FFCP PHASE1:Hg19::chr19:3063099..3063110,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=166|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=307|TSSclassifier=S|UniProt=Q14CJ1,Q8WY48|association_with_transcript=-135bp_to_ENST00000221561,NM_198969,uc002lxb.1,uc002lxc.2_5end|description=CAGE_peak_19_at_AES_5end|id=chr19:3063099..3063110,-|ontology_enrichment_celltype=CL:0000542!2.38e-24!53;CL:0000051!2.38e-24!53;CL:0000838!6.00e-24!52;CL:0000084!6.12e-16!25;CL:0000827!6.12e-16!25;CL:0000791!1.30e-14!18;CL:0000789!1.30e-14!18;CL:0002420!1.30e-14!18;CL:0002419!1.30e-14!18;CL:0000790!1.30e-14!18;CL:0000625!8.15e-11!11;CL:0002087!4.69e-09!119;CL:0000738!6.41e-08!140;CL:0000945!1.42e-07!24;CL:0000826!1.42e-07!24;CL:0000236!2.33e-07!14|ontology_enrichment_celltype_v019=CL:0000542;2.23e-09;53!CL:0000791;8.31e-08;18!CL:0000789;8.31e-08;18!CL:0002419;8.31e-08;18!CL:0000945;2.21e-07;24!CL:0000084;2.23e-07;25!CL:0000624;8.05e-07;6|ontology_enrichment_celltype_v019_2=CL:0000838,1.32e-14,52;CL:0000542,2.88e-14,53;CL:0000051,2.88e-14,53;CL:0000791,6.82e-08,18;CL:0000789,6.82e-08,18;CL:0002420,6.82e-08,18;CL:0002419,6.82e-08,18;CL:0000790,6.82e-08,18;CL:0000945,1.73e-07,24;CL:0000826,1.73e-07,24;CL:0000084,1.91e-07,25;CL:0000827,1.91e-07,25;CL:0000624,9.12e-07,6|ontology_enrichment_development_v019=CL:0000051;2.23e-09;53!CL:0000790;8.31e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001950!3.20e-14!20;UBERON:0002619!9.61e-14!22;UBERON:0000956!2.53e-11!25;UBERON:0000203!2.53e-11!25;UBERON:0001869!1.08e-10!32;UBERON:0001893!1.51e-10!34;UBERON:0001049!2.45e-10!57;UBERON:0005068!2.45e-10!57;UBERON:0006241!2.45e-10!57;UBERON:0007135!2.45e-10!57;UBERON:0002020!4.49e-10!34;UBERON:0003528!4.49e-10!34;UBERON:0007023!6.83e-10!115;UBERON:0002791!8.02e-10!33;UBERON:0002780!4.41e-09!41;UBERON:0001890!4.41e-09!41;UBERON:0006240!4.41e-09!41;UBERON:0002616!5.61e-09!59;UBERON:0001017!7.06e-09!82;UBERON:0003080!1.11e-08!42;UBERON:0000955!1.89e-08!69;UBERON:0006238!1.89e-08!69;UBERON:0000073!2.20e-08!94;UBERON:0001016!2.20e-08!94;UBERON:0005743!2.31e-08!86|ontology_enrichment_uberon_v019=UBERON:0002370;1.61e-09;2!UBERON:0005058;1.61e-09;2!UBERON:0009113;1.61e-09;2!UBERON:0001950;7.58e-09;20!UBERON:0002021;4.15e-08;5!UBERON:0002619;5.41e-08;22!UBERON:0000956;5.84e-07;25!UBERON:0000203;5.84e-07;25!UBERON:0001869;6.11e-07;32!UBERON:0000200;7.13e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.14e-10,4;UBERON:0005058,3.14e-10,4;UBERON:0009113,3.14e-10,4;UBERON:0003295,3.14e-10,4;UBERON:0005562,3.14e-10,4;UBERON:0001950,1.46e-08,20;UBERON:0002021,7.66e-08,5;UBERON:0002619,9.75e-08,22;UBERON:0003351,5.97e-07,6;UBERON:0000956,9.72e-07,25;UBERON:0000203,9.72e-07,25;UBERON:0000200,9.88e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,1.45185470921107,1.23150884174919,1.33808328233255,0.786728553697808,0.383829398097213,0.309632246632152,0.919421224478927,0,0,0.309868802321207,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0.889509253863555,0.853460445133014,1.60158394814405,1.14950487990897,1.32208974556972,0,1.70763890732835,0.587237189370939,0,0,0.560508562981536,0,1.37696839079683,0.786021525498329,0.411202997999018,1.17030546773475,0.651844533267181,0.946895611469467,0,1.00269411196656,2.3568472597987,1.77227115666897,0.270803863765016,2.43373507478783,1.8208308658383,0.822189523018381,0.276350017785848,1.44901542867526,3.41059095272739,2.67540828089713,4.18142095219907,1.58633079776593,1.14966148080576,2.40539211837841,0.759059076058509,0.637130828648193,1.95325036156926,0.950452044448374,0.752875595388864,1.4078527226986,2.49861453104692,0.947109008176067,0.821127996921047,0.604820229674197,0.534880391567015,0.724122019413995,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.487894824518382,0.397589304964456,0.348581828608555,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.330881918197182,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,1.7658523976586,0.122988438543114,0,0,1.1240175325762,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.600686115687835,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,0.862510299438069,0.898401253958239,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.206768026122887,0.862856803274467,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=166 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=307 | |||
