FFCP PHASE1:Hg19::chr1:161392010..161392029,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C196|description=CAGE_peak_at_chr1:161392010..161392029,+|id=chr1:161392010..161392029,+|ontology_enrichment_celltype=CL:0000066!3.04e-09!254;CL:0002150!5.80e-09!3;CL:0000861!5.80e-09!3;CL:0000039!1.09e-07!7;CL:0000586!1.09e-07!7|ontology_enrichment_celltype_v019=CL:0000039;8.74e-65;7!CL:0000586;8.74e-65;7!CL:0000785;1.54e-29;1!CL:0000819;1.54e-29;1!CL:0000322;1.09e-10;3|ontology_enrichment_celltype_v019_2=CL:0000039,8.06e-65,7;CL:0000586,8.06e-65,7;CL:0000819,1.33e-29,1;CL:0000785,1.54e-15,2;CL:0000955,1.54e-15,2;CL:0000818,1.54e-15,2;CL:0000954,1.54e-15,2;CL:0000816,1.54e-15,2;CL:0000817,8.17e-11,3;CL:0000322,1.20e-10,3|ontology_enrichment_development_v019=UBERON:0009117;1.33e-45;10!UBERON:0005564;1.33e-45;10!CL:0000954;1.66e-15;2|ontology_enrichment_disease=DOID:305!1.40e-27!106;DOID:162!7.15e-24!235;DOID:14566!4.25e-23!239;DOID:0050687!9.66e-22!143;DOID:1749!1.25e-11!14;DOID:4362!2.75e-09!5;DOID:0050686!3.04e-08!137|ontology_enrichment_disease_v019=DOID:0060073;1.54e-29;1!DOID:8675;1.54e-29;1!DOID:3347;3.16e-29;1!DOID:3095;4.05e-21;22!DOID:2994;4.05e-21;22!DOID:3910;2.37e-15;2!DOID:3908;6.39e-07;5|ontology_enrichment_disease_v019_2=DOID:0060073,1.33e-29,1;DOID:8675,1.33e-29,1;DOID:3347,3.16e-29,1;DOID:3095,3.95e-21,22;DOID:2994,3.95e-21,22;DOID:3910,2.74e-15,2;DOID:305,5.42e-07,106;DOID:3908,6.77e-07,5|ontology_enrichment_uberon=UBERON:0001737!1.14e-24!9;UBERON:0001557!6.43e-16!19;UBERON:0000473!2.19e-13!8;UBERON:0000072!5.34e-12!46;UBERON:0008947!1.28e-11!38;UBERON:0003258!1.28e-11!38;UBERON:0000065!6.60e-10!53;UBERON:0003135!1.63e-09!11;UBERON:0003729!3.67e-09!5;UBERON:0001041!1.51e-08!98;UBERON:0001004!2.14e-08!72;UBERON:0000002!9.72e-08!6;UBERON:0001560!9.72e-08!6;UBERON:0003343!4.63e-07!4;UBERON:0004785!4.63e-07!4|ontology_enrichment_uberon_v019=UBERON:0000473;8.52e-57;8!UBERON:0003135;1.57e-41;11!UBERON:0000991;4.29e-22;21!UBERON:0003101;4.05e-21;22!UBERON:0000079;4.05e-21;22!UBERON:0004903;2.37e-15;2!UBERON:0002173;2.37e-15;2!UBERON:0002186;2.37e-15;2!UBERON:0004821;1.09e-10;3!UBERON:0007499;1.09e-10;3!UBERON:0003215;1.09e-10;3!UBERON:0010368;1.09e-10;3!UBERON:0009911;1.09e-10;3!UBERON:0002299;1.09e-10;3!UBERON:0006524;1.09e-10;3!UBERON:0008874;1.09e-10;3!UBERON:0002169;1.09e-10;3!UBERON:0004894;1.09e-10;3!UBERON:0002323;5.43e-10;45!UBERON:0009856;2.43e-08;4!UBERON:0003133;2.89e-08;44!UBERON:0000922;5.52e-08;49|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.93e-57,8;UBERON:0003135,1.49e-41,11;UBERON:0000991,4.18e-22,21;UBERON:0009196,4.18e-22,21;UBERON:0009117,4.18e-22,21;UBERON:0005564,4.18e-22,21;UBERON:0004176,3.95e-21,22;UBERON:0003101,3.95e-21,22;UBERON:0000079,3.95e-21,22;UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3;UBERON:0002323,2.16e-10,46;UBERON:0003133,5.61e-10,48;UBERON:0004458,8.77e-10,49;UBERON:0003886,6.41e-09,54;UBERON:0005156,3.36e-08,59;UBERON:0000990,3.36e-08,59;UBERON:0002553,6.05e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0.474541238222193,0.269662616320329,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0,0,0,0,0,0.494411622680279,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,1.01701460117107,0.472775363535873,0,0.291604613383254,0,0,0,0,0,0.295547618953547,0,0.21787692703798,0.697118721393016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,2.91927662745066,0.391329237864179,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C196 | |||
|description=CAGE_peak_at_chr1:161392010..161392029,+ | |||
|id=chr1:161392010..161392029,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.04e-09!254;CL:0002150!5.80e-09!3;CL:0000861!5.80e-09!3;CL:0000039!1.09e-07!7;CL:0000586!1.09e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;8.74e-65;7!CL:0000586;8.74e-65;7!CL:0000785;1.54e-29;1!CL:0000819;1.54e-29;1!CL:0000322;1.09e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,8.06e-65,7;CL:0000586,8.06e-65,7;CL:0000819,1.33e-29,1;CL:0000785,1.54e-15,2;CL:0000955,1.54e-15,2;CL:0000818,1.54e-15,2;CL:0000954,1.54e-15,2;CL:0000816,1.54e-15,2;CL:0000817,8.17e-11,3;CL:0000322,1.20e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.33e-45;10!UBERON:0005564;1.33e-45;10!CL:0000954;1.66e-15;2 | |||
|ontology_enrichment_disease=DOID:305!1.40e-27!106;DOID:162!7.15e-24!235;DOID:14566!4.25e-23!239;DOID:0050687!9.66e-22!143;DOID:1749!1.25e-11!14;DOID:4362!2.75e-09!5;DOID:0050686!3.04e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.54e-29;1!DOID:8675;1.54e-29;1!DOID:3347;3.16e-29;1!DOID:3095;4.05e-21;22!DOID:2994;4.05e-21;22!DOID:3910;2.37e-15;2!DOID:3908;6.39e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.33e-29,1;DOID:8675,1.33e-29,1;DOID:3347,3.16e-29,1;DOID:3095,3.95e-21,22;DOID:2994,3.95e-21,22;DOID:3910,2.74e-15,2;DOID:305,5.42e-07,106;DOID:3908,6.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.14e-24!9;UBERON:0001557!6.43e-16!19;UBERON:0000473!2.19e-13!8;UBERON:0000072!5.34e-12!46;UBERON:0008947!1.28e-11!38;UBERON:0003258!1.28e-11!38;UBERON:0000065!6.60e-10!53;UBERON:0003135!1.63e-09!11;UBERON:0003729!3.67e-09!5;UBERON:0001041!1.51e-08!98;UBERON:0001004!2.14e-08!72;UBERON:0000002!9.72e-08!6;UBERON:0001560!9.72e-08!6;UBERON:0003343!4.63e-07!4;UBERON:0004785!4.63e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.52e-57;8!UBERON:0003135;1.57e-41;11!UBERON:0000991;4.29e-22;21!UBERON:0003101;4.05e-21;22!UBERON:0000079;4.05e-21;22!UBERON:0004903;2.37e-15;2!UBERON:0002173;2.37e-15;2!UBERON:0002186;2.37e-15;2!UBERON:0004821;1.09e-10;3!UBERON:0007499;1.09e-10;3!UBERON:0003215;1.09e-10;3!UBERON:0010368;1.09e-10;3!UBERON