!DOID:193;2.52e-09;29!DOID:120;4.76e-09;27|ontology_enrichment_disease_v019_2=DOID:2394,9.72e-17,14;DOID:193,2.17e-09,29;DOID:120,4.21e-09,27|ontology_enrichment_uberon=UBERON:0002097!5.07e-07!40;UBERON:0002199!7.20e-07!45;UBERON:0002416!7.20e-07!45|ontology_enrichment_uberon_v019=UBERON:0002118;3.70e-08;5!UBERON:0000992;4.34e-08;13|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.86e-08,371;UBERON:0002118,3.66e-08,5;UBERON:0000992,4.07e-08,13;UBERON:0002199,3.02e-07,46;UBERON:0002416,3.02e-07,46;UBERON:0002097,7.53e-07,41|phase1_expression=0.908391896352783,1.71280419112787,8.03440103347036,0,0.446961094427288,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0,0,0,1.20538905604795,0.730310090387373,0.487932798790507,0.369363174230364,0,0,2.0036519099174,1.50561867580173,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5905718941022,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.8849341644221,5.57174251324151,429.932610100521,4.30254931123221,3.19201543978521,1.12135520028461,0,0.98667019366864,0.622422070799533,0.134710672069688,0,0,0,0,1.24864030732128,1.71141546463335,0.149448680551801,3.05329696473789,8.41739310714284,4.6348766211742,0.204154171254893,0.245668634623536,0,1.18800285728205,0.494533858557114,0.910161361938026,2.15585442544872,0.168336113954066,0,0.831192346452549,20.1929705605185,18.6957555437402,0.751190294532984,0.113432183160021,3.40840307808838,1.2813443329114,4.87443372666992,2.70081986475962,0.92747276314595,1.28820270022815,0.930584281657949,6.91982962189192,1.36411807225678,4.29137416214995,3.40584624976508,0,3.55009592516614,6.85114267947954,0.339121184620975,0.57978255948989,1.36373060295417,0.286804595389004,0.243947412259191,0.132529768321485,2.32387885739037,5.59769697083,0.756962552626885,0.72995471815166,0,0,1.38134921352481,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0.858486162094873,0,0,0,4.68669169933885,1.34385702559088,0,0,0,0,2.46331618947972,0.176096868026452,76.9187308656264,13.4031556677774,83.8249757951163,0,0,0,0,0,0,0,0,0,0,2.97324946242889,0,1.690605505112,0.797814349754612,0,0,0,0,0,0,0,2.28015329005615,0,0.791951872933429,158.255672956283,229.213299611877,53.7854692559467,0,0,0,0,0,0,2.46128221334885,0,3.9393411912777,0.112085143993527,0,0,0,5.84417635711666,3.90419561572865,1.54657762555539,2.34522771468088,3.18969375826582,0,0,0,0.24538298343828,0,0.271265023699736,0.207970861530807,5.53129865271201,0,1.63997980989798,2.40756879782175,0,0,0,1.84369168541703,1.21637060255316,0,0,0,0,0,0,0,0,20.3448402411397,2.91577749247319,3.64858122762996,107.8931636733,3.07024349440022,21.0718636698126,4.45254199334973,1.54209693802656,20.5971601363227,9.8552587216571,1.55776328755086,1.74315567689939,0,0.200506470303285,0,2.87036120411517,0.182091168006717,0.262248829918848,0,0.616122696835318,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,9.64103579064957,1.06337790121334,0.770243085573222,0.15350367472613,11.440435516216,1.18162269355101,0.145016693914229,0.681813019328807,0.356128142586949,0,0,0,0,46.9494004790259,80.9067731354745,4.1822236209636,0,0,2.60979897622522,0,0,0,0,6.86268698125769,0,1.28381696410176,1.27281299170375,0,5.03642881233281,0.823611089208164,2.5918728516051,2.02182481573316,0,0.421258456238981,0,0,0,0,0.848432591722276,0,0,0,0,2.89387767133344,0,0.811641507850816,0.30982349809975,0.845086807596724,0.573645408816206,0.0982490410131212,0.35667105148125,4.61189383291777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64754 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15513 | |||
|TSSclassifier=S | |||
|UniProt=Q9H7B4 | |||
|association_with_transcript=0bp_to_ENST00000541742,NM_022743,uc001ibk.2_5end | |||
|coexpression_cluster_id=C2577 | |||
|description=CAGE_peak_2_at_SMYD3_5end | |||
|id=chr1:246580705..246580737,- | |||
|ontology_enrichment_celltype=CL:0000055!2.64e-23!180;CL:0000057!4.47e-20!75;CL:0002620!1.84e-10!23;CL:0002334!1.25e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.47e-14;12!CL:0002620;3.88e-10;23!CL:0000048;9.81e-09;58!CL:0000723;1.87e-08;61!CL:0002570;2.80e-08;8!CL:0000134;1.71e-07;55!CL:0000034;2.35e-07;69!CL:0000569;8.17e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.62e-17,76;CL:0002334,2.26e-14,12;CL:0000048,9.12e-12,427;CL:0000034,1.77e-11,441;CL:0000723,3.25e-11,433;CL:0002620,4.10e-10,23;CL:0000219,5.08e-09,386;CL:0002570,2.64e-08,8;CL:0000134,8.14e-08,354;CL:0002320,2.85e-07,361;CL:0000569,7.84e-07,4;CL:0000011,7.84e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000011;8.17e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!7.27e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.06e-16;14!DOID:193;2.52e-09;29!DOID:120;4.76e-09;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.72e-17,14;DOID:193,2.17e-09,29;DOID:120,4.21e-09,27 | |||
|ontology_enrichment_uberon=UBERON:0002097!5.07e-07!40;UBERON:0002199!7.20e-07!45;UBERON:0002416!7.20e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;3.70e-08;5!UBERON:0000992;4.34e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.86e-08,371;UBERON:0002118,3.66e-08,5;UBERON:0000992,4.07e-08,13;UBERON:0002199,3.02e-07,46;UBERON:0002416,3.02e-07,46;UBERON:0002097,7.53e-07,41 | |||
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| |||
|short_description=p2@SMYD3 | |||
}} |
Revision as of 04:44, 12 September 2013
Short description: | p2@SMYD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SMYD3_5end |
Coexpression cluster: | C2577_mesenchymal_Fibroblast_Mesothelial_anaplastic_glioma_Preadipocyte_liposarcoma |
Association with transcript: | 0bp_to_ENST00000541742, NM_022743, uc001ibk.2_5end |
EntrezGene: | SMYD3 |
HGNC: | 15513 |
UniProt: | Q9H7B4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.62e-17 | 76 |
preadipocyte | 2.26e-14 | 12 |
multi fate stem cell | 9.12e-12 | 427 |
stem cell | 1.77e-11 | 441 |
somatic stem cell | 3.25e-11 | 433 |
skin fibroblast | 4.10e-10 | 23 |
motile cell | 5.08e-09 | 386 |
mesenchymal stem cell of adipose | 2.64e-08 | 8 |
mesenchymal cell | 8.14e-08 | 354 |
connective tissue cell | 2.85e-07 | 361 |
cardiac mesenchymal cell | 7.84e-07 | 4 |
migratory trunk neural crest cell | 7.84e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.86e-08 | 371 |
right ovary | 3.66e-08 | 5 |
female gonad | 4.07e-08 | 13 |
integument | 3.02e-07 | 46 |
integumental system | 3.02e-07 | 46 |
skin of body | 7.53e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.72e-17 | 14 |
reproductive organ cancer | 2.17e-09 | 29 |
female reproductive organ cancer | 4.21e-09 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.