FFCP PHASE1:Hg19::chr19:18508396..18508460,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=126364|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29806|TSSclassifier=S|UniProt=Q8N386|association_with_transcript=0bp_to_ENST00000339007,NM_145256,uc002niw.2,uc002nix.2_5end|coexpression_cluster_id=C299|description=CAGE_peak_1_at_LRRC25_5end|id=chr19:18508396..18508460,-|ontology_enrichment_celltype=CL:0000037!1.82e-41!172;CL:0000566!1.82e-41!172;CL:0000766!5.89e-41!76;CL:0000738!1.48e-40!140;CL:0002032!2.42e-38!165;CL:0000837!2.42e-38!165;CL:0000988!2.05e-37!182;CL:0000763!7.17e-37!112;CL:0000049!7.17e-37!112;CL:0000557!1.50e-34!71;CL:0000839!2.46e-34!70;CL:0002194!2.63e-34!63;CL:0000576!2.63e-34!63;CL:0000040!2.63e-34!63;CL:0000559!2.63e-34!63;CL:0002087!6.01e-34!119;CL:0002009!9.43e-34!65;CL:0002031!1.37e-32!124;CL:0002057!1.86e-32!42;CL:0000860!9.85e-29!45;CL:0002393!1.34e-08!9;CL:0002397!1.34e-08!9;CL:0000094!7.37e-08!8|ontology_enrichment_celltype_v019=CL:0000473;3.13e-28;39!CL:0000234;3.13e-28;39!CL:0000860;3.55e-28;33!CL:0002057;3.55e-28;33!CL:0000576;2.14e-25;48!CL:0000766;2.77e-22;69!CL:0000763;4.56e-13;100!CL:0002087;1.88e-11;104!CL:0000738;3.04e-10;136!CL:0000094;2.27e-09;8!CL:0002393;4.12e-07;6!CL:0002397;4.12e-07;6!CL:0000235;6.43e-07;6!CL:0000988;9.91e-07;177|ontology_enrichment_celltype_v019_2=CL:0000766,3.76e-53,72;CL:0000738,3.49e-46,136;CL:0002194,1.16e-45,59;CL:0000576,1.16e-45,59;CL:0000040,1.16e-45,59;CL:0000559,1.16e-45,59;CL:0000473,1.56e-45,48;CL:0000234,1.56e-45,48;CL:0000557,3.79e-45,67;CL:0002009,4.94e-45,61;CL:0000037,1.06e-43,168;CL:0000839,9.08e-43,66;CL:0000763,2.05e-41,108;CL:0000049,2.05e-41,108;CL:0000860,6.87e-40,42;CL:0002057,6.87e-40,42;CL:0002032,6.96e-40,161;CL:0000837,6.96e-40,161;CL:0002087,1.53e-39,115;CL:0000988,2.29e-39,177;CL:0002031,6.88e-37,120;CL:0002393,2.76e-10,9;CL:0002397,2.76e-10,9;CL:0000094,2.28e-09,8;CL:0000235,6.46e-07,6|ontology_enrichment_development_v019=CL:0002057;1.07e-28;42!CL:0000049;6.26e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.59e-40!102;UBERON:0003061!1.59e-40!102;UBERON:0002193!2.92e-37!112;UBERON:0007023!6.47e-37!115;UBERON:0002371!1.18e-32!80;UBERON:0001474!4.08e-28!86;UBERON:0002405!8.12e-26!115;UBERON:0004765!1.01e-20!101;UBERON:0001434!1.01e-20!101;UBERON:0003081!9.93e-12!216;UBERON:0001049!3.84e-09!57;UBERON:0005068!3.84e-09!57;UBERON:0006241!3.84e-09!57;UBERON:0007135!3.84e-09!57;UBERON:0003080!5.61e-08!42;UBERON:0002780!1.44e-07!41;UBERON:0001890!1.44e-07!41;UBERON:0006240!1.44e-07!41;UBERON:0000178!2.74e-07!15;UBERON:0000179!2.74e-07!15;UBERON:0000463!2.74e-07!15;UBERON:0002616!5.83e-07!59;UBERON:0000479!8.34e-07!787;UBERON:0003075!8.49e-07!86;UBERON:0007284!8.49e-07!86|ontology_enrichment_uberon_v019=UBERON:0000178;3.45e-09;15!UBERON:0000179;3.45e-09;15!UBERON:0000463;3.45e-09;15!UBERON:0002390;5.46e-09;32!UBERON:0007023;3.09e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.86e-53,98;UBERON:0003061,9.86e-53,98;UBERON:0002193,1.36e-47,108;UBERON:0002371,3.99e-42,76;UBERON:0002405,7.90e-39,93;UBERON:0001474,4.40e-37,82;UBERON:0007023,3.80e-32,114;UBERON:0004765,1.85e-31,90;UBERON:0001434,1.51e-26,100;UBERON:0003081,4.21e-17,203;UBERON:0000479,8.53e-10,773;UBERON:0002204,1.15e-09,167;UBERON:0000178,3.46e-09,15;UBERON:0000179,3.46e-09,15;UBERON:0000463,3.46e-09,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,2.59805579543034,1.06730766284929,1.25937250101887,178.587381689402,47.5948453640544,107.287573458041,