FFCP PHASE1:Hg19::chr1:170632647..170632659,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5396|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9142|TSSclassifier=W|UniProt=P54821|association_with_transcript=372bp_to_ENST00000367760_5end|coexpression_cluster_id=C929|description=CAGE_peak_17_at_PRRX1_5end|id=chr1:170632647..170632659,+|ontology_enrichment_celltype=CL:0000055!5.63e-32!180;CL:0000057!2.64e-27!75;CL:0002620!2.57e-12!23;CL:0000048!5.67e-10!430;CL:0002334!2.67e-09!12;CL:0000723!3.00e-09!436;CL:0000680!3.74e-09!57;CL:0000056!3.74e-09!57;CL:0000355!3.74e-09!57;CL:0000034!1.32e-08!444;CL:0000187!4.48e-08!54;CL:0000183!4.36e-07!59;CL:0002539!7.76e-07!10|ontology_enrichment_celltype_v019=CL:0000057;5.15e-11;73!CL:0002570;5.70e-11;8!CL:0002334;7.76e-11;12!CL:0000134;1.17e-08;55!CL:0000569;3.45e-08;4!CL:0002556;5.91e-08;6!CL:0000723;6.27e-08;61!CL:0002620;7.28e-08;23!CL:0000048;1.15e-07;58!CL:0002320;2.82e-07;188!CL:0002551;4.12e-07;6|ontology_enrichment_celltype_v019_2=CL:0000057,1.65e-24,76;CL:0000048,1.52e-16,427;CL:0000723,5.71e-16,433;CL:0000034,3.14e-15,441;CL:0000134,4.08e-15,354;CL:0002320,5.52e-15,361;CL:0000219,4.21e-13,386;CL:0002570,4.49e-11,8;CL:0002334,8.18e-11,12;CL:0000569,2.93e-08,4;CL:0000011,2.93e-08,4;CL:0002556,3.88e-08,6;CL:0002620,8.28e-08,23;CL:0002551,5.18e-07,6|ontology_enrichment_development_v019=CL:0000011;3.45e-08;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;4.34e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.74e-07,14|ontology_enrichment_uberon=UBERON:0000914!2.37e-14!83;UBERON:0002329!2.37e-14!83;UBERON:0003077!2.37e-14!83;UBERON:0003059!2.37e-14!83;UBERON:0007282!2.37e-14!83;UBERON:0009618!2.37e-14!83;UBERON:0007285!2.37e-14!83;UBERON:0004290!4.19e-12!70;UBERON:0003102!1.48e-10!95;UBERON:0000486!2.01e-10!82;UBERON:0001134!2.48e-09!61;UBERON:0002036!2.48e-09!61;UBERON:0003082!2.48e-09!61;UBERON:0002385!1.16e-08!63;UBERON:0001015!1.16e-08!63;UBERON:0000383!1.16e-08!63;UBERON:0000475!1.51e-08!365;UBERON:0002199!5.03e-08!45;UBERON:0002416!5.03e-08!45;UBERON:0004573!2.03e-07!33;UBERON:0004571!2.03e-07!33;UBERON:0002097!2.71e-07!40;UBERON:0001013!6.91e-07!14;UBERON:0004237!7.76e-07!10;UBERON:0004695!7.76e-07!10;UBERON:0002111!7.76e-07!10;UBERON:0004178!7.76e-07!10;UBERON:0000479!8.48e-07!787|ontology_enrichment_uberon_v019=UBERON:0001013;3.49e-11;14!UBERON:0002384;8.36e-11;198!UBERON:0002119;2.23e-08;4!UBERON:0001758;5.91e-08;6!UBERON:0003672;5.91e-08;6!UBERON:0001434;8.14e-07;36!UBERON:0003129;9.80e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.31e-14,371;UBERON:0001013,2.33e-11,14;UBERON:0003102,1.07e-08,99;UBERON:0002119,1.67e-08,4;UBERON:0001758,3.88e-08,6;UBERON:0003672,3.88e-08,6;UBERON:0003129,6.89e-07,7|phase1_expression=1.63510541343501,2.35510576280081,0.986680828671798,2.00146596706261,0,1.74467704820074,0,0,2.35067065379855,0,0,0,0,0.123766352960047,0,2.01697543935533,2.41077811209591,2.19093027116212,4.39139518911456,0,0.408001382488506,0,0,0.684372125364421,0.125542639594803,1.22261449196722,0.985207073399349,0.472264687882075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,1.50401373190767,1.01392563272577,1.5905718941022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,1.39293562831038,0.264818361626438,2.29469296599051,2.4826786753885,0.560677600142307,1.06748995729705,0,0.311211035399766,0.404132016209064,0.163461903113459,0.151357427644931,0,0,1.24864030732128,0.570471821544449,1.49448680551801,2.11382097558777,2.42809416552197,2.38766371393822,1.42907919878425,3.0708579327942,0.413303124703062,4.75201142912821,7.17074094907815,0,0,3.53505839303539,2.50237039743928,0.831192346452549,1.75591048352335,7.35570709917647,3.75595147266492,0.453728732640084,1.25572744982203,1.06778694409284,0.211931901159562,0,0.309157587715317,0.772921620136887,0.558350568994769,0.843881661206331,1.75386609290158,0.757301322732344,0.368199594569197,1.77810662500693,1.42003837006646,0.906768884048762,1.18692414617341,0,0,0,0,0,0.232387885739037,0,0,0,0,5.78916844373597,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.2933531432838,0.258543431515556,0,2.535908257668,0.531876233169741,2.08014873822732,0.257207374262142,0,1.3321108950805,0.142977993658148,0,0,2.28015329005615,0,0,0,0,0,0,0,0,0.239624855491583,2.29723871668228,0,0.579125226670317,1.2328579353023,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.49076596687656,1.00034104211935,0,7.27898015357825,5.17444067511769,2.99634588564476,8.19989904948992,0.300946099727719,0,1.03473071292505,1.32845119707087,0.368738337083406,1.12948698808508,0.391602314925481,0,0,0,0,0,0,0,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=W | |||
