FFCP PHASE1:Hg19::chr1:169555684..169555705,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2153|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3542|TSSclassifier=S|UniProt=B4DU26|association_with_transcript=13bp_to_ENST00000546081_5end|coexpression_cluster_id=C3902|description=CAGE_peak_2_at_F5_5end|id=chr1:169555684..169555705,-|ontology_enrichment_celltype=CL:0002057!6.93e-27!42;CL:0000766!5.05e-24!76;CL:0000860!6.73e-24!45;CL:0000738!1.07e-23!140;CL:0002031!2.52e-19!124;CL:0002087!4.18e-19!119;CL:0000839!5.43e-19!70;CL:0000557!4.95e-17!71;CL:0002194!6.84e-17!63;CL:0000576!6.84e-17!63;CL:0000040!6.84e-17!63;CL:0000559!6.84e-17!63;CL:0000037!2.18e-16!172;CL:0000566!2.18e-16!172;CL:0000988!6.73e-16!182;CL:0002009!7.60e-16!65;CL:0002032!3.24e-15!165;CL:0000837!3.24e-15!165;CL:0000763!2.07e-12!112;CL:0000049!2.07e-12!112;CL:0000094!1.13e-07!8|ontology_enrichment_celltype_v019=CL:0000860;2.10e-32;33!CL:0002057;2.10e-32;33!CL:0000473;1.77e-21;39!CL:0000234;1.77e-21;39!CL:0000576;3.64e-18;48!CL:0000766;1.10e-13;69!CL:0000094;6.03e-10;8!CL:0002087;1.37e-08;104!CL:0000081;1.43e-08;11|ontology_enrichment_celltype_v019_2=CL:0000860,1.53e-32,42;CL:0002057,1.53e-32,42;CL:0000766,1.57e-27,72;CL:0000473,9.88e-27,48;CL:0000234,9.88e-27,48;CL:0000738,5.74e-24,136;CL:0002087,6.02e-20,115;CL:0002194,9.26e-20,59;CL:0000576,9.26e-20,59;CL:0000040,9.26e-20,59;CL:0000559,9.26e-20,59;CL:0000839,1.97e-19,66;CL:0000557,6.07e-19,67;CL:0002009,1.06e-18,61;CL:0002031,4.35e-18,120;CL:0000988,1.19e-15,177;CL:0000037,2.64e-15,168;CL:0002032,1.09e-14,161;CL:0000837,1.09e-14,161;CL:0000763,4.24e-13,108;CL:0000049,4.24e-13,108;CL:0000094,6.48e-10,8;CL:0000081,1.52e-08,11|ontology_enrichment_development_v019=CL:0002057;8.73e-24;42!UBERON:0004161;2.32e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.91e-36!115;UBERON:0002390!1.67e-23!102;UBERON:0003061!1.67e-23!102;UBERON:0002193!8.57e-21!112;UBERON:0002405!1.38e-16!115;UBERON:0002371!4.23e-13!80;UBERON:0000178!1.25e-11!15;UBERON:0000179!1.25e-11!15;UBERON:0000463!1.25e-11!15;UBERON:0001474!5.14e-11!86;UBERON:0001049!1.10e-08!57;UBERON:0005068!1.10e-08!57;UBERON:0006241!1.10e-08!57;UBERON:0007135!1.10e-08!57;UBERON:0004765!1.45e-07!101;UBERON:0001434!1.45e-07!101|ontology_enrichment_uberon_v019=UBERON:0000178;2.41e-15;15!UBERON:0000179;2.41e-15;15!UBERON:0000463;2.41e-15;15!UBERON:0002390;2.69e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.06e-27,98;UBERON:0003061,2.06e-27,98;UBERON:0002193,4.44e-25,108;UBERON:0007023,7.54e-16,114;UBERON:0000178,2.60e-15,15;UBERON:0000179,2.60e-15,15;UBERON:0000463,2.60e-15,15;UBERON:0002371,3.74e-15,76;UBERON:0002405,7.60e-15,93;UBERON:0001474,3.98e-13,82;UBERON:0004765,6.88e-11,90;UBERON:0001434,1.15e-08,100;UBERON:0003081,2.19e-08,203|phase1_expression=0.181678379270557,1.71280419112787,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67446920117829,1.31360943119913,2.2826126580967,3.54027849164014,8.44424675813868,4.18003532953405,0,0,0,0,0,0,4.43196326825502,9.22504458362652,7.16135873362311,0.223915474239924,1.29557466407592,0.515151135268373,14.685222116736,3.77875943688809,7.76268995801012,16.967319694115,6