FFCP PHASE1:Hg19::chr17:48272618..48272661,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2197|TSSclassifier=S|UniProt=P02452|association_with_transcript=0bp_to_J00110,K01228_5end|coexpression_cluster_id=C59|description=CAGE_peak_20_at_COL1A1_5end|id=chr17:48272618..48272661,-|ontology_enrichment_celltype=CL:0000055!7.14e-38!180;CL:0000057!3.21e-25!75;CL:0000183!2.31e-15!59;CL:0000680!5.47e-15!57;CL:0000056!5.47e-15!57;CL:0000355!5.47e-15!57;CL:0000187!3.73e-14!54;CL:0000048!8.76e-12!430;CL:0000393!1.50e-11!60;CL:0000211!1.50e-11!60;CL:0000723!4.95e-11!436;CL:0000034!1.84e-10!444;CL:0000192!4.28e-10!42;CL:0000514!4.28e-10!42;CL:0002371!1.12e-08!591;CL:0002334!1.38e-08!12;CL:0002620!2.27e-08!23;CL:0000144!2.47e-08!625;CL:0000222!1.26e-07!119;CL:0000499!1.42e-07!27|ontology_enrichment_celltype_v019=CL:0000134;1.78e-10;55!CL:0002334;5.25e-10;12!CL:0002320;8.04e-10;188!CL:0000057;1.12e-09;73!CL:0000723;1.14e-09;61!CL:0000187;1.19e-09;55!CL:0000048;2.66e-09;58!CL:0000499;2.77e-08;28!CL:0000192;2.96e-08;43!CL:0000393;1.10e-07;61!CL:0000211;1.10e-07;61!CL:0000327;1.40e-07;15!CL:0002620;5.05e-07;23!CL:0000034;9.81e-07;69|ontology_enrichment_celltype_v019_2=CL:0000057,7.75e-26,76;CL:0000048,4.74e-19,427;CL:0000723,5.08e-18,433;CL:0000680,3.42e-17,58;CL:0000056,3.42e-17,58;CL:0000355,3.42e-17,58;CL:0000034,1.05e-16,441;CL:0000187,3.40e-16,55;CL:0000393,3.75e-13,61;CL:0000211,3.75e-13,61;CL:0000192,2.24e-11,43;CL:0000514,2.24e-11,43;CL:0002334,5.50e-10,12;CL:0002320,1.08e-09,361;CL:0000134,2.06e-08,354;CL:0000499,3.21e-08,28;CL:0000222,1.35e-07,121;CL:0000327,1.66e-07,15;CL:0002620,3.76e-07,23|ontology_enrichment_development_v019=CL:0000355;2.88e-10;58!CL:0000514;2.96e-08;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!4.64e-17!83;UBERON:0002329!4.64e-17!83;UBERON:0003077!4.64e-17!83;UBERON:0003059!4.64e-17!83;UBERON:0007282!4.64e-17!83;UBERON:0009618!4.64e-17!83;UBERON:0007285!4.64e-17!83;UBERON:0004290!2.00e-15!70;UBERON:0002385!3.76e-15!63;UBERON:0001015!3.76e-15!63;UBERON:0000383!3.76e-15!63;UBERON:0001134!4.80e-15!61;UBERON:0002036!4.80e-15!61;UBERON:0003082!4.80e-15!61;UBERON:0000486!3.16e-12!82;UBERON:0005256!3.23e-12!143;UBERON:0003102!1.51e-09!95;UBERON:0002100!6.04e-08!216;UBERON:0004872!6.09e-08!84;UBERON:0001013!6.77e-08!14;UBERON:0002199!1.02e-07!45;UBERON:0002416!1.02e-07!45;UBERON:0000475!6.05e-07!365|ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-09;198!UBERON:0001013;3.44e-08;14!UBERON:0004457;2.39e-07;9!UBERON:0000042;2.39e-07;9!UBERON:0003688;2.83e-07;6!UBERON:0002358;2.83e-07;6!UBERON:0003684;2.83e-07;6!UBERON:0001178;2.83e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.61e-17,62;UBERON:0002036,1.61e-17,62;UBERON:0003082,1.61e-17,62;UBERON:0007524,1.28e-16,73;UBERON:0002385,1.91e-16,64;UBERON:0001015,1.91e-16,64;UBERON:0000383,1.91e-16,64;UBERON:0002329,2.00e-16,71;UBERON:0003059,2.00e-16,71;UBERON:0007282,2.00e-16,71;UBERON:0004290,2.00e-16,71;UBERON:0009618,2.00e-16,71;UBERON:0003077,5.92e-16,72;UBERON:0007285,5.92e-16,72;UBERON:0007503,1.12e-15,78;UBERON:0000486,2.52e-13,83;UBERON:0005256,6.78e-12,122;UBERON:0003104,1.96e-10,160;UBERON:0009142,1.96e-10,160;UBERON:0002384,1.09e-09,371;UBERON:0000926,2.73e-08,315;UBERON:0004120,2.73e-08,315;UBERON:0006603,2.73e-08,315;UBERON:0001013,3.09e-08,14;UBERON:0003688,2.87e-07,6;UBERON:0002358,2.87e-07,6;UBERON:0003684,2.87e-07,6;UBERON:0001178,2.87e-07,6;UBERON:0