FFCP PHASE1:Hg19::chr1:173174580..173174592,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7292|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11934|TSSclassifier=S|UniProt=Q8IV74|association_with_transcript=19bp_to_ENST00000545292_5end|description=CAGE_peak_8_at_TNFSF4_5end|id=chr1:173174580..173174592,-|ontology_enrichment_celltype=CL:0000055!1.73e-09!180;CL:0000034!7.36e-09!444;CL:0000144!7.80e-09!625;CL:0000048!9.48e-09!430;CL:0000723!2.27e-08!436;CL:0002371!1.68e-07!591;CL:0002573!2.26e-07!2|ontology_enrichment_celltype_v019=CL:0002573;1.81e-12;2!CL:0002568;3.91e-10;1!CL:0000037;6.58e-10;1!CL:0001024;6.58e-10;1!CL:0000511;1.55e-09;1!CL:0002625;1.55e-09;1!CL:0002557;1.55e-09;1!CL:0000216;1.55e-09;1!CL:0002599;1.55e-09;1!CL:0000134;1.35e-08;55!CL:0000048;2.55e-08;58!CL:0000034;3.45e-08;69!CL:0000243;4.19e-08;15!CL:0000125;4.19e-08;15!CL:0002537;1.27e-07;5!CL:0000095;2.90e-07;17|ontology_enrichment_celltype_v019_2=CL:0002573,1.62e-12,2;CL:0002568,3.74e-10,1;CL:0001024,7.50e-10,1;CL:0002557,9.70e-10,1;CL:0000511,1.15e-09,1;CL:0002625,1.15e-09,1;CL:0000216,1.15e-09,1;CL:0002599,1.62e-09,1;CL:0000243,3.54e-08,15;CL:0000125,3.54e-08,15;CL:0000030,3.54e-08,15;CL:0000339,3.54e-08,15;CL:0002537,1.36e-07,5;CL:0000095,2.50e-07,17;CL:0000123,2.50e-07,17|ontology_enrichment_development_v019=CL:0000339;4.19e-08;15|ontology_enrichment_disease=DOID:2394!1.06e-10!14|ontology_enrichment_disease_v019=DOID:2394;5.97e-15;14!DOID:3571;4.65e-10;1!DOID:120;1.14e-07;27!DOID:193;3.97e-07;29|ontology_enrichment_disease_v019_2=DOID:2394,5.72e-15,14;DOID:3571,4.46e-10,1;DOID:120,1.11e-07,27;DOID:193,3.89e-07,29|ontology_enrichment_uberon=UBERON:0000490!1.23e-08!138;UBERON:0002118!4.81e-07!5;UBERON:0004532!4.81e-07!5|ontology_enrichment_uberon_v019=UBERON:0001136;1.55e-09;1!UBERON:0001343;1.55e-09;1!UBERON:0004910;1.55e-09;1!UBERON:0004813;1.55e-09;1!UBERON:0002118;7.45e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0004871,6.13e-10,8;UBERON:0001136,1.15e-09,1;UBERON:0001343,1.15e-09,1;UBERON:0004910,1.15e-09,1;UBERON:0005154,1.15e-09,1;UBERON:0005295,1.15e-09,1;UBERON:0004813,1.15e-09,1;UBERON:0005297,1.15e-09,1;UBERON:0005294,1.15e-09,1;UBERON:0010141,1.15e-09,1;UBERON:0005891,1.15e-09,1;UBERON:0002118,8.25e-08,5|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0.795285947051099,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.732806975721629,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,1.06748995729705,0,0,0.942974704487816,0.326923806226917,0,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,1.81491493056034,0.358779271377724,2.13557388818567,0,0,0.412210116953756,0.257640540045629,0.930584281657949,0,0,0,0.184099797284599,0,0.355009592516614,0.806016785821122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65378176728,0,0,1.32969058292435,2.08014873822732,0,0,0,0.714889968290738,0,0,0.325736184293735,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0.355123450626254,0,0,0,0,0,0,0.34444334449382,0.364182336013434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.429374660225974,0,0,1.71567174531442,0,0,0,0,0.719489830333259,0,0.706874414074119,0.202182481573316,0,0,1.46290121726877,0.243713489631284,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0,1.29070216983646,0.294747123039363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59873811429845,0,0.423347165447766,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.296521128680622,0.617819694732514,0.417687798021821,0,0,0,0.182454789215666,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9026588850306,1.46443984837266,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,3.60299883542404,0,0.787831823072237,0.741742725430498,0.606631894687664,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0.318593534327405,0,0.776314784381297,0,2.12673371646396,1.5652351854352,0,1.52322084867518,2.03435366602331,0.545545977607678,0.429642228169954,0,4.37905477568478,1.20008329398946,0,0,0,0,0,0,0,0.231522474323834,0,0.358177682162975,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4316280211864,2.55640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p8@TNFSF4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11934 | |||
|TSSclassifier=S | |||
|UniProt=Q8IV74 | |||
|association_with_transcript=19bp_to_ENST00000545292_5end | |||
|description=CAGE_peak_8_at_TNFSF4_5end | |||
|id=chr1:173174580..173174592,- | |||
|ontology_enrichment_celltype=CL:0000055!1.73e-09!180;CL:0000034!7.36e-09!444;CL:0000144!7.80e-09!625;CL:0000048!9.48e-09!430;CL:0000723!2.27e-08!436;CL:0002371!1.68e-07!591;CL:0002573!2.26e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002573;1.81e-12;2!CL:0002568;3.91e-10;1!CL:0000037;6.58e-10;1!CL:0001024;6.58e-10;1!CL:0000511;1.55e-09;1!CL:0002625;1.55e-09;1!CL:0002557;1.55e-09;1!CL:0000216;1.55e-09;1!CL:0002599;1.55e-09;1!CL:0000134;1.35e-08;55!CL:0000048;2.55e-08;58!CL:0000034;3.45e-08;69!CL:0000243;4.19e-08;15!CL:0000125;4.19e-08;15!CL:0002537;1.27e-07;5!CL:0000095;2.90e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,1.62e-12,2;CL:0002568,3.74e-10,1;CL:0001024,7.50e-10,1;CL:0002557,9.70e-10,1;CL:0000511,1.15e-09,1;CL:0002625,1.15e-09,1;CL:0000216,1.15e-09,1;CL:0002599,1.62e-09,1;CL:0000243,3.54e-08,15;CL:0000125,3.54e-08,15;CL:0000030,3.54e-08,15;CL:0000339,3.54e-08,15;CL:0002537,1.36e-07,5;CL:0000095,2.50e-07,17;CL:0000123,2.50e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000339;4.19e-08;15 | |||
