FFCP PHASE1:Hg19::chr19:1257244..1257254,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=90007|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=16298|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_AK075506_5end|description=CAGE_peak_17_at_MIDN_5end|id=chr19:1257244..1257254,+|ontology_enrichment_celltype=CL:0000766!3.80e-12!76;CL:0002057!4.31e-12!42;CL:0000557!3.09e-11!71;CL:0000860!4.02e-11!45;CL:0002194!1.35e-10!63;CL:0000576!1.35e-10!63;CL:0000040!1.35e-10!63;CL:0000559!1.35e-10!63;CL:0002009!1.58e-10!65;CL:0000839!5.03e-10!70;CL:0000763!2.21e-07!112;CL:0000049!2.21e-07!112|ontology_enrichment_celltype_v019=CL:0000473;1.29e-10;39!CL:0000234;1.29e-10;39!CL:0000860;9.27e-10;33!CL:0002057;9.27e-10;33!CL:0000766;1.28e-07;69|ontology_enrichment_celltype_v019_2=CL:0000473,4.06e-12,48;CL:0000234,4.06e-12,48;CL:0000766,2.58e-11,72;CL:0000860,5.16e-10,42;CL:0002057,5.16e-10,42;CL:0002194,3.73e-09,59;CL:0000576,3.73e-09,59;CL:0000040,3.73e-09,59;CL:0000559,3.73e-09,59;CL:0000557,3.83e-09,67;CL:0002009,8.97e-09,61;CL:0000763,1.40e-08,108;CL:0000049,1.40e-08,108;CL:0000839,6.35e-08,66|ontology_enrichment_development_v019=CL:0002057;3.44e-08;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3307;5.38e-10;2|ontology_enrichment_disease_v019_2=DOID:3307,3.47e-10,2|ontology_enrichment_uberon=UBERON:0002390!3.59e-09!102;UBERON:0003061!3.59e-09!102;UBERON:0001474!3.96e-09!86;UBERON:0002371!4.02e-09!80;UBERON:0002405!3.71e-08!115;UBERON:0002193!6.87e-08!112;UBERON:0004765!5.94e-07!101;UBERON:0001434!5.94e-07!101|ontology_enrichment_uberon_v019=UBERON:0005090;1.75e-09;2!UBERON:0001630;1.75e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0005090,4.96e-10,2;UBERON:0001630,4.96e-10,2;UBERON:0002390,1.22e-09,98;UBERON:0003061,1.22e-09,98;UBERON:0002371,5.29e-09,76;UBERON:0002193,2.13e-08,108;UBERON:0001474,3.98e-08,82;UBERON:0002405,5.96e-08,93;UBERON:0004765,3.84e-07,90|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,1.18009283054671,0.383829398097213,0.309632246632152,0,0,0,0,0.142169232487422,0,1.10799081706375,0.802177789880567,0.434021741431704,0,0.32389366601898,0,0.436194716338694,1.51150377475524,0.485168122375632,0.929716147622738,1.23350366406548,0.309706370895104,1.1507695692886,1.0246428261164,0,1.37898272294647,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0.306083892370903,0,1.27867425159808,1.31940520074686,0.199463657621632,0.852449501065388,0,1.13477044938228,0,1.50749199154046,1.5644487552606,0.65156653411535,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0.267440195783507,0.579297615531196,0,0,0,0,1.00267582127178,0,0,0,0.0945348171640679,0,0,0,0,0,0.649094787309367,0.348259474598534,0.132957960518865,0,0,0,0,0,0.694281003215189,0,0.419499436209906,0,0,0,0,0,0,0.760272105718513,0,0,0,0.0892997282840798,0.22452937262617,0.450445921933289,0,0,0,0,3.87780264148325,0,0.496971951695318,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0,0.121973706129595,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95394953340702,0,0,0,0.329250856225877,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,1.00451418286425,2.10833939483032,0,0,2.85273810081437,0,0,0,0.112085143993527,0,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,1.65766205374414,0.12269149171914,0.500170521059677,0,0,1.24900292158013,0.630809660135739,0,0,0,0,0,0,0,0,0,1.03384013061444,1.07857100409308,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0.0920809889358963,0,0,0,0,0,0.784349769176855,0,0,0,0,0,1.54227252690289,0,0.501689773854853,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.330569830721956,0,0.382838137483752,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,0,0,0,0,0.192444225451024,0,0,0.564862804660675,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0.411362273086194,0.648473311192717,0,0,0,0,0.490080431962063,0.185803175125719,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.425846237690326,0,0,0,0,0,0.278406173895242,0,0,0,2.81974010175699,0.18714054040822,0.146508179271894,0.242721043499027,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0.211125408127993,0.19924798825107,1.657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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=90007 