.16751832032739,5.88442104700697,25.0292381320271,14.3449995656296,24.3576696785243,12.4108445065183,5.16387746867061,2.70852973188684,13.3652061075249,5.18521685109907,7.41587498668779,13.7737751566906,9.30694178520671,8.31138263538754,19.791078011203,12.1672831149195,12.3605177654481,13.930043454172,6.80862269629368,7.4738669879469,21.8586338773367,16.6874533894464,17.5922964211144,16.345786571101,11.4166067156145,8.86094684834476,1.05627643155971,0.850417199860174,0.209658645508376,12.9177925818469,13.5159203557356,18.1619912967701,0.285012743741249,0,0,0,0.546138611262131,0,2.13365111283254,0,0.574752439954483,0,0,0,0.587237189370939,0,0,1.12101712596307,0,2.9506465517075,1.96505381374582,9.25206745497792,16.8858360344585,6.19252306603822,8.04861269749047,1.94826728407911,11.5866875160581,15.6141130961664,28.3563385067035,38.1833447908672,27.6677250607458,25.7517508168559,1.80881695064044,0,0.579606171470105,2.81744470007915,4.81573490561484,2.09071047609954,2.49280553934646,4.21542542962113,9.96519591899627,5.56643322442906,2.86708872891687,0,0,4.21610333417764,4.35154477925022,0,1.89421801635213,1.64225599384209,0,0,0.289648807765598,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.523916301990851,0,0,0,0,0.132957960518865,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9068250461638,15.511210565933,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,81.1232222859717,49.1413608338813,50.2171420679193,0.441463099414651,5.28850285735388,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,4.43396914106349,0.17609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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2153 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3542 | |||
|TSSclassifier=S | |||
|UniProt=B4DU26 | |||
|association_with_transcript=13bp_to_ENST00000546081_5end | |||
|coexpression_cluster_id=C3902 | |||
|description=CAGE_peak_2_at_F5_5end | |||
|id=chr1:169555684..169555705,- | |||
|ontology_enrichment_celltype=CL:0002057!6.93e-27!42;CL:0000766!5.05e-24!76;CL:0000860!6.73e-24!45;CL:0000738!1.07e-23!140;CL:0002031!2.52e-19!124;CL:0002087!4.18e-19!119;CL:0000839!5.43e-19!70;CL:0000557!4.95e-17!71;CL:0002194!6.84e-17!63;CL:0000576!6.84e-17!63;CL:0000040!6.84e-17!63;CL:0000559!6.84e-17!63;CL:0000037!2.18e-16!172;CL:0000566!2.18e-16!172;CL:0000988!6.73e-16!182;CL:0002009!7.60e-16!65;CL:0002032!3.24e-15!165;CL:0000837!3.24e-15!165;CL:0000763!2.07e-12!112;CL:0000049!2.07e-12!112;CL:0000094!1.13e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.10e-32;33!CL:0002057;2.10e-32;33!CL:0000473;1.77e-21;39!CL:0000234;1.77e-21;39!CL:0000576;3.64e-18;48!CL:0000766;1.10e-13;69!CL:0000094;6.03e-10;8!CL:0002087;1.37e-08;104!CL:0000081;1.43e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.53e-32,42;CL:0002057,1.53e-32,42;CL:0000766,1.57e-27,72;CL:0000473,9.88e-27,48;CL:0000234,9.88e-27,48;CL:0000738,5.74e-24,136;CL:0002087,6.02e-20,115;CL:0002194,9.26e-20,59;CL:0000576,9.26e-20,59;CL:0000040,9.26e-20,59;CL:0000559,9.26e-20,59;CL:0000839,1.97e-19,66;CL:0000557,6.07e-19,67;CL:0002009,1.06e-18,61;CL:0002031,4.35e-18,120;CL:0000988,1.19e-15,177;CL:0000037,2.64e-15,168