|UniProt=P54821 | |||
|association_with_transcript=372bp_to_ENST00000367760_5end | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_17_at_PRRX1_5end | |||
|id=chr1:170632647..170632659,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.63e-32!180;CL:0000057!2.64e-27!75;CL:0002620!2.57e-12!23;CL:0000048!5.67e-10!430;CL:0002334!2.67e-09!12;CL:0000723!3.00e-09!436;CL:0000680!3.74e-09!57;CL:0000056!3.74e-09!57;CL:0000355!3.74e-09!57;CL:0000034!1.32e-08!444;CL:0000187!4.48e-08!54;CL:0000183!4.36e-07!59;CL:0002539!7.76e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000057;5.15e-11;73!CL:0002570;5.70e-11;8!CL:0002334;7.76e-11;12!CL:0000134;1.17e-08;55!CL:0000569;3.45e-08;4!CL:0002556;5.91e-08;6!CL:0000723;6.27e-08;61!CL:0002620;7.28e-08;23!CL:0000048;1.15e-07;58!CL:0002320;2.82e-07;188!CL:0002551;4.12e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.65e-24,76;CL:0000048,1.52e-16,427;CL:0000723,5.71e-16,433;CL:0000034,3.14e-15,441;CL:0000134,4.08e-15,354;CL:0002320,5.52e-15,361;CL:0000219,4.21e-13,386;CL:0002570,4.49e-11,8;CL:0002334,8.18e-11,12;CL:0000569,2.93e-08,4;CL:0000011,2.93e-08,4;CL:0002556,3.88e-08,6;CL:0002620,8.28e-08,23;CL:0002551,5.18e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000011;3.45e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.34e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.74e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.37e-14!83;UBERON:0002329!2.37e-14!83;UBERON:0003077!2.37e-14!83;UBERON:0003059!2.37e-14!83;UBERON:0007282!2.37e-14!83;UBERON:0009618!2.37e-14!83;UBERON:0007285!2.37e-14!83;UBERON:0004290!4.19e-12!70;UBERON:0003102!1.48e-10!95;UBERON:0000486!2.01e-10!82;UBERON:0001134!2.48e-09!61;UBERON:0002036!2.48e-09!61;UBERON:0003082!2.48e-09!61;UBERON:0002385!1.16e-08!63;UBERON:0001015!1.16e-08!63;UBERON:0000383!1.16e-08!63;UBERON:0000475!1.51e-08!365;UBERON:0002199!5.03e-08!45;UBERON:0002416!5.03e-08!45;UBERON:0004573!2.03e-07!33;UBERON:0004571!2.03e-07!33;UBERON:0002097!2.71e-07!40;UBERON:0001013!6.91e-07!14;UBERON:0004237!7.76e-07!10;UBERON:0004695!7.76e-07!10;UBERON:0002111!7.76e-07!10;UBERON:0004178!7.76e-07!10;UBERON:0000479!8.48e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.49e-11;14!UBERON:0002384;8.36e-11;198!UBERON:0002119;2.23e-08;4!UBERON:0001758;5.91e-08;6!UBERON:0003672;5.91e-08;6!UBERON:0001434;8.14e-07;36!UBERON:0003129;9.80e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.31e-14,371;UBERON:0001013,2.33e-11,14;UBERON:0003102,1.07e-08,99;UBERON:0002119,1.67e-08,4;UBERON:0001758,3.88e-08,6;UBERON:0003672,3.88e-08,6;UBERON:0003129,6.89e-07,7 | |||
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| |||
|short_description=p17@PRRX1 | |||
}} |
Revision as of 01:42, 12 September 2013
Short description: | p17@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | 372bp_to_ENST00000367760_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.65e-24 | 76 |
multi fate stem cell | 1.52e-16 | 427 |
somatic stem cell | 5.71e-16 | 433 |
stem cell | 3.14e-15 | 441 |
mesenchymal cell | 4.08e-15 | 354 |
connective tissue cell | 5.52e-15 | 361 |
motile cell | 4.21e-13 | 386 |
mesenchymal stem cell of adipose | 4.49e-11 | 8 |
preadipocyte | 8.18e-11 | 12 |
cardiac mesenchymal cell | 2.93e-08 | 4 |
migratory trunk neural crest cell | 2.93e-08 | 4 |
fibroblast of periodontium | 3.88e-08 | 6 |
skin fibroblast | 8.28e-08 | 23 |
fibroblast of dermis | 5.18e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.31e-14 | 371 |
adipose tissue | 2.33e-11 | 14 |
surface structure | 1.07e-08 | 99 |
left ovary | 1.67e-08 | 4 |
periodontium | 3.88e-08 | 6 |
dentition | 3.88e-08 | 6 |
skull | 6.89e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.74e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.