FFCP PHASE1:Hg19::chr17:46908385..46908412,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10241|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29912|TSSclassifier=S|UniProt=E7ETP5,B4DP36,E7ENK0,D6RJE7,E9PBE5,D6REB0|association_with_transcript=0bp_to_ENST00000372317,ENST00000416445,ENST00000448105,ENST00000508679,ENST00000509415,ENST00000509507,ENST00000510356,ENST00000511697,ENST00000513119_5end|description=CAGE_peak_1_at_CALCOCO2_5end|id=chr17:46908385..46908412,+|ontology_enrichment_celltype=CL:0002057!4.88e-25!42;CL:0000860!7.56e-21!45;CL:0000766!1.11e-17!76;CL:0000839!6.41e-15!70;CL:0002194!1.99e-14!63;CL:0000576!1.99e-14!63;CL:0000040!1.99e-14!63;CL:0000559!1.99e-14!63;CL:0002009!2.16e-14!65;CL:0000557!1.48e-13!71;CL:0000763!1.68e-08!112;CL:0000049!1.68e-08!112|ontology_enrichment_celltype_v019=CL:0000860;1.14e-18;33!CL:0002057;1.14e-18;33!CL:0000576;6.37e-15;48!CL:0000473;6.48e-13;39!CL:0000234;6.48e-13;39!CL:0000766;3.40e-11;69|ontology_enrichment_celltype_v019_2=CL:0000860,4.88e-25,42;CL:0002057,4.88e-25,42;CL:0000473,2.24e-21,48;CL:0000234,2.24e-21,48;CL:0000766,2.71e-20,72;CL:0000839,2.25e-17,66;CL:0002194,5.21e-17,59;CL:0000576,5.21e-17,59;CL:0000040,5.21e-17,59;CL:0000559,5.21e-17,59;CL:0002009,6.52e-17,61;CL:0000557,7.94e-16,67;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0002031,2.31e-07,120;CL:0000738,2.56e-07,136|ontology_enrichment_development_v019=CL:0002057;3.67e-18;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.52e-17!115;UBERON:0002390!8.53e-14!102;UBERON:0003061!8.53e-14!102;UBERON:0002371!9.55e-12!80;UBERON:0002193!1.40e-11!112;UBERON:0001474!1.45e-10!86;UBERON:0004765!1.38e-09!101;UBERON:0001434!1.38e-09!101;UBERON:0002405!1.72e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.06e-17,114;UBERON:0002390,1.35e-15,98;UBERON:0003061,1.35e-15,98;UBERON:0002371,1.22e-13,76;UBERON:0002193,4.34e-13,108;UBERON:0001474,3.05e-12,82;UBERON:0004765,5.22e-12,90;UBERON:0001434,2.75e-11,100;UBERON:0002405,7.87e-11,93|phase1_expression=232.366647087042,215.813328082111,266.262869337289,284.20816732289,261.472240239963,177.957058916475,243.167883041578,116.236456710537,94.8103830365414,16.7099076821026,4.88460817580699,28.8342611211827,18.7274554542202,91.4633348374745,77.8783832960602,75.9727415490506,83.7745393953328,67.1885283156383,58.5519358548608,19.0837640019021,13.4640456221207,12.5381888591235,39.5005662240858,26.1430151889209,31.2601172591059,57.6921213397032,54.7610931631138,52.1852480109693,104.634897641808,99.7956435052753,125.86550825597,30.3409004078046,28.3133563651555,69.5137539113561,18.9794641421739,20.898877175651,71.6385071977027,127.418943962332,164.045358030576,137.58489203385,93.1488372838085,103.969866792092,106.378709432919,154.122133106339,170.044174659964,150.887286058822,176.181209974509,171.04584141708,205.335323903454,251.443150889559,206.977850875513,282.832746946748,194.091818254716,211.718976215495,255.956059663306,183.53628105404,182.301308238641,171.4640186316,206.300543457988,219.836383547124,209.702577262086,202.528698314644,190.288329371037,203.309206004095,251.901619129611,211.634688809795,228.575765381376,192.456477586665,192.948679815475,222.618565822745,234.289607519114,292.412442974126,278.170438560537,244.844876835541,215.368155864589,221.399529656845,189.835386637577,224.814808583735,209.264713879598,131.390874864716,199.911260585086,203.122538986273,52.7988733383968,70.451880852815,68.4922125474937,70.4104867234737,61.2605860165099,76.4420745139463,58.1719488050679,68.6918703265462,87.0895842737456,89.8472899737536