0,0,0,0.387336002901508,0.995184627411951,4.40400659002271,51.5215729934646,54.9491786068188,72.9156525605262,85.3117956854112,62.5114775416631,77.272670290256,285.562140963065,221.057427057954,298.620979322202,174.321777679263,90.0457674767798,107.468110700601,89.1846416198666,115.016157231566,106.889967909641,53.0908348334393,56.8026521553767,90.735746018209,214.784509418112,155.82941168303,128.766556587033,88.4582448951908,104.943791853883,128.506762285607,236.173530933689,216.816995834714,265.538019581868,47.3041058964592,36.8800396049241,44.8432019276814,81.6558162084416,69.878711068307,100.124057409059,46.010362200136,24.3063239751793,44.3047342417238,371.386793336394,362.702935740364,304.63401192367,236.788754456812,207.694642799803,156.707447029653,453.170262548585,508.431026920874,485.155992398868,8.79981222306614,14.1996038928154,5.33705552318133,12.8019066769952,7.20712776664822,12.0698012390441,13.2208974556972,9.54053754535364,0.569212969109448,2.93618594685469,1.14681968437569,1.32171328579026,3.92355994087075,4.21414535640123,0,0,0.411202997999018,0.668745981562712,0,0,0,0,0,0,0.541607727530031,0.128091319725675,0.390178042679635,0,0,0,0.14828656316206,0.535081656179426,0,0.113309342697566,0,0,0.253019692019503,6.05274287215784,0,0.950452044448374,10.6908334545219,6.01537072425766,22.4875307794223,17.9950711553453,3.28451198768419,0.201606743224732,0,0,2.43806866313962,0,0,0.361439152384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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=126364 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29806 | |||
|TSSclassifier=S | |||
|UniProt=Q8N386 | |||
|association_with_transcript=0bp_to_ENST00000339007,NM_145256,uc002niw.2,uc002nix.2_5end | |||
|coexpression_cluster_id=C299 | |||
|description=CAGE_peak_1_at_LRRC25_5end | |||
|id=chr19:18508396..18508460,- | |||
|ontology_enrichment_celltype=CL:0000037!1.82e-41!172;CL:0000566!1.82e-41!172;CL:0000766!5.89e-41!76;CL:0000738!1.48e-40!140;CL:0002032!2.42e-38!165;CL:0000837!2.42e-38!165;CL:0000988!2.05e-37!182;CL:0000763!7.17e-37!112;CL:0000049!7.17e-37!112;CL:0000557!1.50e-34!71;CL:0000839!2.46e-34!70;CL:0002194!2.63e-34!63;CL:0000576!2.63e-34!63;CL:0000040!2.63e-34!63;CL:0000559!2.63e-34!63;CL:0002087!6.01e-34!119;CL:0002009!9.43e-34!65;CL:0002031!1.37e-32!124;CL:0002057!1.86e-32!42;CL:0000860!9.85e-29!45;CL:0002393!1.34e-08!9;CL:0002397!1.34e-08!9;CL:0000094!7.37e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.13e-28;39!CL:0000234;3.13e-28;39!CL:0000860;3.55e-28;33!CL:0002057;3.55e-28;33!CL:0000576;2.14e-25;48!CL:0000766;2.77e-22;69!CL:0000763;4.56e-13;100!CL:0002087;1.88e-11;104!CL:0000738;3.04e-10;136!CL:0000094;2.27e-09;8!CL:0002393;4.12e-07;6!CL:0002397;4.12e-07;6!CL:0000235;6.43e-07;6!CL:0000988;9.91e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.76e-53,72;CL:0000738,3.49e-46,136;CL:0002194,1.16e-45,59;CL:0000576,1.16e-45,59;CL:0000040,1.16e-45,59;CL:0000559,1.16e-45,59;CL:0000473,1.56e-45,48;CL:0000234,1.56e-45,48;CL:0000557,3.79e-45,67;CL:0002009,4.94e-45,61;CL:0000037,1.06e-43,168;CL:0000839,9.08e-43,66;CL:0000763,2.05e-41,108;CL:0000049,2.05e-41,108;CL:0000860,6.87e-40,42;CL:0002057,6.87e-40,42;CL:0002032,6.96e-40,161;CL:0000837,6.96e-40,161;CL:0002087,1.53e-39,115;CL:0000988,2.29e-39,177;CL:0002031,6.88e-37,120;CL:0002393,2.76e-10,9;CL:0002397,2.76e-10,9;CL:0000094,2.28e-09,8;CL:0000235,6.46e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.07e-28;42!CL:0000049;6.26e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.59e-40!102;UBERON:0003061!1.59e-40!102;UBERON:0002193!2.92e-37!112;UBERON:0007023!6.47e-37!115;UBERON:0002371!1.18e-32!80;UBERON:0001474!4.08e-28!86;UBERON:0002405!8.12e-26!115;UBERON:0004765!1.01e-20!101;UBERON:0001434!1.01e-20!101;UBERON:0003081!9.93e-12!216;UBERON:0001049!3.84e-09!57;UBERON:0005068!3.84e-09!57;UBERON:0006241!3.84e-09!57;UBERON:0007135!3.84e-09!57;UBERON:0003080!5.61e-08!42;UBERON:0002780!1.44e-07!41;UBERON:0001890!1.44e-07!41;UBERON:0006240!1.44e-07!41;UBERON:0000178!2.74e-07!15;UBERON:0000179!2.74e-07!15;UBERON:0000463!2.74e-07!15;UBERON:0002616!5.83e-07!59;UBERON:0000479!8.34e-07!787;UBERON:0003075!8.49e-07!86;UBERON:0007284!8.49e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.45e-09;15!UBERON:0000179;3.45e-09;15!UBERON:0000463;3.45e-09;15!UBERON:0002390;5.46e-09;32!UBERON:0007023;3.09e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.86e-53,98;UBERON:0003061,9.86e-53,98;UBERON:0002193,1.36e-47,108;UBERON:0002371,3.99e-42,76;UBERON:0002405,7.90e-39,93;UBERON:0001474,4.40e-37,82;UBERON:0007023,3.80e-32,114;UBERON:0004765,1.85e-31,90;UBERON:0001434,1.51e-26,100;UBERON:0003081,4.21e-17,203;UBERON:0000479,8.53e-10,773;UBERON:0002204,1.15e-09,167;UBERON:0000178,3.46e-09,15;UBERON:0000179,3.46e-09,15;UBERON:0000463,3.46e-09,15 | |||
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| |||
|short_description=p1@LRRC25 | |||
}} |
Revision as of 19:27, 11 September 2013
Short description: | p1@LRRC25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LRRC25_5end |
Coexpression cluster: | C299_CD14CD16_Eosinophils_Neutrophils_CD14_Whole_Basophils_blood |
Association with transcript: | 0bp_to_ENST00000339007, NM_145256, uc002niw.2, uc002nix.2_5end |
EntrezGene: | LRRC25 |
HGNC: | 29806 |
UniProt: | Q8N386 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.76e-53 | 72 |
leukocyte | 3.49e-46 | 136 |
monopoietic cell | 1.16e-45 | 59 |
monocyte | 1.16e-45 | 59 |
monoblast | 1.16e-45 | 59 |
promonocyte | 1.16e-45 | 59 |
defensive cell | 1.56e-45 | 48 |
phagocyte | 1.56e-45 | 48 |
granulocyte monocyte progenitor cell | 3.79e-45 | 67 |
macrophage dendritic cell progenitor | 4.94e-45 | 61 |
hematopoietic stem cell | 1.06e-43 | 168 |
myeloid lineage restricted progenitor cell | 9.08e-43 | 66 |
myeloid cell | 2.05e-41 | 108 |
common myeloid progenitor | 2.05e-41 | 108 |
classical monocyte | 6.87e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.87e-40 | 42 |
hematopoietic oligopotent progenitor cell | 6.96e-40 | 161 |
hematopoietic multipotent progenitor cell | 6.96e-40 | 161 |
nongranular leukocyte | 1.53e-39 | 115 |
hematopoietic cell | 2.29e-39 | 177 |
hematopoietic lineage restricted progenitor cell | 6.88e-37 | 120 |
intermediate monocyte | 2.76e-10 | 9 |
CD14-positive, CD16-positive monocyte | 2.76e-10 | 9 |
granulocyte | 2.28e-09 | 8 |
macrophage | 6.46e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.86e-53 | 98 |
blood island | 9.86e-53 | 98 |
hemolymphoid system | 1.36e-47 | 108 |
bone marrow | 3.99e-42 | 76 |
immune system | 7.90e-39 | 93 |
bone element | 4.40e-37 | 82 |
adult organism | 3.80e-32 | 114 |
skeletal element | 1.85e-31 | 90 |
skeletal system | 1.51e-26 | 100 |
lateral plate mesoderm | 4.21e-17 | 203 |
tissue | 8.53e-10 | 773 |
musculoskeletal system | 1.15e-09 | 167 |
blood | 3.46e-09 | 15 |
haemolymphatic fluid | 3.46e-09 | 15 |
organism substance | 3.46e-09 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.