:0009911;1.09e-10;3!UBERON:0002299;1.09e-10;3!UBERON:0006524;1.09e-10;3!UBERON:0008874;1.09e-10;3!UBERON:0002169;1.09e-10;3!UBERON:0004894;1.09e-10;3!UBERON:0002323;5.43e-10;45!UBERON:0009856;2.43e-08;4!UBERON:0003133;2.89e-08;44!UBERON:0000922;5.52e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.93e-57,8;UBERON:0003135,1.49e-41,11;UBERON:0000991,4.18e-22,21;UBERON:0009196,4.18e-22,21;UBERON:0009117,4.18e-22,21;UBERON:0005564,4.18e-22,21;UBERON:0004176,3.95e-21,22;UBERON:0003101,3.95e-21,22;UBERON:0000079,3.95e-21,22;UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3;UBERON:0002323,2.16e-10,46;UBERON:0003133,5.61e-10,48;UBERON:0004458,8.77e-10,49;UBERON:0003886,6.41e-09,54;UBERON:0005156,3.36e-08,59;UBERON:0000990,3.36e-08,59;UBERON:0002553,6.05e-08,61 | |||
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|short_description=p@chr1:161392010..161392029,+ | |||
}} |
Revision as of 01:23, 12 September 2013
Short description: | p@chr1:161392010..161392029, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:161392010..161392029, + |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 8.06e-65 | 7 |
germ cell | 8.06e-65 | 7 |
B-1 B cell | 1.33e-29 | 1 |
mature B cell | 1.54e-15 | 2 |
pre-B-II cell | 1.54e-15 | 2 |
transitional stage B cell | 1.54e-15 | 2 |
small pre-B-II cell | 1.54e-15 | 2 |
immature B cell | 1.54e-15 | 2 |
precursor B cell | 8.17e-11 | 3 |
pneumocyte | 1.20e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 7.93e-57 | 8 |
male reproductive organ | 1.49e-41 | 11 |
gonad | 4.18e-22 | 21 |
indifferent external genitalia | 4.18e-22 | 21 |
indifferent gonad | 4.18e-22 | 21 |
gonad primordium | 4.18e-22 | 21 |
external genitalia | 3.95e-21 | 22 |
male organism | 3.95e-21 | 22 |
male reproductive system | 3.95e-21 | 22 |
bronchoalveolar duct junction | 2.74e-15 | 2 |
alveolar duct | 2.74e-15 | 2 |
bronchiole | 2.74e-15 | 2 |
pulmonary alveolus epithelium | 1.20e-10 | 3 |
alveolus | 1.20e-10 | 3 |
pulmonary lobule | 1.20e-10 | 3 |
lobule | 1.20e-10 | 3 |
alveolus of lung | 1.20e-10 | 3 |
alveolar system | 1.20e-10 | 3 |
pulmonary acinus | 1.20e-10 | 3 |
alveolar sac | 1.20e-10 | 3 |
alveolar wall | 1.20e-10 | 3 |
body cavity | 2.16e-10 | 46 |
reproductive organ | 5.61e-10 | 48 |
body cavity or lining | 8.77e-10 | 49 |
body cavity precursor | 6.41e-09 | 54 |
reproductive structure | 3.36e-08 | 59 |
reproductive system | 3.36e-08 | 59 |
anatomical cavity | 6.05e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.33e-29 | 1 |
lymphosarcoma | 1.33e-29 | 1 |
osteosarcoma | 3.16e-29 | 1 |
germ cell and embryonal cancer | 3.95e-21 | 22 |
germ cell cancer | 3.95e-21 | 22 |
lung adenocarcinoma | 2.74e-15 | 2 |
carcinoma | 5.42e-07 | 106 |
non-small cell lung carcinoma | 6.77e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.