FFCP PHASE1:Hg19::chr19:56028958..56028984,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1063|description=CAGE_peak_at_chr19:56028958..56028984,+|id=chr19:56028958..56028984,+|ontology_enrichment_celltype=CL:0000055!3.50e-14!180;CL:0000057!2.29e-12!75;CL:0002620!6.98e-07!23|ontology_enrichment_celltype_v019=CL:0002620;4.16e-10;23!CL:0000499;1.30e-07;28!CL:0000327;2.73e-07;15!CL:0000134;4.74e-07;55!CL:0000048;7.91e-07;58!CL:0002320;8.05e-07;188|ontology_enrichment_celltype_v019_2=CL:0000057,1.15e-14,76;CL:0002620,4.89e-10,23;CL:0000499,1.54e-07,28;CL:0000327,3.15e-07,15;CL:0002570,9.24e-07,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!1.20e-07!14|ontology_enrichment_disease_v019=DOID:2394;6.53e-11;14|ontology_enrichment_disease_v019_2=DOID:2394,2.79e-11,14|ontology_enrichment_uberon=UBERON:0007023!1.07e-09!115;UBERON:0000475!5.30e-09!365;UBERON:0001049!1.44e-07!57;UBERON:0005068!1.44e-07!57;UBERON:0006241!1.44e-07!57;UBERON:0007135!1.44e-07!57;UBERON:0003075!5.26e-07!86;UBERON:0007284!5.26e-07!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.46e-07,46;UBERON:0002416,2.46e-07,46|phase1_expression=0,4.49611100171065,1.9733616573436,1.0007329835313,0,0,0,3.79031924056099,4.44015567939725,0.245733936501509,0,0.218441372130172,0,1.98026164736075,0.662794751455832,2.6893005858071,0.602694528023977,0,1.95173119516203,0.984968464614303,1.02000345622126,1.25381888591235,0.286235987131057,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0.802177789880567,0,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.768482119587302,0,0.344745680736619,0,0,0,0.545812300115692,0,0.612167784741805,0,0,0,0.398927315243264,0,0.580418477257168,0,0,0.75374599577023,0.521482918420201,0.217188844705117,1.21079900526674,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.01210257911091,0.639312809217652,9.03597880961416,3.00802746381534,15.643424047769,8.74814541756209,4.86634870302636,0.189069634328136,1.10864698731282,0.790513071238134,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,5.96366342034382,0.506522046658319,1.19168262731897,8.89193524321323,2.83734705758686,0,0,1.97334038733728,0.933633106199299,0.134710672069688,0.490385709340376,1.51357427644931,0,0.234321431833797,0,0,4.18456305545043,0.23486899728753,0,0,0.408308342509787,0,0.723280468230358,2.37600571456411,5.68713937340681,0,1.43723628363248,0,0.125118519871964,0.277064115484183,0.438977620880838,1.5324389789951,2.10333282469236,0.113432183160021,19.7328599257748,8.11518077510556,8.9011398487016,3.00091096084402,3.19462840639161,25.2487729244717,11.5392450925586,21.6033705268821,5.65134629934952,17.670364197088,4.69454483075727,5.17267381820198,27.6907482162959,3.02256294682921,4.74769658469365,0,0,0,0.365921118388786,0.530119073285941,0.464775771478074,0.518305275076852,0.504641701751257,0.36497735907583,0,14.1513006402435,0,9.28735856063958,2.88751792667834,0,0,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,2.4694440679884,4.41026134156626,0,0,0,0,0,0.857839051492628,0.219500570817251,0,0.100528972411631,0,0.325808305310325,0,0,1.15930404975077,0.821860859650752,0,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,20.6918559916296,0.264145302039678,0.414656231081544,0,0.25248486685276,0.444485260045183,0,0,1.71072446022705,0.205654985406647,3.60411669412701,0.285826432630578,0.448524337381443,0,1.24675085895615,0.517086863031111,46.4953379607447,3.381211010224,4.78688609852767,7.28052058379563,0.771622122786426,1.41849132023278,0.266422179016099,3.57444984145369,7.05408087008876,0,0.65147236858747,0.710783897485092,0,0.301439377059586,0.871533458600294,16.5955165362215,0,0,0,0,0,1.42636905040718,0.723906533337896,0.410952645100767,0,0.224170287987055,0,0,0,2.28685161800217,0,0,0,0,0,0,0,7.97