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16298 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_AK075506_5end | |||
|description=CAGE_peak_17_at_MIDN_5end | |||
|id=chr19:1257244..1257254,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.80e-12!76;CL:0002057!4.31e-12!42;CL:0000557!3.09e-11!71;CL:0000860!4.02e-11!45;CL:0002194!1.35e-10!63;CL:0000576!1.35e-10!63;CL:0000040!1.35e-10!63;CL:0000559!1.35e-10!63;CL:0002009!1.58e-10!65;CL:0000839!5.03e-10!70;CL:0000763!2.21e-07!112;CL:0000049!2.21e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.29e-10;39!CL:0000234;1.29e-10;39!CL:0000860;9.27e-10;33!CL:0002057;9.27e-10;33!CL:0000766;1.28e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.06e-12,48;CL:0000234,4.06e-12,48;CL:0000766,2.58e-11,72;CL:0000860,5.16e-10,42;CL:0002057,5.16e-10,42;CL:0002194,3.73e-09,59;CL:0000576,3.73e-09,59;CL:0000040,3.73e-09,59;CL:0000559,3.73e-09,59;CL:0000557,3.83e-09,67;CL:0002009,8.97e-09,61;CL:0000763,1.40e-08,108;CL:0000049,1.40e-08,108;CL:0000839,6.35e-08,66 | |||
|ontology_enrichment_development_v019=CL:0002057;3.44e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;5.38e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,3.47e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.59e-09!102;UBERON:0003061!3.59e-09!102;UBERON:0001474!3.96e-09!86;UBERON:0002371!4.02e-09!80;UBERON:0002405!3.71e-08!115;UBERON:0002193!6.87e-08!112;UBERON:0004765!5.94e-07!101;UBERON:0001434!5.94e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0005090;1.75e-09;2!UBERON:0001630;1.75e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005090,4.96e-10,2;UBERON:0001630,4.96e-10,2;UBERON:0002390,1.22e-09,98;UBERON:0003061,1.22e-09,98;UBERON:0002371,5.29e-09,76;UBERON:0002193,2.13e-08,108;UBERON:0001474,3.98e-08,82;UBERON:0002405,5.96e-08,93;UBERON:0004765,3.84e-07,90 | |||
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| |||
|short_description=p17@MIDN | |||
}} |
Revision as of 18:46, 11 September 2013
Short description: | p17@MIDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_MIDN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AK075506_5end |
EntrezGene: | MIDN |
HGNC: | 16298 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.06e-12 | 48 |
phagocyte | 4.06e-12 | 48 |
myeloid leukocyte | 2.58e-11 | 72 |
classical monocyte | 5.16e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.16e-10 | 42 |
monopoietic cell | 3.73e-09 | 59 |
monocyte | 3.73e-09 | 59 |
monoblast | 3.73e-09 | 59 |
promonocyte | 3.73e-09 | 59 |
granulocyte monocyte progenitor cell | 3.83e-09 | 67 |
macrophage dendritic cell progenitor | 8.97e-09 | 61 |
myeloid cell | 1.40e-08 | 108 |
common myeloid progenitor | 1.40e-08 | 108 |
myeloid lineage restricted progenitor cell | 6.35e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
muscle structure | 4.96e-10 | 2 |
muscle organ | 4.96e-10 | 2 |
hematopoietic system | 1.22e-09 | 98 |
blood island | 1.22e-09 | 98 |
bone marrow | 5.29e-09 | 76 |
hemolymphoid system | 2.13e-08 | 108 |
bone element | 3.98e-08 | 82 |
immune system | 5.96e-08 | 93 |
skeletal element | 3.84e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
teratoma | 3.47e-10 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.