FFCP PHASE1:Hg19::chr17:48712178..48712189,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8714|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=54|TSSclassifier=S|UniProt=D6RJE5|association_with_transcript=3bp_to_ENST00000513511_5end|coexpression_cluster_id=C2419|description=CAGE_peak_3_at_ABCC3_5end|id=chr17:48712178..48712189,+|ontology_enrichment_celltype=CL:0000066!3.77e-14!254;CL:0000223!1.77e-07!59|ontology_enrichment_celltype_v019=CL:0000235;2.97e-11;6!CL:0000182;6.04e-08;12|ontology_enrichment_celltype_v019_2=CL:0000235,5.43e-11,6;CL:0000182,5.99e-08,12;CL:0000223,1.12e-07,58;CL:0000066,6.97e-07,253|ontology_enrichment_development_v019=UBERON:0001041;2.69e-10;30!UBERON:0009497;5.16e-07;13|ontology_enrichment_disease=DOID:305!8.18e-09!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,3.93e-08,106;DOID:0050687,5.08e-07,143|ontology_enrichment_uberon=UBERON:0001007!2.71e-15!155;UBERON:0001555!2.71e-15!155;UBERON:0007026!2.71e-15!155;UBERON:0004119!3.88e-15!169;UBERON:0000925!3.88e-15!169;UBERON:0006595!3.88e-15!169;UBERON:0004921!3.75e-14!129;UBERON:0004185!3.75e-14!129;UBERON:0000077!3.70e-11!130;UBERON:0001048!9.93e-11!168;UBERON:0002100!2.52e-10!216;UBERON:0001041!2.83e-10!98;UBERON:0000062!3.65e-10!511;UBERON:0000481!1.19e-09!347;UBERON:0005177!1.48e-09!107;UBERON:0005911!1.87e-09!82;UBERON:0003104!2.16e-09!238;UBERON:0009142!2.16e-09!238;UBERON:0000466!7.38e-09!126;UBERON:0000475!1.45e-08!365;UBERON:0009569!1.83e-07!113;UBERON:0000468!1.86e-07!659;UBERON:0000467!5.84e-07!625;UBERON:0000480!7.70e-07!626;UBERON:0009856!8.01e-07!26|ontology_enrichment_uberon_v019=UBERON:0002423;5.06e-08;25!UBERON:0001264;1.27e-07;10!UBERON:0002107;1.93e-07;19!UBERON:0006925;1.93e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0005177,7.95e-11,101;UBERON:0002100,1.17e-08,199;UBERON:0000949,3.10e-08,45;UBERON:0009497,5.30e-08,25;UBERON:0000015,5.30e-08,25;UBERON:0002423,5.30e-08,25;UBERON:0006235,5.30e-08,25;UBERON:0004161,5.30e-08,25;UBERON:0007499,5.90e-08,25;UBERON:0008835,9.70e-08,22;UBERON:0003894,9.70e-08,22;UBERON:0004921,9.86e-08,118;UBERON:0001264,1.29e-07,10;UBERON:0009856,1.50e-07,26;UBERON:0002107,2.00e-07,19;UBERON:0006925,2.00e-07,19;UBERON:0008836,2.00e-07,19;UBERON:0009854,2.64e-07,23;UBERON:0005911,3.64e-07,82|phase1_expression=0.726713517082227,0.642301571672949,0.281908808191942,1.0007329835313,0,0,0,0.631719873426831,1.82829939739887,0,0.697801167972428,0,0,0.247532705920093,0.994192127183747,1.34465029290355,0,0,0,0.123121058076788,0.204000691244253,2.19418305034661,0.572471974262113,0.547497700291537,1.38096903554283,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.739508020333575,0,0,0,0,0.200544447470142,0,1.11957737119962,0.32389366601898,1.03030227053675,0,0.377875943688809,0,0,0,0,0.28769239232215,0,0,0,0.645484683583826,0,0.564727018627814,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0.209658645508376,0,0,0.16072558669708,0.285012743741249,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.383587685530591,0.361439152384566,2.50668955317945,1.44846518960824,1.5905718941022,0.973269740605272,0.0945348171640679,0.221729397462564,0.614843499851882,0.261958150995425,0.364295288292542,0.370784442784429,4.86821090482025,2.96020553408754,3.32394901297163,0,0,0,0.596287222100115,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0.560677600142307,0,0.98667019366864,0.311211035399766,0,0,0,0,0,0.312160076830321,0,0.597794722207204,0.117434498643765,0.161872944368132,0,0.408308342509787,0.122834317311768,1.23990937410919,0,0.494533858557114,0.910161361938026,0,0,0.250237039743928,0.277064115484183,0,0,0.600952235626387,0,0.358779271377724,0,0.211931901159562,0,0.412210116953756,0.515281080091258,0.744467425326359,1.0126579934476,0.0974370051611986,0,0.276149695926898,0.484938170456436,0.355009592516614,0,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,1.92972281457866,0,0.928735856063958,0,0.828147600278907,0.505754070234305,0.964044119533928,0.220587945464788,0,0.474541238222193,0.539325232640658,0,1.15424147083917,0,0,0,0,6.33775174109154,3.9313088667105,4.13552934676983,0,2.7057456479485,1.54411029268673,0.439001141634502,0,0.703702806881416,0.555530670951178,0.977424915930974,0,1.44331342025273,0.811512834825538,0.234817388471643,0.288732895522148,0,0,0.790204397959275,0,1.23108503043699,