002199,9.22e-07,46;UBERON:0002416,9.22e-07,46|phase1_expression=27.7967920283952,23.7651581518991,49.7569046458778,17.0124607200322,50.9535647647108,16.574431957907,48.126976851979,1.89515962028049,1.30592814099919,0,0.697801167972428,0.436882744260345,7.3854753903967,2.35156070624089,0.994192127183747,2.01697543935533,0.602694528023977,0,0.975865597581014,1.72369481307503,4.08001382488506,5.01527554364941,0.286235987131057,0.136874425072884,0.87879847716362,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,3.35350429851818,2.55725123687061,10.1202962667679,14.0374614978049,12.31195411167,5.5670016293577,11.6792368872633,0.567208902984407,2.4390233720882,2.28370442802128,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0,0,0.732186172644509,0,0,0,0,0,0,0,0.183201743930407,0,0,0,39.7577561356255,19.880990331339,2.64818361626438,67.9802791174689,16.6694139633228,5.60677600142307,4.2699598291882,19.2400687765385,5.91300967259556,4.84958419450877,1.30769522490767,11.8058793563046,4.03323147135999,0.70296429550139,0.936480230490962,0,1.94283284717341,1.64408298101271,0.485618833104395,0.561803226808994,1.22492502752936,0.491337269247072,4.85631171526098,119.988288585487,84.5652898132664,5.46096817162816,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2197 | |||
|TSSclassifier=S | |||
|UniProt=P02452 | |||
|association_with_transcript=0bp_to_J00110,K01228_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_20_at_COL1A1_5end | |||
|id=chr17:48272618..48272661,- | |||
|ontology_enrichment_celltype=CL:0000055!7.14e-38!180;CL:0000057!3.21e-25!75;CL:0000183!2.31e-15!59;CL:0000680!5.47e-15!57;CL:0000056!5.47e-15!57;CL:0000355!5.47e-15!57;CL:0000187!3.73e-14!54;CL:0000048!8.76e-12!430;CL:0000393!1.50e-11!60;CL:0000211!1.50e-11!60;CL:0000723!4.95e-11!436;CL:0000034!1.84e-10!444;CL:0000192!4.28e-10!42;CL:0000514!4.28e-10!42;CL:0002371!1.12e-08!591;CL:0002334!1.38e-08!12;CL:0002620!2.27e-08!23;CL:0000144!2.47e-08!625;CL:0000222!1.26e-07!119;CL:0000499!1.42e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.78e-10;55!CL:0002334;5.25e-10;12!CL:0002320;8.04e-10;188!CL:0000057;1.12e-09;73!CL:0000723;1.14e-09;61!CL:0000187;1.19e-09;55!CL:0000048;2.66e-09;58!CL:0000499;2.77e-08;28!CL:0000192;2.96e-08;43!CL:0000393;1.10e-07;61!CL:0000211;1.10e-07;61!CL:0000327;1.40e-07;15!CL:0002620;5.05e-07;23!CL:0000034;9.81e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.75e-26,76;CL:0000048,4.74e-19,427;CL:0000723,5.08e-18,433;CL:0000680,3.42e-17,58;CL:0000056,3.42e-17,58;CL:0000355,3.42e-17,58;CL:0000034,1.05e-16,441;CL:0000187,3.40e-16,55;CL:0000393,3.75e-13,61;CL:0000211,3.75e-13,61;CL:0000192,2.24e-11,43;CL:0000514,2.24e-11,43;CL:0002334,5.50e-10,12;CL:0002320,1.08e-09,361;CL:0000134,2.06e-08,354;CL:0000499,3.21e-08,28;CL:0000222,1.35e-07,121;CL:0000327,1.66e-07,15;CL:0002620,3.76e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000355;2.88e-10;58!CL:0000514;2.96e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.64e-17!83;UBERON:0002329!4.64e-17!83;UBERON:0003077!4.64e-17!83;UBERON:0003059!4.64e-17!83;UBERON:0007282!4.64e-17!83;UBERON:0009618!4.64e-17!83;UBERON:0007285!4.64e-17!83;UBERON:0004290!2.00e-15!70;UBERON:0002385!3.76e-15!63;UBERON:0001015!3.76e-15!63;UBERON:0000383!3.76e-15!63;UBERON:0001134!4.80e-15!61;UBERON:0002036!4.80e-15!61;UBERON:0003082!4.80e-15!61;UBERON:0000486!3.16e-12!82;UBERON:0005256!3.23e-12!143;UBERON:0003102!1.51e