494696174409,4.00136416847742,0.271265023699736,2.49565033836969,18.5566148349048,2.52323864054295,11.4798586692859,0.300946099727719,2.27407504055985,2.0694614258501,3.98535359121262,0.184369168541703,3.82287903659565,8.81105208582333,5.83343820478455,0,0,0,0,0,0.30239029332968,2.48107807818777,5.06424511850606,7.29716245525991,1.92208723883551,1.02341449813341,3.05622450172854,0,2.00472601943452,3.9063579568888,1.23190734020714,2.07701771673448,0.813472649219715,0,0,0.184161977871793,0.459257792658427,0.364182336013434,1.04899531967539,0,0,0,0,1.26661954671451,0,0,0,0,2.16757150035082,1.50506932156456,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,4.82051789532479,1.35339005608971,0,0.15350367472613,0,0.859361958946189,1.16013355131383,0.596586391912706,5.16385806751077,0,0,0.127612712494584,0,3.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1063 | |||
|description=CAGE_peak_at_chr19:56028958..56028984,+ | |||
|id=chr19:56028958..56028984,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.50e-14!180;CL:0000057!2.29e-12!75;CL:0002620!6.98e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.16e-10;23!CL:0000499;1.30e-07;28!CL:0000327;2.73e-07;15!CL:0000134;4.74e-07;55!CL:0000048;7.91e-07;58!CL:0002320;8.05e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.15e-14,76;CL:0002620,4.89e-10,23;CL:0000499,1.54e-07,28;CL:0000327,3.15e-07,15;CL:0002570,9.24e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.20e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.53e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.79e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.07e-09!115;UBERON:0000475!5.30e-09!365;UBERON:0001049!1.44e-07!57;UBERON:0005068!1.44e-07!57;UBERON:0006241!1.44e-07!57;UBERON:0007135!1.44e-07!57;UBERON:0003075!5.26e-07!86;UBERON:0007284!5.26e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.46e-07,46;UBERON:0002416,2.46e-07,46 | |||
|phase1_expression=0,4.49611100171065,1.9733616573436,1.0007329835313,0,0,0,3.79031924056099,4.44015567939725,0.245733936501509,0,0.218441372130172,0,1.98026164736075,0.662794751455832,2.6893005858071,0.602694528023977,0,1.95173119516203,0.984968464614303,1.02000345622126,1.25381888591235,0.286235987131057,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0.802177789880567,0,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.768482119587302,0,0.344745680736619,0,0,0,0.545812300115692,0,0.612167784741805,0,0,0,0.398927315243264,0,0.580418477257168,0,0,0.75374599577023,0.521482918420201,0.217188844705117,1.21079900526674,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.01210257911091,0.639312809217652,9.03597880961416,3.00802746381534,15.643424047769,8.74814541756209,4.86634870302636,0.189069634328136,1.10864698731282,0.790513071238134,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,5.96366342034382,0.506522046658319,1.19168262731897,8.89193524321323,2.83734705758686,0,0,1.97334038733728,0.933633106199299,0.134710672069688,0.490385709340376,1.51357427644931,0,0.234321431833797,0,0,4.18456305545043,0.23486899728753,0,0,0.408308342509787,0,0.723280468230358,2.37600571456411,5.68713937340681,0,1.43723628363248,0,0.125118519871964,0.277064115484183,0.438977620880838,1.5324389789951,2.10333282469236,0.113432183160021,19.7328599257748,8.11518077510556,8.9011398487016,3.00091096084402,3.19462840639161,25.2487729244717,11.5392450925586,21.6033705268821,5.65134629934952,17.670364197088,4.69454483075727,5.17267381820198,27.6907482162959,3.02256294682921,4.74769658469365,0,0,0,0.365921118388786,0.530119073285941,0.464775771478074,0.518305275076852,0.504641701751257,0.36497735907583,0,14.1513006402435,0,9.28735856063958,2.88751792667834,0,0,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,2.4694