1.40402559083543,1.33768046059855,0,0.335964256397719,0.283550194484773,0.626909658919938,0.581267877027924,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,3.57656445851882,0,1.06375246633948,1.04007436911366,0.257207374262142,0,0.266422179016099,0.714889968290738,1.08524321078289,0,0.65147236858747,0.355391948742546,0,1.50719688529793,0.871533458600294,0.599837947092342,1.2162378064119,3.01354254859276,2.10833939483032,0,0,1.42636905040718,0.144781306667579,1.2328579353023,0.895304816199478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4185513,0,0|short_description=p3@ABCC3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8714 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=54 | |||
|TSSclassifier=S | |||
|UniProt=D6RJE5 | |||
|association_with_transcript=3bp_to_ENST00000513511_5end | |||
|coexpression_cluster_id=C2419 | |||
|description=CAGE_peak_3_at_ABCC3_5end | |||
|id=chr17:48712178..48712189,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.77e-14!254;CL:0000223!1.77e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000235;2.97e-11;6!CL:0000182;6.04e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,5.43e-11,6;CL:0000182,5.99e-08,12;CL:0000223,1.12e-07,58;CL:0000066,6.97e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.69e-10;30!UBERON:0009497;5.16e-07;13 | |||
|ontology_enrichment_disease=DOID:305!8.18e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.93e-08,106;DOID:0050687,5.08e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.71e-15!155;UBERON:0001555!2.71e-15!155;UBERON:0007026!2.71e-15!155;UBERON:0004119!3.88e-15!169;UBERON:0000925!3.88e-15!169;UBERON:0006595!3.88e-15!169;UBERON:0004921!3.75e-14!129;UBERON:0004185!3.75e-14!129;UBERON:0000077!3.70e-11!130;UBERON:0001048!9.93e-11!168;UBERON:0002100!2.52e-10!216;UBERON:0001041!2.83e-10!98;UBERON:0000062!3.65e-10!511;UBERON:0000481!1.19e-09!347;UBERON:0005177!1.48e-09!107;UBERON:0005911!1.87e-09!82;UBERON:0003104!2.16e-09!238;UBERON:0009142!2.16e-09!238;UBERON:0000466!7.38e-09!126;UBERON:0000475!1.45e-08!365;UBERON:0009569!1.83e-07!113;UBERON:0000468!1.86e-07!659;UBERON:0000467!5.84e-07!625;UBERON:0000480!7.70e-07!626;UBERON:0009856!8.01e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;5.06e-08;25!UBERON:0001264;1.27e-07;10!UBERON:0002107;1.93e-07;19!UBERON:0006925;1.93e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,7.95e-11,101;UBERON:0002100,1.17e-08,199;UBERON:0000949,3.10e-08,45;UBERON:0009497,5.30e-08,25;UBERON:0000015,5.30e-08,25;UBERON:0002423,5.30e-08,25;UBERON:0006235,5.30e-08,25;UBERON:0004161,5.30e-08,25;UBERON:0007499,5.90e-08,25;UBERON:0008835,9.70e-08,22;UBERON:0003894,9.70e-08,22;UBERON:0004921,9.86e-08,118;UBERON:0001264,1.29e-07,10;UBERON:0009856,1.50e-07,26;UBERON:0002107,2.00e-07,19;UBERON:0006925,2.00e-07,19;UBERON:0008836,2.00e-07,19;UBERON:0009854,2.64e-07,23;UBERON:0005911,3.64e-07,82 | |||
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| |||
|short_description=p3@ABCC3 | |||
}} |
Revision as of 14:32, 11 September 2013
Short description: | p3@ABCC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ABCC3_5end |
Coexpression cluster: | C2419_tubular_hepatoma_lung_signet_bile_pleomorphic_Mesenchymal |
Association with transcript: | 3bp_to_ENST00000513511_5end |
EntrezGene: | ABCC3 |
HGNC: | 54 |
UniProt: | D6RJE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 5.43e-11 | 6 |
hepatocyte | 5.99e-08 | 12 |
endodermal cell | 1.12e-07 | 58 |
epithelial cell | 6.97e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 7.95e-11 | 101 |
trunk | 1.17e-08 | 199 |
endocrine system | 3.10e-08 | 45 |
epithelium of foregut-midgut junction | 5.30e-08 | 25 |
anatomical boundary | 5.30e-08 | 25 |
hepatobiliary system | 5.30e-08 | 25 |
foregut-midgut junction | 5.30e-08 | 25 |
septum transversum | 5.30e-08 | 25 |
epithelial sac | 5.90e-08 | 25 |
hepatic diverticulum | 9.70e-08 | 22 |
liver primordium | 9.70e-08 | 22 |
subdivision of digestive tract | 9.86e-08 | 118 |
pancreas | 1.29e-07 | 10 |
sac | 1.50e-07 | 26 |
liver | 2.00e-07 | 19 |
digestive gland | 2.00e-07 | 19 |
liver bud | 2.00e-07 | 19 |
digestive tract diverticulum | 2.64e-07 | 23 |
endo-epithelium | 3.64e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.93e-08 | 106 |
cell type cancer | 5.08e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.