FFCP PHASE1:Hg19::chr19:2236509..2236527,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8175|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10766|TSSclassifier=W|UniProt=Q15428,Q05DF2|association_with_transcript=-288bp_to_ENST00000221494,NM_007165,uc002lvg.2_5end|description=CAGE_peak_6_at_SF3A2_5end|id=chr19:2236509..2236527,+|ontology_enrichment_celltype=CL:0002057!3.15e-18!42;CL:0000037!5.68e-17!172;CL:0000566!5.68e-17!172;CL:0000860!6.01e-17!45;CL:0002032!4.94e-16!165;CL:0000837!4.94e-16!165;CL:0000988!1.92e-14!182;CL:0000738!4.93e-14!140;CL:0002031!5.05e-14!124;CL:0002087!6.49e-14!119;CL:0000763!1.80e-13!112;CL:0000049!1.80e-13!112;CL:0000557!2.15e-12!71;CL:0000766!2.78e-12!76;CL:0000839!1.20e-11!70;CL:0002009!3.56e-11!65;CL:0002194!6.28e-11!63;CL:0000576!6.28e-11!63;CL:0000040!6.28e-11!63;CL:0000559!6.28e-11!63;CL:0002393!7.09e-09!9;CL:0002397!7.09e-09!9|ontology_enrichment_celltype_v019=CL:0000875;1.80e-20;3!CL:0002396;1.80e-20;3!CL:0000576;1.52e-10;48!CL:0000766;4.54e-09;69!CL:0002032;1.53e-07;1!CL:0000557;1.53e-07;1|ontology_enrichment_celltype_v019_2=CL:0000875,1.54e-20,3;CL:0002396,1.54e-20,3;CL:0002393,1.05e-17,9;CL:0002397,1.05e-17,9;CL:0000557,3.12e-15,67;CL:0000763,7.97e-15,108;CL:0000049,7.97e-15,108;CL:0002009,1.68e-14,61;CL:0000766,5.64e-14,72;CL:0002194,1.04e-12,59;CL:0000576,1.04e-12,59;CL:0000040,1.04e-12,59;CL:0000559,1.04e-12,59;CL:0002032,1.15e-12,161;CL:0000837,1.15e-12,161;CL:0000037,5.78e-12,168;CL:0000988,3.81e-11,177;CL:0000839,3.82e-11,66;CL:0000738,4.76e-11,136;CL:0000860,1.27e-10,42;CL:0002057,1.27e-10,42;CL:0002031,6.36e-10,120;CL:0000473,4.07e-09,48;CL:0000234,4.07e-09,48;CL:0002087,4.79e-09,115|ontology_enrichment_development_v019=UBERON:0005425;1.53e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.18e-12!112;UBERON:0002390!8.66e-12!102;UBERON:0003061!8.66e-12!102;UBERON:0002371!7.33e-11!80;UBERON:0001474!2.55e-10!86;UBERON:0004765!4.51e-08!101;UBERON:0001434!4.51e-08!101;UBERON:0002405!1.07e-07!115|ontology_enrichment_uberon_v019=UBERON:0000941;1.53e-07;1!UBERON:0001785;1.53e-07;1!UBERON:0002464;1.53e-07;1!UBERON:0004904;1.53e-07;1!UBERON:0001021;1.53e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.96e-13,76;UBERON:0002193,4.10e-13,108;UBERON:0002390,6.47e-13,98;UBERON:0003061,6.47e-13,98;UBERON:0001474,5.58e-12,82;UBERON:0002405,5.99e-12,93;UBERON:0004765,1.10e-10,90;UBERON:0001434,2.33e-09,100;UBERON:0000941,1.01e-07,1;UBERON:0001785,1.01e-07,1;UBERON:0002464,1.01e-07,1;UBERON:0004904,1.01e-07,1;UBERON:0001021,1.01e-07,1;UBERON:0003902,1.01e-07,1;UBERON:0005425,1.01e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0.0821005894499457,0.0787107813136792,1.18009283054671,0.383829398097213,0.77408061658038,0,0.30120591877825,0,0.0774672005803016,0,0.587200878669695,0.553995408531877,0.601633342410425,0.217010870715852,0,0,0,0,0.377875943688809,0.485168122375632,0.232429036905685,0.411167888021826,1.23882548358041,0.863077176966451,0,0.47296445977717,0,0.645484683583826,0,0.564727018627814,0.272906150057846,0.224723484445085,1.22433556948361,0.641858054152187,0.639337125