;CL:0002032,1.09e-14,161;CL:0000837,1.09e-14,161;CL:0000763,4.24e-13,108;CL:0000049,4.24e-13,108;CL:0000094,6.48e-10,8;CL:0000081,1.52e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;8.73e-24;42!UBERON:0004161;2.32e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.91e-36!115;UBERON:0002390!1.67e-23!102;UBERON:0003061!1.67e-23!102;UBERON:0002193!8.57e-21!112;UBERON:0002405!1.38e-16!115;UBERON:0002371!4.23e-13!80;UBERON:0000178!1.25e-11!15;UBERON:0000179!1.25e-11!15;UBERON:0000463!1.25e-11!15;UBERON:0001474!5.14e-11!86;UBERON:0001049!1.10e-08!57;UBERON:0005068!1.10e-08!57;UBERON:0006241!1.10e-08!57;UBERON:0007135!1.10e-08!57;UBERON:0004765!1.45e-07!101;UBERON:0001434!1.45e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.41e-15;15!UBERON:0000179;2.41e-15;15!UBERON:0000463;2.41e-15;15!UBERON:0002390;2.69e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.06e-27,98;UBERON:0003061,2.06e-27,98;UBERON:0002193,4.44e-25,108;UBERON:0007023,7.54e-16,114;UBERON:0000178,2.60e-15,15;UBERON:0000179,2.60e-15,15;UBERON:0000463,2.60e-15,15;UBERON:0002371,3.74e-15,76;UBERON:0002405,7.60e-15,93;UBERON:0001474,3.98e-13,82;UBERON:0004765,6.88e-11,90;UBERON:0001434,1.15e-08,100;UBERON:0003081,2.19e-08,203 | |||
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| |||
|short_description=p2@F5 | |||
}} |
Revision as of 01:40, 12 September 2013
Short description: | p2@F5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_F5_5end |
Coexpression cluster: | C3902_Hepatocyte_liver_hepatoma_Neutrophils_medulla_placenta_CD4 |
Association with transcript: | 13bp_to_ENST00000546081_5end |
EntrezGene: | F5 |
HGNC: | 3542 |
UniProt: | B4DU26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.53e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-32 | 42 |
myeloid leukocyte | 1.57e-27 | 72 |
defensive cell | 9.88e-27 | 48 |
phagocyte | 9.88e-27 | 48 |
leukocyte | 5.74e-24 | 136 |
nongranular leukocyte | 6.02e-20 | 115 |
monopoietic cell | 9.26e-20 | 59 |
monocyte | 9.26e-20 | 59 |
monoblast | 9.26e-20 | 59 |
promonocyte | 9.26e-20 | 59 |
myeloid lineage restricted progenitor cell | 1.97e-19 | 66 |
granulocyte monocyte progenitor cell | 6.07e-19 | 67 |
macrophage dendritic cell progenitor | 1.06e-18 | 61 |
hematopoietic lineage restricted progenitor cell | 4.35e-18 | 120 |
hematopoietic cell | 1.19e-15 | 177 |
hematopoietic stem cell | 2.64e-15 | 168 |
hematopoietic oligopotent progenitor cell | 1.09e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.09e-14 | 161 |
myeloid cell | 4.24e-13 | 108 |
common myeloid progenitor | 4.24e-13 | 108 |
granulocyte | 6.48e-10 | 8 |
blood cell | 1.52e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.06e-27 | 98 |
blood island | 2.06e-27 | 98 |
hemolymphoid system | 4.44e-25 | 108 |
adult organism | 7.54e-16 | 114 |
blood | 2.60e-15 | 15 |
haemolymphatic fluid | 2.60e-15 | 15 |
organism substance | 2.60e-15 | 15 |
bone marrow | 3.74e-15 | 76 |
immune system | 7.60e-15 | 93 |
bone element | 3.98e-13 | 82 |
skeletal element | 6.88e-11 | 90 |
skeletal system | 1.15e-08 | 100 |
lateral plate mesoderm | 2.19e-08 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.