|TSSclassifier=S | |||
|UniProt=Q14CJ1,Q8WY48 | |||
|association_with_transcript=-135bp_to_ENST00000221561,NM_198969,uc002lxb.1,uc002lxc.2_5end | |||
|description=CAGE_peak_19_at_AES_5end | |||
|id=chr19:3063099..3063110,- | |||
|ontology_enrichment_celltype=CL:0000542!2.38e-24!53;CL:0000051!2.38e-24!53;CL:0000838!6.00e-24!52;CL:0000084!6.12e-16!25;CL:0000827!6.12e-16!25;CL:0000791!1.30e-14!18;CL:0000789!1.30e-14!18;CL:0002420!1.30e-14!18;CL:0002419!1.30e-14!18;CL:0000790!1.30e-14!18;CL:0000625!8.15e-11!11;CL:0002087!4.69e-09!119;CL:0000738!6.41e-08!140;CL:0000945!1.42e-07!24;CL:0000826!1.42e-07!24;CL:0000236!2.33e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.23e-09;53!CL:0000791;8.31e-08;18!CL:0000789;8.31e-08;18!CL:0002419;8.31e-08;18!CL:0000945;2.21e-07;24!CL:0000084;2.23e-07;25!CL:0000624;8.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.32e-14,52;CL:0000542,2.88e-14,53;CL:0000051,2.88e-14,53;CL:0000791,6.82e-08,18;CL:0000789,6.82e-08,18;CL:0002420,6.82e-08,18;CL:0002419,6.82e-08,18;CL:0000790,6.82e-08,18;CL:0000945,1.73e-07,24;CL:0000826,1.73e-07,24;CL:0000084,1.91e-07,25;CL:0000827,1.91e-07,25;CL:0000624,9.12e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;2.23e-09;53!CL:0000790;8.31e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!3.20e-14!20;UBERON:0002619!9.61e-14!22;UBERON:0000956!2.53e-11!25;UBERON:0000203!2.53e-11!25;UBERON:0001869!1.08e-10!32;UBERON:0001893!1.51e-10!34;UBERON:0001049!2.45e-10!57;UBERON:0005068!2.45e-10!57;UBERON:0006241!2.45e-10!57;UBERON:0007135!2.45e-10!57;UBERON:0002020!4.49e-10!34;UBERON:0003528!4.49e-10!34;UBERON:0007023!6.83e-10!115;UBERON:0002791!8.02e-10!33;UBERON:0002780!4.41e-09!41;UBERON:0001890!4.41e-09!41;UBERON:0006240!4.41e-09!41;UBERON:0002616!5.61e-09!59;UBERON:0001017!7.06e-09!82;UBERON:0003080!1.11e-08!42;UBERON:0000955!1.89e-08!69;UBERON:0006238!1.89e-08!69;UBERON:0000073!2.20e-08!94;UBERON:0001016!2.20e-08!94;UBERON:0005743!2.31e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.61e-09;2!UBERON:0005058;1.61e-09;2!UBERON:0009113;1.61e-09;2!UBERON:0001950;7.58e-09;20!UBERON:0002021;4.15e-08;5!UBERON:0002619;5.41e-08;22!UBERON:0000956;5.84e-07;25!UBERON:0000203;5.84e-07;25!UBERON:0001869;6.11e-07;32!UBERON:0000200;7.13e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.14e-10,4;UBERON:0005058,3.14e-10,4;UBERON:0009113,3.14e-10,4;UBERON:0003295,3.14e-10,4;UBERON:0005562,3.14e-10,4;UBERON:0001950,1.46e-08,20;UBERON:0002021,7.66e-08,5;UBERON:0002619,9.75e-08,22;UBERON:0003351,5.97e-07,6;UBERON:0000956,9.72e-07,25;UBERON:0000203,9.72e-07,25;UBERON:0000200,9.88e-07,6 | |||
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| |||
|short_description=p19@AES | |||
}} |
Revision as of 19:53, 11 September 2013
Short description: | p19@AES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_AES_5end |
Coexpression cluster: | NA |
Association with transcript: | -135bp_to_ENST00000221561, NM_198969, uc002lxb.1, uc002lxc.2_5end |
EntrezGene: | AES |
HGNC: | 307 |
UniProt: | Q14CJ1Q8WY48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.32e-14 | 52 |
lymphocyte | 2.88e-14 | 53 |
common lymphoid progenitor | 2.88e-14 | 53 |
mature alpha-beta T cell | 6.82e-08 | 18 |
alpha-beta T cell | 6.82e-08 | 18 |
immature T cell | 6.82e-08 | 18 |
mature T cell | 6.82e-08 | 18 |
immature alpha-beta T cell | 6.82e-08 | 18 |
lymphocyte of B lineage | 1.73e-07 | 24 |
pro-B cell | 1.73e-07 | 24 |
T cell | 1.91e-07 | 25 |
pro-T cell | 1.91e-07 | 25 |
CD4-positive, alpha-beta T cell | 9.12e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.14e-10 | 4 |
hemolymphoid system gland | 3.14e-10 | 4 |
thymic region | 3.14e-10 | 4 |
pharyngeal gland | 3.14e-10 | 4 |
thymus primordium | 3.14e-10 | 4 |
neocortex | 1.46e-08 | 20 |
occipital lobe | 7.66e-08 | 5 |
regional part of cerebral cortex | 9.75e-08 | 22 |
pharyngeal epithelium | 5.97e-07 | 6 |
cerebral cortex | 9.72e-07 | 25 |
pallium | 9.72e-07 | 25 |
gyrus | 9.88e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.