799041,0.659702600373432,0.199463657621632,0,0.580418477257168,0,0,0.75374599577023,1.0429658368404,0.434377689410233,0,1.10483290796269,0.632924774881769,1.26753171787165,1.06302149982522,0.838634582033504,0.673971786878971,0.450530678524519,0.64290234678832,2.28010194992999,2.98375015798635,2.92262646023414,0,0,0,0,0,0,0,0,0,1.17447437874188,1.14681968437569,0,0,0,0.590129310341499,0.786021525498329,0.616804496998528,0.501559486172034,0.651844533267181,0.473447805734733,0,0.111410456885174,0.589211814949674,0.443067789167242,1.08321545506006,0.25618263945135,0.130059347559878,0.164437904603676,0.552700035571697,0.289803085735052,0.444859689486181,0,0,0,0,0.68725489096526,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,1.24930726552346,0,0,0,0,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,1.57174890597255,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,1.33888245105868,0,0.760272105718513,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.435758888184812,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0.925971025153221,0.190254152234598,2.37061319387782,0,0,0,0,0,0.16798212819886,0.283550194484773,0.268675568108545,0,0,0,0,0.207328115540772,0.576479813667846,0.50496973370552,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0.985153801009636,0.646882724578552,0.641715181398742,0.254094624222463,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.41353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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8175 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10766 | |||
|TSSclassifier=W | |||
|UniProt=Q15428,Q05DF2 | |||
|association_with_transcript=-288bp_to_ENST00000221494,NM_007165,uc002lvg.2_5end | |||
|description=CAGE_peak_6_at_SF3A2_5end | |||
|id=chr19:2236509..2236527,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.15e-18!42;CL:0000037!5.68e-17!172;CL:0000566!5.68e-17!172;CL:0000860!6.01e-17!45;CL:0002032!4.94e-16!165;CL:0000837!4.94e-16!165;CL:0000988!1.92e-14!182;CL:0000738!4.93e-14!140;CL:0002031!5.05e-14!124;CL:0002087!6.49e-14!119;CL:0000763!1.80e-13!112;CL:0000049!1.80e-13!112;CL:0000557!2.15e-12!71;CL:0000766!2.78e-12!76;CL:0000839!1.20e-11!70;CL:0002009!3.56e-11!65;CL:0002194!6.28e-11!63;CL:0000576!6.28e-11!63;CL:0000040!6.28e-11!63;CL:0000559!6.28e-11!63;CL:0002393!7.09e-09!9;CL:0002397!7.09e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000875;1.80e-20;3!CL:0002396;1.80e-20;3!CL:0000576;1.52e-10;48!CL:0000766;4.54e-09;69!CL:0002032;1.53e-07;1!CL:0000557;1.53e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000875,1.54e-20,3;CL:0002396,1.54e-20,3;CL:0002393,1.05e-17,9;CL:0002397,1.05e-17,9;CL:0000557,3.12e-15,67;CL:0000763,7.97e-15,108;CL:0000049,7.97e-15,108;CL:0002009,1.68e-14,61;CL:0000766,5.64e-14,72;CL:0002194,1.04e-12,59;CL:0000576,1.04e-12,59;CL:0000040,1.04e-12,59;CL:0000559,1.04e-12,59;CL:0002032,1.15e-12,161;CL:0000837,1.15e-12,161;CL:0000037,5.78e-12,168;CL:0000988,3.81e-11,177;CL:0000839,3.82e-11,66;CL:0000738,4.76e-11,136;CL:0000860,1.27e-10,42;CL:0002057,1.27e-10,42;CL:0002031,6.36e-10,120;CL:0000473,4.07e-09,48;CL:0000234,4.07e-09,48;CL:0002087,4.79e-09,115 