,76.4546456250458,70.0508041468837,132.280020863643,66.3727893633194,83.9950718386067,71.1349480575988,68.6709006658361,95.7978618588586,72.6806654592907,62.9685581627195,81.8272259313228,97.2613288607565,120.493816157208,127.160455490999,155.170613937354,84.4121796992199,97.5445106699087,103.595879900316,102.249506580764,124.325523780338,79.4815978548644,98.7225655651041,80.4923533298321,85.7751724220576,59.3991765082978,62.8838225233213,91.59312851106,60.5274287215784,58.5975108470777,37.0676297334866,77.9979116822863,85.8790160846147,62.4653632761729,55.879431482388,47.6254238214207,60.4820229674197,64.4530871838253,51.847136590042,104.836952515004,93.8981203585091,91.2938691562806,108.43174571537,111.297016161167,82.4176692887087,123.26932179292,68.128881842369,36.9631135111505,25.2771513107323,25.3842530653134,77.5396126946459,18.2147644146271,23.3594198954191,45.112087718001,47.3632885454007,34.8349856559427,62.4845435679996,49.7635572378711,57.204455204753,45.9141161017089,35.2696183993511,34.3669096591518,38.4409400508327,41.5304441847807,36.0404634941488,35.1111543781842,55.3011864622364,61.9033297074876,59.2455484593466,54.784787126844,53.9793195060144,35.1449362869364,51.4728312484216,45.3679490813785,57.7769241997996,48.2738151146265,48.4229366078286,15.3316637465883,39.8691577018614,25.0986389184658,338.675672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70924612507,77.8311407713133,118.559571964479,82.1760121377122,47.134471789338,129.669912458837,69.7263525320702,55.0997935262081,118.531477478429,64.5456219851264,60.1765788649481,40.5955376446205,101.21104502124,98.9157216792033,57.2718717563987,74.2024193683155,91.1488772570222,62.9718995225495,30.0836144960021,141.450503849153,147.37471998162,91.1013045782835,62.4758271157621,144.103793851259,217.575568275579,128.676708098166,154.127303544828,81.2513710689772,84.6969808534977,94.1469171811427,77.0776771957272,46.1067142675572,59.8060834872879,91.8771379628491,130.141547946152,46.1919834353046,119.395941571674,76.7053325227976,81.1887742982017,223.110038243252,167.826925726789,50.5643557544725,30.6877362971851,53.2006313245893,64.9386205431505,91.5895445600623,98.5045612832091,82.951159417691,101.963884040406,88.8673325486546,99.5292567586962,94.4153121925772,57.5058240045566,118.49883932377,103.198205409563,113.645118706557,183.148335926043,64.250746465656,159.91492278541,145.678522929015,56.8309071355718,83.0565798131128,26.4351593712179,52.9209061929239,46.9734358571396,70.59130127435,152.377556209165,48.7609984720356,114.063405683542,107.531303767947,35.7441145234757,155.66918431373,100.398209065293,137.219618513347,182.386489800831,39.3069826652562,86.322974261411,88.6268346550019,71.4837977626971,81.7518655465919,300.14917079611,55.7573897310793,63.4709210511321,67.1909477186796,77.5252488953674,126.42551233958,32.3431702496028,39.843013251876,17.8903783039555,113.740770710811,77.746958796851,76.7211543528154,78.3054077444058,31.1631069342645,30.8128912937621,29.6474492366763,34.0642691338219,84.7079174691827,49.8070355478859,69.1952808446955,136.477435491049,137.733562900276,125.204585358276,127.636316893579,113.866946335124,65.7057830839923,70.9832119097707,85.9734792997632,46.983250421277,140.151042528519,72.1558364580843,104.504038990541,62.9709273996917,69.237910498996,93.3823114212646,68.8606938050248,60.0756122348992,75.029324152034,28.960842343041,85.9627184160037,105.588424081554,143.511455470685,69.5792464919913,211.044897416807,103.454729905787,73.7307532297436|short_description=p1@CALCOCO2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=10241 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29912 | |||