440679884,4.41026134156626,0,0,0,0,0,0.857839051492628,0.219500570817251,0,0.100528972411631,0,0.325808305310325,0,0,1.15930404975077,0.821860859650752,0,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,20.6918559916296,0.264145302039678,0.414656231081544,0,0.25248486685276,0.444485260045183,0,0,1.71072446022705,0.205654985406647,3.60411669412701,0.285826432630578,0.448524337381443,0,1.24675085895615,0.517086863031111,46.4953379607447,3.381211010224,4.78688609852767,7.28052058379563,0.771622122786426,1.41849132023278,0.266422179016099,3.57444984145369,7.05408087008876,0,0.65147236858747,0.710783897485092,0,0.301439377059586,0.871533458600294,16.5955165362215,0,0,0,0,0,1.42636905040718,0.723906533337896,0.410952645100767,0,0.224170287987055,0,0,0,2.28685161800217,0,0,0,0,0,0,0,7.97494696174409,4.00136416847742,0.271265023699736,2.49565033836969,18.5566148349048,2.52323864054295,11.4798586692859,0.300946099727719,2.27407504055985,2.0694614258501,3.98535359121262,0.184369168541703,3.82287903659565,8.81105208582333,5.83343820478455,0,0,0,0,0,0.30239029332968,2.48107807818777,5.06424511850606,7.29716245525991,1.92208723883551,1.02341449813341,3.05622450172854,0,2.00472601943452,3.9063579568888,1.23190734020714,2.07701771673448,0.813472649219715,0,0,0.184161977871793,0.459257792658427,0.364182336013434,1.04899531967539,0,0,0,0,1.26661954671451,0,0,0,0,2.16757150035082,1.50506932156456,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,4.82051789532479,1.35339005608971,0,0.15350367472613,0,0.859361958946189,1.16013355131383,0.596586391912706,5.16385806751077,0,0,0.127612712494584,0,3.253918845081,15.4258049947014,0,0,1.06461206063404,1.73986598415015,0.18532421910392,0,0,0.316379424718726,0,1.02359116524534,2.1396949401696,0,0.78494864019923,0.359744915166629,1.09814811894422,0.235624804691373,0,0,0,0.975267478179181,1.46228093778771,0,1.63799893689583,4.52497382251881,0,0.551365343546124,2.65375590096488,0.438450885253763,1.15755106853338,0.655894752046633,0,0.6196469961995,0,0.717056761020258,0.294747123039363,0,2.12856638442359,7.81098250601357,13.501090611356,0.379473173765715,0,0,0,1.08890984861323,0.564862804660675,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0.185803175125719,0,0,0,0,0,4.23347165447766,0.649243880549111,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,1.39203086947621,0,0,0,0,0,1.46508179271894,0.121360521749513,0,0,0,0,0,1.9882952955326,1.68803299692615,0,0,0,4.5827037297746,0.276283915531148,0,0.409074730008619,0,0.933118762985422,0,0.179021174675609,0,2.36744173528641,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,1.77148277162768,1.4471572635049,0,1.99042667876204,0.886642856860642,0.219385397153973,0,0,6.00212016329617,0.113942055847001,0,0,0,0,0.824378340616761,0.533034776018635,0,0.941881538370149,0,0,0,0,0,0.158936578980379,0,0.163232808159148,0,0,3.98104772431402,0.884575645033392,0.611030144933625,0,0.1235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| |||
|short_description=p@chr19:56028958..56028984,+ | |||
}} |
Revision as of 22:29, 11 September 2013
Short description: | p@chr19:56028958..56028984, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:56028958..56028984, + |
Coexpression cluster: | C1063_tenocyte_Mesenchymal_Fibroblast_Chondrocyte_mesenchymal_Olfactory_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.15e-14 | 76 |
skin fibroblast | 4.89e-10 | 23 |
stromal cell | 1.54e-07 | 28 |
extracellular matrix secreting cell | 3.15e-07 | 15 |
mesenchymal stem cell of adipose | 9.24e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
integument | 2.46e-07 | 46 |
integumental system | 2.46e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.79e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.