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.53e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.18e-12!112;UBERON:0002390!8.66e-12!102;UBERON:0003061!8.66e-12!102;UBERON:0002371!7.33e-11!80;UBERON:0001474!2.55e-10!86;UBERON:0004765!4.51e-08!101;UBERON:0001434!4.51e-08!101;UBERON:0002405!1.07e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.53e-07;1!UBERON:0001785;1.53e-07;1!UBERON:0002464;1.53e-07;1!UBERON:0004904;1.53e-07;1!UBERON:0001021;1.53e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.96e-13,76;UBERON:0002193,4.10e-13,108;UBERON:0002390,6.47e-13,98;UBERON:0003061,6.47e-13,98;UBERON:0001474,5.58e-12,82;UBERON:0002405,5.99e-12,93;UBERON:0004765,1.10e-10,90;UBERON:0001434,2.33e-09,100;UBERON:0000941,1.01e-07,1;UBERON:0001785,1.01e-07,1;UBERON:0002464,1.01e-07,1;UBERON:0004904,1.01e-07,1;UBERON:0001021,1.01e-07,1;UBERON:0003902,1.01e-07,1;UBERON:0005425,1.01e-07,1 | |||
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| |||
|short_description=p6@SF3A2 | |||
}} |
Revision as of 19:43, 11 September 2013
Short description: | p6@SF3A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SF3A2_5end |
Coexpression cluster: | NA |
Association with transcript: | -288bp_to_ENST00000221494, NM_007165, uc002lvg.2_5end |
EntrezGene: | SF3A2 |
HGNC: | 10766 |
UniProt: | Q15428Q05DF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 1.54e-20 | 3 |
CD14-low, CD16-positive monocyte | 1.54e-20 | 3 |
intermediate monocyte | 1.05e-17 | 9 |
CD14-positive, CD16-positive monocyte | 1.05e-17 | 9 |
granulocyte monocyte progenitor cell | 3.12e-15 | 67 |
myeloid cell | 7.97e-15 | 108 |
common myeloid progenitor | 7.97e-15 | 108 |
macrophage dendritic cell progenitor | 1.68e-14 | 61 |
myeloid leukocyte | 5.64e-14 | 72 |
monopoietic cell | 1.04e-12 | 59 |
monocyte | 1.04e-12 | 59 |
monoblast | 1.04e-12 | 59 |
promonocyte | 1.04e-12 | 59 |
hematopoietic oligopotent progenitor cell | 1.15e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.15e-12 | 161 |
hematopoietic stem cell | 5.78e-12 | 168 |
hematopoietic cell | 3.81e-11 | 177 |
myeloid lineage restricted progenitor cell | 3.82e-11 | 66 |
leukocyte | 4.76e-11 | 136 |
classical monocyte | 1.27e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-10 | 42 |
hematopoietic lineage restricted progenitor cell | 6.36e-10 | 120 |
defensive cell | 4.07e-09 | 48 |
phagocyte | 4.07e-09 | 48 |
nongranular leukocyte | 4.79e-09 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.96e-13 | 76 |
hemolymphoid system | 4.10e-13 | 108 |
hematopoietic system | 6.47e-13 | 98 |
blood island | 6.47e-13 | 98 |
bone element | 5.58e-12 | 82 |
immune system | 5.99e-12 | 93 |
skeletal element | 1.10e-10 | 90 |
skeletal system | 2.33e-09 | 100 |
cranial nerve II | 1.01e-07 | 1 |
cranial nerve | 1.01e-07 | 1 |
nerve trunk | 1.01e-07 | 1 |
nerve connecting eye with brain | 1.01e-07 | 1 |
nerve | 1.01e-07 | 1 |
retinal neural layer | 1.01e-07 | 1 |
presumptive neural retina | 1.01e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.