FFCP PHASE1:Hg19::chr19:41727090..41727118,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3795|description=CAGE_peak_at_chr19:41727090..41727118,+|id=chr19:41727090..41727118,+|ontology_enrichment_celltype=CL:0000055!4.59e-23!180;CL:0000222!4.42e-15!119;CL:0000057!1.29e-12!75;CL:0002321!2.02e-12!248;CL:0000220!3.14e-12!246;CL:0000183!9.84e-12!59;CL:0000680!1.26e-10!57;CL:0000056!1.26e-10!57;CL:0000355!1.26e-10!57;CL:0000187!2.28e-10!54;CL:0000393!7.37e-09!60;CL:0000211!7.37e-09!60;CL:0000359!2.24e-08!32;CL:0000192!2.35e-08!42;CL:0000514!2.35e-08!42;CL:0000548!3.13e-07!679;CL:0000004!3.13e-07!679;CL:0000255!3.13e-07!679;CL:0000012!7.78e-07!682|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-13,76;CL:0000222,1.08e-09,121;CL:0000077,9.49e-07,19|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003914!5.40e-14!118;UBERON:0000914!7.88e-14!83;UBERON:0002329!7.88e-14!83;UBERON:0003077!7.88e-14!83;UBERON:0003059!7.88e-14!83;UBERON:0007282!7.88e-14!83;UBERON:0009618!7.88e-14!83;UBERON:0007285!7.88e-14!83;UBERON:0005256!1.27e-13!143;UBERON:0001981!1.07e-12!60;UBERON:0007500!1.07e-12!60;UBERON:0004537!1.07e-12!60;UBERON:0006965!1.07e-12!60;UBERON:0000119!1.27e-12!312;UBERON:0004872!3.63e-12!84;UBERON:0000483!4.84e-12!309;UBERON:0002049!9.76e-12!79;UBERON:0007798!9.76e-12!79;UBERON:0001637!1.31e-11!42;UBERON:0003509!1.31e-11!42;UBERON:0004572!1.31e-11!42;UBERON:0000481!1.54e-11!347;UBERON:0004290!1.56e-11!70;UBERON:0000490!7.23e-11!138;UBERON:0000486!1.04e-10!82;UBERON:0000055!2.19e-10!69;UBERON:0000477!2.66e-10!286;UBERON:0000475!8.28e-10!365;UBERON:0001134!6.90e-09!61;UBERON:0002036!6.90e-09!61;UBERON:0003082!6.90e-09!61;UBERON:0002385!1.11e-08!63;UBERON:0001015!1.11e-08!63;UBERON:0000383!1.11e-08!63;UBERON:0002100!1.24e-08!216;UBERON:0004573!1.32e-08!33;UBERON:0004571!1.32e-08!33;UBERON:0003104!1.54e-08!238;UBERON:0009142!1.54e-08!238;UBERON:0004535!2.66e-08!110;UBERON:0001009!7.31e-08!113;UBERON:0000025!3.69e-07!194;UBERON:0000468!7.33e-07!659;UBERON:0003102!7.93e-07!95|ontology_enrichment_uberon_v019=UBERON:0002067;3.55e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.65e-08,78;UBERON:0007524,3.62e-07,73;UBERON:0000486,6.16e-07,83;UBERON:0002067,6.24e-07,9;UBERON:0004016,6.24e-07,9;UBERON:0010083,6.24e-07,9;UBERON:0002329,8.41e-07,71;UBERON:0003059,8.41e-07,71;UBERON:0007282,8.41e-07,71;UBERON:0004290,8.41e-07,71;UBERON:0009618,8.41e-07,71|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0.697801167972428,0.436882744260345,0.527533956456907,0.74259811776028,3.31397375727916,2.01697543935533,1.80808358407193,0.730310090387373,0.487932798790507,0.123121058076788,2.24400760368678,0,0.572471974262113,1.36874425072884,0.627713197974014,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0.722878304769133,0.50133791063589,1.59331170856906,0,1.45990461090791,0.661743720148475,0.886917589850256,1.05401742831751,0.0654895377488563,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0.838998872419812,1.6507082516404,1.46296476575767,0,0,0,0,0,0.732186172644509,0.735326160691737,0.81014194788176,0.535798369704479,0.44905874525234,1.0135033243499,1.53316637465883,0.949265659568129,0.916008719652036,0,0,0,0,1.64619665163954,0.132409180813219,1.14734648299525,2.12801029319014,1.68203280042692,0,0.49333509683432,0,0.67355336034844,0.163461903113459,0.302714855289863,0,0.234321431833797,0.624320153660641,0,1.19558944441441,1.05691048779388,1.45685649931318,1.26405726032024,0.61246251376468,2.7023549808589,0.516628905878827,0,2.71993622206413,0,0.718618141816238,0,1.87677779807946,0,2.63386572528503,3.67785354958824,1.80285670687916,0.453728732640084,1.25572744982203,0,0.423863802319124,2.40072876867522,0.618315175430633,1.28820270022815,0.18611685633159,0,0.68205903612839,1.7670364197088,0.460249493211497,0.484938170456436,3.90510551768276,0.503760491138201,0.508681776931463,0,0.272746120590835,0,0.365921118