FFCP PHASE1:Hg19::chr19:37808831..37808843,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=284459|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4928|TSSclassifier=S|UniProt=F5H6A5|association_with_transcript=18bp_to_ENST00000544914,uc002ofy.2_5end|coexpression_cluster_id=C128|description=CAGE_peak_6_at_HKR1_5end|id=chr19:37808831..37808843,+|ontology_enrichment_celltype=CL:0002322!6.21e-07!5|ontology_enrichment_celltype_v019=CL:0000039;2.58e-22;7!CL:0000586;2.58e-22;7!CL:0002521;7.08e-07;3|ontology_enrichment_celltype_v019_2=CL:0000039,2.59e-22,7;CL:0000586,2.59e-22,7;CL:0002521,6.88e-07,3|ontology_enrichment_development_v019=UBERON:0009117;7.83e-16;10!UBERON:0005564;7.83e-16;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;1.41e-12;22!DOID:2994;1.41e-12;22!DOID:0060084;9.11e-07;3!DOID:127;9.11e-07;3|ontology_enrichment_disease_v019_2=DOID:3095,1.43e-12,22;DOID:2994,1.43e-12,22;DOID:0060084,9.64e-07,3;DOID:127,9.64e-07,3|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000473;1.29e-19;8!UBERON:0003135;1.87e-14;11!UBERON:0000991;7.53e-08;21!UBERON:0003101;1.62e-07;22!UBERON:0000079;1.62e-07;22!UBERON:0000922;3.20e-07;49!UBERON:0002190;7.08e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.29e-19,8;UBERON:0003135,1.87e-14,11;UBERON:0000991,7.53e-08,21;UBERON:0009196,7.53e-08,21;UBERON:0009117,7.53e-08,21;UBERON:0005564,7.53e-08,21;UBERON:0004176,1.62e-07,22;UBERON:0003101,1.62e-07,22;UBERON:0000079,1.62e-07,22;UBERON:0002190,6.88e-07,3|phase1_expression=0,0,0.140954404095971,0,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0.209658645508376,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0.393419540227666,0.393010762749165,0.616804496998528,0,0.651844533267181,0.946895611469467,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0.535081656179426,1.04535523804977,0,0,0.34362744548263,0,0,0,0,0,0,0,0.236777252044017,0,0.604820229674197,1.06976078313403,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,1.46368447355514,0.662648841607426,0.69716365721711,0.621966330092223,0.504641701751257,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0,0.790204397959275,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0.07333828582095,0,0,0,0.531876233169741,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.215627574859517,0.385029108839245,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0.423347165447766,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0.111443384277478,0.284136146806413,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0.254253650292766,0,0.344743373241465,0.291604613383254,0,0,0,0,0.221158519862449,0,0,0.32681539055697,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.202203398942031,0,0,0,0,0.485560759068186,0,1.20990716048664,0,0,0.751617097072463,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.19351266257817,0,0.164230914106418,0,0,0.451961481561065,0,0,0,0.195551382734803,0,0,0,0.144090417154106,0.114536596165916,0,0,0,0.235694034616795,0,0.104602846312333,0.203996435272644,0,0,0.136905378891993,0,0,0.262887354279314,0.279282401272254,0.229160424011684,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0,0.202210631562555,0,0,0,0,0.803765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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=284459 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4928 | |||
|TSSclassifier=S | |||
|UniProt=F5H6A5 | |||
|association_with_transcript=18bp_to_ENST00000544914,uc002ofy.2_5end | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_6_at_HKR1_5end | |||
|id=chr19:37808831..37808843,+ | |||
|ontology_enrichment_celltype=CL:0002322!6.21e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.58e-22;7!CL:0000586;2.58e-22;7!CL:0002521;7.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.59e-22,7;CL:0000586,2.59e-22,7;CL:0002521,6.88e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.83e-16;10!UBERON:0005564;7.83e-16;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.41e-12;22!DOID:2994;1.41e-12;22!DOID:0060084;9.11e-07;3!DOID:127;9.11e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.43e-12,22;DOID:2994,1.43e-12,22;DOID:0060084,9.64e-07,3;DOID:127,9.64e-07,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.29e-19;8!UBERON:0003135;1.87e-14;11!UBERON:0000991;7.53e-08;21!UBERON:0003101;1.62e-07;22!UBERON:0000079;1.62e-07;22!UBERON:0000922;3.20e-07;49!UBERON:0002190;7.08e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.29e-19,8;UBERON:0003135,1.87e-14,11;UBERON:0000991,7.53e-08,21;UBERON:0009196,7.53e-08,21;UBERON:0009117,7.53e-08,21;UBERON:0005564,7.53e-08,21;UBERON:0004176,1.62e-07,22;UBERON:0003101,1.62e-07,22;UBERON:0000079,1.62e-07,22;UBERON:0002190,6.88e-07,3 | |||
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| |||
|short_description=p6@HKR1 | |||
}} |
Revision as of 20:23, 11 September 2013
Short description: | p6@HKR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_HKR1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | 18bp_to_ENST00000544914, uc002ofy.2_5end |
EntrezGene: | HKR1 |
HGNC: | 4928 |
UniProt: | F5H6A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.59e-22 | 7 |
germ cell | 2.59e-22 | 7 |
subcutaneous fat cell | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.29e-19 | 8 |
male reproductive organ | 1.87e-14 | 11 |
gonad | 7.53e-08 | 21 |
indifferent external genitalia | 7.53e-08 | 21 |
indifferent gonad | 7.53e-08 | 21 |
gonad primordium | 7.53e-08 | 21 |
external genitalia | 1.62e-07 | 22 |
male organism | 1.62e-07 | 22 |
male reproductive system | 1.62e-07 | 22 |
subcutaneous adipose tissue | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.43e-12 | 22 |
germ cell cancer | 1.43e-12 | 22 |
cell type benign neoplasm | 9.64e-07 | 3 |
leiomyoma | 9.64e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.