-09!95;UBERON:0002100!6.04e-08!216;UBERON:0004872!6.09e-08!84;UBERON:0001013!6.77e-08!14;UBERON:0002199!1.02e-07!45;UBERON:0002416!1.02e-07!45;UBERON:0000475!6.05e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-09;198!UBERON:0001013;3.44e-08;14!UBERON:0004457;2.39e-07;9!UBERON:0000042;2.39e-07;9!UBERON:0003688;2.83e-07;6!UBERON:0002358;2.83e-07;6!UBERON:0003684;2.83e-07;6!UBERON:0001178;2.83e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.61e-17,62;UBERON:0002036,1.61e-17,62;UBERON:0003082,1.61e-17,62;UBERON:0007524,1.28e-16,73;UBERON:0002385,1.91e-16,64;UBERON:0001015,1.91e-16,64;UBERON:0000383,1.91e-16,64;UBERON:0002329,2.00e-16,71;UBERON:0003059,2.00e-16,71;UBERON:0007282,2.00e-16,71;UBERON:0004290,2.00e-16,71;UBERON:0009618,2.00e-16,71;UBERON:0003077,5.92e-16,72;UBERON:0007285,5.92e-16,72;UBERON:0007503,1.12e-15,78;UBERON:0000486,2.52e-13,83;UBERON:0005256,6.78e-12,122;UBERON:0003104,1.96e-10,160;UBERON:0009142,1.96e-10,160;UBERON:0002384,1.09e-09,371;UBERON:0000926,2.73e-08,315;UBERON:0004120,2.73e-08,315;UBERON:0006603,2.73e-08,315;UBERON:0001013,3.09e-08,14;UBERON:0003688,2.87e-07,6;UBERON:0002358,2.87e-07,6;UBERON:0003684,2.87e-07,6;UBERON:0001178,2.87e-07,6;UBERON:0002199,9.22e-07,46;UBERON:0002416,9.22e-07,46 | |||
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| |||
|short_description=p20@COL1A1 | |||
}} |
Revision as of 14:28, 11 September 2013
Short description: | p20@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_J00110, K01228_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.75e-26 | 76 |
multi fate stem cell | 4.74e-19 | 427 |
somatic stem cell | 5.08e-18 | 433 |
muscle precursor cell | 3.42e-17 | 58 |
myoblast | 3.42e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.42e-17 | 58 |
stem cell | 1.05e-16 | 441 |
muscle cell | 3.40e-16 | 55 |
electrically responsive cell | 3.75e-13 | 61 |
electrically active cell | 3.75e-13 | 61 |
smooth muscle cell | 2.24e-11 | 43 |
smooth muscle myoblast | 2.24e-11 | 43 |
preadipocyte | 5.50e-10 | 12 |
connective tissue cell | 1.08e-09 | 361 |
mesenchymal cell | 2.06e-08 | 354 |
stromal cell | 3.21e-08 | 28 |
mesodermal cell | 1.35e-07 | 121 |
extracellular matrix secreting cell | 1.66e-07 | 15 |
skin fibroblast | 3.76e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.61e-17 | 62 |
striated muscle tissue | 1.61e-17 | 62 |
myotome | 1.61e-17 | 62 |
dense mesenchyme tissue | 1.28e-16 | 73 |
muscle tissue | 1.91e-16 | 64 |
musculature | 1.91e-16 | 64 |
musculature of body | 1.91e-16 | 64 |
somite | 2.00e-16 | 71 |
presomitic mesoderm | 2.00e-16 | 71 |
presumptive segmental plate | 2.00e-16 | 71 |
dermomyotome | 2.00e-16 | 71 |
trunk paraxial mesoderm | 2.00e-16 | 71 |
paraxial mesoderm | 5.92e-16 | 72 |
presumptive paraxial mesoderm | 5.92e-16 | 72 |
epithelial vesicle | 1.12e-15 | 78 |
multilaminar epithelium | 2.52e-13 | 83 |
trunk mesenchyme | 6.78e-12 | 122 |
mesenchyme | 1.96e-10 | 160 |
entire embryonic mesenchyme | 1.96e-10 | 160 |
connective tissue | 1.09e-09 | 371 |
mesoderm | 2.73e-08 | 315 |
mesoderm-derived structure | 2.73e-08 | 315 |
presumptive mesoderm | 2.73e-08 | 315 |
adipose tissue | 3.09e-08 | 14 |
omentum | 2.87e-07 | 6 |
peritoneum | 2.87e-07 | 6 |
abdominal cavity | 2.87e-07 | 6 |
visceral peritoneum | 2.87e-07 | 6 |
integument | 9.22e-07 | 46 |
integumental system | 9.22e-07 | 46 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.