388786,0.132529768321485,0.464775771478074,0.414644220061482,0.252320850875628,0.36497735907583,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,1.44375896333917,0.473227200159376,0.168584690078102,0.241011029883482,0.441175890929576,0.653638332277218,0.474541238222193,0.404493924480493,0.196221465125346,0.38474715694639,0,1.40241773803446,0,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0.201057944823262,0.277765335475589,0.651616610620649,3.11980435583874,2.8866268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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3795 | |||
|description=CAGE_peak_at_chr19:41727090..41727118,+ | |||
|id=chr19:41727090..41727118,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.59e-23!180;CL:0000222!4.42e-15!119;CL:0000057!1.29e-12!75;CL:0002321!2.02e-12!248;CL:0000220!3.14e-12!246;CL:0000183!9.84e-12!59;CL:0000680!1.26e-10!57;CL:0000056!1.26e-10!57;CL:0000355!1.26e-10!57;CL:0000187!2.28e-10!54;CL:0000393!7.37e-09!60;CL:0000211!7.37e-09!60;CL:0000359!2.24e-08!32;CL:0000192!2.35e-08!42;CL:0000514!2.35e-08!42;CL:0000548!3.13e-07!679;CL:0000004!3.13e-07!679;CL:0000255!3.13e-07!679;CL:0000012!7.78e-07!682 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-13,76;CL:0000222,1.08e-09,121;CL:0000077,9.49e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!5.40e-14!118;UBERON:0000914!7.88e-14!83;UBERON:0002329!7.88e-14!83;UBERON:0003077!7.88e-14!83;UBERON:0003059!7.88e-14!83;UBERON:0007282!7.88e-14!83;UBERON:0009618!7.88e-14!83;UBERON:0007285!7.88e-14!83;UBERON:0005256!1.27e-13!143;UBERON:0001981!1.07e-12!60;UBERON:0007500!1.07e-12!60;UBERON:0004537!1.07e-12!60;UBERON:0006965!1.07e-12!60;UBERON:0000119!1.27e-12!312;UBERON:0004872!3.63e-12!84;UBERON:0000483!4.84e-12!309;UBERON:0002049!9.76e-12!79;UBERON:0007798!9.76e-12!79;UBERON:0001637!1.31e-11!42;UBERON:0003509!1.31e-11!42;UBERON:0004572!1.31e-11!42;UBERON:0000481!1.54e-11!347;UBERON:0004290!1.56e-11!70;UBERON:0000490!7.23e-11!138;UBERON:0000486!1.04e-10!82;UBERON:0000055!2.19e-10!69;UBERON:0000477!2.66e-10!286;UBERON:0000475!8.28e-10!365;UBERON:0001134!6.90e-09!61;UBERON:0002036!6.90e-09!61;UBERON:0003082!6.90e-09!61;UBERON:0002385!1.11e-08!63;UBERON:0001015!1.11e-08!63;UBERON:0000383!1.11e-08!63;UBERON:0002100!1.24e-08!216;UBERON:0004573!1.32e-08!33;UBERON:0004571!1.32e-08!33;UBERON:0003104!1.54e-08!238;UBERON:0009142!1.54e-08!238;UBERON:0004535!2.66e-08!110;UBERON:0001009!7.31e-08!113;UBERON:0000025!3.69e-07!194;UBERON:0000468!7.33e-07!659;UBERON:0003102!7.93e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;3.55e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.65e-08,78;UBERON:0007524,3.62e-07,73;UBERON:0000486,6.16e-07,83;UBERON:0002067,6.24e-07,9;UBERON:0004016,6.24e-07,9;UBERON:0010083,6.24e-07,9;UBERON:0002329,8.41e-07,71;UBERON:0003059,8.41e-07,71;UBERON:0007282,8.41e-07,71;UBERON:0004290,8.41e-07,71;UBERON:0009618,8.41e-07,71 | |||
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| |||
|short_description=p@chr19:41727090..41727118,+ | |||
}} |
Revision as of 20:45, 11 September 2013
Short description: | p@chr19:41727090..41727118, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:41727090..41727118, + |
Coexpression cluster: | C3795_lens_Olfactory_mesenchymal_leiomyoma_Fibroblast_mesothelioma_papillary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.04e-13 | 76 |
mesodermal cell | 1.08e-09 | 121 |
mesothelial cell | 9.49e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.65e-08 | 78 |
dense mesenchyme tissue | 3.62e-07 | 73 |
multilaminar epithelium | 6.16e-07 | 83 |
dermis | 6.24e-07 | 9 |
dermatome | 6.24e-07 | 9 |
future dermis | 6.24e-07 | 9 |
somite | 8.41e-07 | 71 |
presomitic mesoderm | 8.41e-07 | 71 |
presumptive segmental plate | 8.41e-07 | 71 |
dermomyotome | 8.41e-07 | 71 |
trunk paraxial mesoderm | 8.41e-07 | 71 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.