|TSSclassifier=S | |||
|UniProt=E7ETP5,B4DP36,E7ENK0,D6RJE7,E9PBE5,D6REB0 | |||
|association_with_transcript=0bp_to_ENST00000372317,ENST00000416445,ENST00000448105,ENST00000508679,ENST00000509415,ENST00000509507,ENST00000510356,ENST00000511697,ENST00000513119_5end | |||
|description=CAGE_peak_1_at_CALCOCO2_5end | |||
|id=chr17:46908385..46908412,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.88e-25!42;CL:0000860!7.56e-21!45;CL:0000766!1.11e-17!76;CL:0000839!6.41e-15!70;CL:0002194!1.99e-14!63;CL:0000576!1.99e-14!63;CL:0000040!1.99e-14!63;CL:0000559!1.99e-14!63;CL:0002009!2.16e-14!65;CL:0000557!1.48e-13!71;CL:0000763!1.68e-08!112;CL:0000049!1.68e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-18;33!CL:0002057;1.14e-18;33!CL:0000576;6.37e-15;48!CL:0000473;6.48e-13;39!CL:0000234;6.48e-13;39!CL:0000766;3.40e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.88e-25,42;CL:0002057,4.88e-25,42;CL:0000473,2.24e-21,48;CL:0000234,2.24e-21,48;CL:0000766,2.71e-20,72;CL:0000839,2.25e-17,66;CL:0002194,5.21e-17,59;CL:0000576,5.21e-17,59;CL:0000040,5.21e-17,59;CL:0000559,5.21e-17,59;CL:0002009,6.52e-17,61;CL:0000557,7.94e-16,67;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0002031,2.31e-07,120;CL:0000738,2.56e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.67e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.52e-17!115;UBERON:0002390!8.53e-14!102;UBERON:0003061!8.53e-14!102;UBERON:0002371!9.55e-12!80;UBERON:0002193!1.40e-11!112;UBERON:0001474!1.45e-10!86;UBERON:0004765!1.38e-09!101;UBERON:0001434!1.38e-09!101;UBERON:0002405!1.72e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.06e-17,114;UBERON:0002390,1.35e-15,98;UBERON:0003061,1.35e-15,98;UBERON:0002371,1.22e-13,76;UBERON:0002193,4.34e-13,108;UBERON:0001474,3.05e-12,82;UBERON:0004765,5.22e-12,90;UBERON:0001434,2.75e-11,100;UBERON:0002405,7.87e-11,93 | |||
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| |||
|short_description=p1@CALCOCO2 | |||
}} |
Revision as of 14:18, 11 September 2013
Short description: | p1@CALCOCO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CALCOCO2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372317, ENST00000416445, ENST00000448105, ENST00000508679, ENST00000509415, ENST00000509507, ENST00000510356, ENST00000511697, ENST00000513119_5end |
EntrezGene: | CALCOCO2 |
HGNC: | 29912 |
UniProt: | E7ETP5B4DP36E7ENK0D6RJE7E9PBE5D6REB0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.88e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.88e-25 | 42 |
defensive cell | 2.24e-21 | 48 |
phagocyte | 2.24e-21 | 48 |
myeloid leukocyte | 2.71e-20 | 72 |
myeloid lineage restricted progenitor cell | 2.25e-17 | 66 |
monopoietic cell | 5.21e-17 | 59 |
monocyte | 5.21e-17 | 59 |
monoblast | 5.21e-17 | 59 |
promonocyte | 5.21e-17 | 59 |
macrophage dendritic cell progenitor | 6.52e-17 | 61 |
granulocyte monocyte progenitor cell | 7.94e-16 | 67 |
myeloid cell | 1.00e-09 | 108 |
common myeloid progenitor | 1.00e-09 | 108 |
hematopoietic lineage restricted progenitor cell | 2.31e-07 | 120 |
leukocyte | 2.56e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.06e-17 | 114 |
hematopoietic system | 1.35e-15 | 98 |
blood island | 1.35e-15 | 98 |
bone marrow | 1.22e-13 | 76 |
hemolymphoid system | 4.34e-13 | 108 |
bone element | 3.05e-12 | 82 |
skeletal element | 5.22e-12 | 90 |
skeletal system | 2.75e-11 | 100 |
immune system | 7.87e-11 | 93 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.