|ontology_enrichment_disease=DOID:2394!1.06e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.97e-15;14!DOID:3571;4.65e-10;1!DOID:120;1.14e-07;27!DOID:193;3.97e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.72e-15,14;DOID:3571,4.46e-10,1;DOID:120,1.11e-07,27;DOID:193,3.89e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000490!1.23e-08!138;UBERON:0002118!4.81e-07!5;UBERON:0004532!4.81e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;1.55e-09;1!UBERON:0001343;1.55e-09;1!UBERON:0004910;1.55e-09;1!UBERON:0004813;1.55e-09;1!UBERON:0002118;7.45e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004871,6.13e-10,8;UBERON:0001136,1.15e-09,1;UBERON:0001343,1.15e-09,1;UBERON:0004910,1.15e-09,1;UBERON:0005154,1.15e-09,1;UBERON:0005295,1.15e-09,1;UBERON:0004813,1.15e-09,1;UBERON:0005297,1.15e-09,1;UBERON:0005294,1.15e-09,1;UBERON:0010141,1.15e-09,1;UBERON:0005891,1.15e-09,1;UBERON:0002118,8.25e-08,5 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0.795285947051099,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.732806975721629,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,1.06748995729705,0,0,0.942974704487816,0.326923806226917,0,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,1.81491493056034,0.358779271377724,2.13557388818567,0,0,0.412210116953756,0.257640540045629,0.930584281657949,0,0,0,0.184099797284599,0,0.355009592516614,0.806016785821122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65378176728,0,0,1.32969058292435,2.08014873822732,0,0,0,0.714889968290738,0,0,0.325736184293735,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0.355123450626254,0,0,0,0,0,0,0.34444334449382,0.364182336013434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.429374660225974,0,0,1.71567174531442,0,0,0,0,0.719489830333259,0,0.706874414074119,0.202182481573316,0,0,1.46290121726877,0.243713489631284,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0,1.29070216983646,0.294747123039363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59873811429845,0,0.423347165447766,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.296521128680622,0.617819694732514,0.417687798021821,0,0,0,0.182454789215666,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9026588850306,1.46443984837266,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,3.60299883542404,0,0.787831823072237,0.741742725430498,0.606631894687664,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0.318593534327405,0,0.776314784381297,0,2.12673371646396,1.5652351854352,0,1.52322084867518,2.03435366602331,0.545545977607678,0.429642228169954,0,4.37905477568478,1.20008329398946,0,0,0,0,0,0,0,0.231522474323834,0,0.358177682162975,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4316280211864,2.55640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@TNFSF4 | |||
}} |
Revision as of 01:51, 12 September 2013
Short description: | p8@TNFSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_TNFSF4_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000545292_5end |
EntrezGene: | TNFSF4 |
HGNC: | 11934 |
UniProt: | Q8IV74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 1.62e-12 | 2 |
mesenchymal stem cell of Wharton's jelly | 3.74e-10 | 1 |
CD34-positive, CD38-negative hematopoietic stem cell | 7.50e-10 | 1 |
fibroblast of pulmonary artery | 9.70e-10 | 1 |
androgen binding protein secreting cell | 1.15e-09 | 1 |
seminiferous tubule epithelial cell | 1.15e-09 | 1 |
Sertoli cell | 1.15e-09 | 1 |
smooth muscle cell of the esophagus | 1.62e-09 | 1 |
glial cell (sensu Vertebrata) | 3.54e-08 | 15 |
glial cell | 3.54e-08 | 15 |
glioblast | 3.54e-08 | 15 |
glioblast (sensu Vertebrata) | 3.54e-08 | 15 |
amnion mesenchymal stem cell | 1.36e-07 | 5 |
neuron associated cell | 2.50e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.50e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
somatic layer of lateral plate mesoderm | 6.13e-10 | 8 |
mesothelium | 1.15e-09 | 1 |
seminiferous tubule of testis | 1.15e-09 | 1 |
epithelium of male gonad | 1.15e-09 | 1 |
epithelial cord | 1.15e-09 | 1 |
sex cord | 1.15e-09 | 1 |
seminiferous tubule epithelium | 1.15e-09 | 1 |
testis sex cord | 1.15e-09 | 1 |
genital ridge | 1.15e-09 | 1 |
primitive sex cord of indifferent gonad | 1.15e-09 | 1 |
coelomic epithelium | 1.15e-09 | 1 |
right ovary | 8.25e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.72e-15 | 14 |
liver cancer | 4.46e-10 | 1 |
female reproductive organ cancer | 1.11e-07 | 27 |
reproductive organ cancer | 3.89e-07 | 29 |
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