FFCP PHASE1:Hg19::chr19:5914213..5914286,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=828|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1487|TSSclassifier=S|UniProt=Q13938,Q96ET4|association_with_transcript=20bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end|description=CAGE_peak_1_at_CAPS_5end|id=chr19:5914213..5914286,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;2.45e-08;19|ontology_enrichment_celltype_v019_2=CL:0000349,2.64e-08,19|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.47e-21!115;UBERON:0000033!8.57e-20!123;UBERON:0004121!2.53e-19!169;UBERON:0000153!2.76e-19!129;UBERON:0007811!2.76e-19!129;UBERON:0000924!1.20e-18!173;UBERON:0006601!1.20e-18!173;UBERON:0000475!8.34e-17!365;UBERON:0000062!9.25e-16!511;UBERON:0001049!1.08e-15!57;UBERON:0005068!1.08e-15!57;UBERON:0006241!1.08e-15!57;UBERON:0007135!1.08e-15!57;UBERON:0005743!3.21e-15!86;UBERON:0003075!5.77e-15!86;UBERON:0007284!5.77e-15!86;UBERON:0000481!8.42e-15!347;UBERON:0001017!1.16e-14!82;UBERON:0002346!4.99e-14!90;UBERON:0000064!7.85e-14!219;UBERON:0000955!2.18e-13!69;UBERON:0006238!2.18e-13!69;UBERON:0000468!1.17e-12!659;UBERON:0000073!2.08e-12!94;UBERON:0001016!2.08e-12!94;UBERON:0002616!3.78e-12!59;UBERON:0002780!9.97e-12!41;UBERON:0001890!9.97e-12!41;UBERON:0006240!9.97e-12!41;UBERON:0003080!4.71e-11!42;UBERON:0003056!6.33e-11!61;UBERON:0002020!6.14e-10!34;UBERON:0003528!6.14e-10!34;UBERON:0001893!1.46e-09!34;UBERON:0002791!1.95e-09!33;UBERON:0000467!3.79e-09!625;UBERON:0000480!5.63e-09!626;UBERON:0001869!1.50e-08!32;UBERON:0002050!2.93e-08!605;UBERON:0005423!2.93e-08!605;UBERON:0000922!3.46e-08!612;UBERON:0005631!5.26e-08!14;UBERON:0000158!5.26e-08!14;UBERON:0000923!5.88e-08!604;UBERON:0005291!5.88e-08!604;UBERON:0006598!5.88e-08!604;UBERON:0002532!5.88e-08!604;UBERON:0004119!9.11e-08!169;UBERON:0000925!9.11e-08!169;UBERON:0006595!9.11e-08!169;UBERON:0004111!1.38e-07!241;UBERON:0000483!1.41e-07!309;UBERON:0000477!1.64e-07!286;UBERON:0000119!4.49e-07!312;UBERON:0000478!5.56e-07!24|ontology_enrichment_uberon_v019=UBERON:0000073;7.45e-09;53!UBERON:0002616;7.45e-09;53!UBERON:0002780;9.29e-09;41!UBERON:0001890;9.29e-09;41!UBERON:0001893;1.73e-07;34!UBERON:0003528;2.21e-07;34!UBERON:0002020;2.21e-07;34!UBERON:0000478;2.67e-07;24!UBERON:0002791;4.37e-07;32!UBERON:0001869;6.32e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.98e-23,114;UBERON:0004121,3.56e-18,171;UBERON:0000924,3.56e-18,171;UBERON:0006601,3.56e-18,171;UBERON:0001049,3.22e-16,56;UBERON:0005068,3.22e-16,56;UBERON:0006241,3.22e-16,56;UBERON:0007135,3.22e-16,56;UBERON:0003075,6.75e-16,82;UBERON:0007284,6.75e-16,82;UBERON:0010371,3.28e-15,104;UBERON:0001017,3.68e-15,81;UBERON:0000073,1.82e-14,53;UBERON:0002616,1.82e-14,53;UBERON:0002346,3.12e-14,86;UBERON:0010314,1.03e-13,132;UBERON:0000955,4.96e-13,68;UBERON:0006238,4.96e-13,68;UBERON:0001016,1.22e-12,89;UBERON:0011216,9.04e-12,223;UBERON:0003056,4.28e-11,61;UBERON:0002780,9.27e-11,41;UBERON:0001890,9.27e-11,41;UBERON:0003080,9.27e-11,41;UBERON:0006240,9.27e-11,41;UBERON:0005631,2.41e-09,14;UBERON:0000158,2.41e-09,14;UBERON:0003528,4.33e-09,34;UBERON:0002020,4.33e-09,34;UBERON:0001893,1.09e-08,34;UBERON:0002791,6.91e-08,32;UBERON:0001869,1.49e-07,32;UBERON:0000478,2.92e-07,24;UBERON:0003124,3.08e-07,7;UBERON:0003076,5.57e-07,15;UBERON:0003057,5.57e-07,15|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0.522371256399677,4.91467873003018,43.2636724142905,99.8277070634887,215.233854234418,63.2446063625838,28.8315716883287,0,0,0,0,1.47745269692145,1.63200552995402,3.13454721478088,2.0036519099174,1.50561867580173,0.627713197974014,0,0,0,0,0,2.78669021968937,3.67768489791571,1.8072355126695,5.17655614233503,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0.289803085735052,0,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0.255725123687061,28.5536930383807,40.1070328508712,39.1085601194224,9.54343136461319,27.2515527369476,4.82127567536746,7.31707011626461,1.84453049955565,16.4378739749629,7.65020105414339,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,5.66922267785295,0.496971951695318,0.379891534993739,0,0.860509862246441,1.06400514659507,2.24271040056923,0,0.24666754841716,1.24484414159907,0.134710672069688,0,0,0,0.468642863667593,0,2.85235910772225,1.34503812496621,0,0,0,12.0450961040387,3.93069815397658,31.9276663833115,1.18800285728205,2.71993622206413,0,0,2.69337782326506,0.875829639103749,3.60183350129438,2.63386572528503,5.21029252858333,0.901428353439581,0.113432183160021,2.33206526395521,5.76604949810132,1.6954552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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=828 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1487 | |||
|TSSclassifier=S | |||
|UniProt=Q13938,Q96ET4 | |||
|association_with_transcript=20bp_to_ENST00000222125,ENST00000452990,NM_004058,NM_080590,uc002mdt.2,uc002mdu.2_5end | |||
|description=CAGE_peak_1_at_CAPS_5end | |||
|id=chr19:5914213..5914286,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.45e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.64e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000073;7.45e-09;53!UBERON:0002616;7.45e-09;53!UBERON:0002780;9.29e-09;41!UBERON:0001890;9.29e-09;41!UBERON:0001893;1.73e-07;34!UBERON:0003528;2.21e-07;34!UBERON:0002020;2.21e-07;34!UBERON:0000478;2.67e-07;24!UBERON:0002791;4.37e-07;32!UBERON:0001869;6.32e-07;32 | |||
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| |||
|short_description=p1@CAPS | |||
}} |
Revision as of 22:41, 11 September 2013
Short description: | p1@CAPS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CAPS_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000222125, ENST00000452990, NM_004058, NM_080590, uc002mdt.2, uc002mdu.2_5end |
EntrezGene: | CAPS |
HGNC: | 1487 |
UniProt: | Q13938Q96ET4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.64e-08 | 19 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.