FFCP PHASE1:Hg19::chr17:40541170..40541207,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C7|description=CAGE_peak_at_chr17:40541170..40541207,+|id=chr17:40541170..40541207,+|ontology_enrichment_celltype=CL:0000738!1.04e-42!140;CL:0002087!3.28e-37!119;CL:0002031!6.67e-37!124;CL:0000988!3.02e-32!182;CL:0000037!4.83e-31!172;CL:0000566!4.83e-31!172;CL:0002032!1.87e-29!165;CL:0000837!1.87e-29!165;CL:0002057!5.85e-24!42;CL:0000860!8.43e-22!45;CL:0000838!1.02e-20!52;CL:0000766!2.27e-20!76;CL:0000542!3.68e-20!53;CL:0000051!3.68e-20!53;CL:0000557!1.38e-16!71;CL:0000839!1.31e-15!70;CL:0002009!1.06e-14!65;CL:0002194!4.34e-14!63;CL:0000576!4.34e-14!63;CL:0000040!4.34e-14!63;CL:0000559!4.34e-14!63;CL:0000084!9.96e-13!25;CL:0000827!9.96e-13!25;CL:0000791!4.33e-12!18;CL:0000789!4.33e-12!18;CL:0002420!4.33e-12!18;CL:0002419!4.33e-12!18;CL:0000790!4.33e-12!18;CL:0000763!1.71e-11!112;CL:0000049!1.71e-11!112;CL:0000080!3.57e-11!6;CL:0002320!8.83e-11!365;CL:0000134!2.47e-10!358;CL:0000624!2.46e-08!6;CL:0000219!7.91e-08!390;CL:0000623!5.45e-07!3;CL:0000825!5.45e-07!3;CL:0000625!8.87e-07!11|ontology_enrichment_celltype_v019=CL:0000623;2.79e-21;3!CL:0000860;1.37e-09;33!CL:0002057;1.37e-09;33!CL:0000895;1.81e-08;1|ontology_enrichment_celltype_v019_2=CL:0000623,2.53e-21,3;CL:0000825,2.53e-21,3;CL:0000988,8.23e-12,177;CL:0000738,2.22e-11,136;CL:0002087,3.38e-09,115;CL:0002031,1.07e-08,120;CL:0000037,1.35e-08,168;CL:0000810,1.75e-08,1;CL:0000895,1.75e-08,1;CL:0002436,1.75e-08,1;CL:0002427,1.75e-08,1;CL:0002428,1.75e-08,1;CL:0002429,1.75e-08,1;CL:0002433,1.75e-08,1;CL:0002431,1.75e-08,1;CL:0002432,1.75e-08,1;CL:0000766,5.61e-08,72;CL:0002032,6.26e-08,161;CL:0000837,6.26e-08,161;CL:0000860,1.32e-07,42;CL:0002057,1.32e-07,42|ontology_enrichment_development_v019=CL:0002427;1.81e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.08e-25!102;UBERON:0003061!2.08e-25!102;UBERON:0002193!3.70e-23!112;UBERON:0002371!2.88e-17!80;UBERON:0001474!2.25e-15!86;UBERON:0002405!3.40e-13!115;UBERON:0004765!1.69e-12!101;UBERON:0001434!1.69e-12!101;UBERON:0002384!1.83e-10!375;UBERON:0003081!2.22e-07!216;UBERON:0000178!7.08e-07!15;UBERON:0000179!7.08e-07!15;UBERON:0000463!7.08e-07!15|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-11;15!UBERON:0000179;2.49e-11;15!UBERON:0000463;2.49e-11;15!UBERON:0002331;8.62e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.64e-11,15;UBERON:0000179,2.64e-11,15;UBERON:0000463,2.64e-11,15;UBERON:0002390,3.34e-11,98;UBERON:0003061,3.34e-11,98;UBERON:0002193,6.28e-10,108;UBERON:0002331,7.73e-07,10;UBERON:0000358,7.73e-07,10;UBERON:0000307,7.73e-07,10;UBERON:0000091,7.73e-07,10;UBERON:0000087,7.73e-07,10;UBERON:0007010,7.73e-07,10;UBERON:0007806,7.73e-07,10;UBERON:0008780,7.73e-07,10;UBERON:0005728,7.73e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.550975469195755,0.786728553697808,0,0.619264493264304,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0.309706370895104,6.90461741573161,5.89169625016932,16.553756092201,0.344745680736619,0,0,0,0,0.898893937780338,0.612167784741805,0.641858054152187,0.639337125799041,0.329851300186716,2.19410023383795,0.852449501065388,0,0.56738522469114,0.622822248995575,4.27122730936464,4.17186334736161,11.2938199246661,0,0.368277635987565,0.632924774881769,0,0.212604299965044,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0,0,0,0.889509253863555,0,0.400395987036012,0.574752439954483,0,0,0.569212969109448,0,0.382273228125229,0,1.12101712596307,0,0.983548850569165,0,1.85041349099558,0,0.651844533267181,0.946895611469467,0,0.891283655081389,0.883817722424512,0.443067789167242,0.812411591295047,1.0247305578054,0.260118695119756,0,0,0,2.07601188426885,1.33770414044857,1.04535523804977,0.113309342697566,2.29932296161153,1.37450978193052,1.51811815211702,0.318565414324097,0,0,0.451725357233318,0.127986611154418,1.24930726552346,0,0,0.403213486449465,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,0.720599767084807,0.75745460055828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36436912242313,1.07813787429759,1.41177339907723,0,0,1.54657762555539,0,0,0.749007023947182,0,1.24324654030811,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,1.07857100409308,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_at_chr17:40541170..40541207,+ | |||
|id=chr17:40541170..40541207,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.04e-42!140;CL:0002087!3.28e-37!119;CL:0002031!6.67e-37!124;CL:0000988!3.02e-32!182;CL:0000037!4.83e-31!172;CL:0000566!4.83e-31!172;CL:0002032!1.87e-29!165;CL:0000837!1.87e-29!165;CL:0002057!5.85e-24!42;CL:0000860!8.43e-22!45;CL:0000838!1.02e-20!52;CL:0000766!2.27e-20!76;CL:0000542!3.68e-20!53;CL:0000051!3.68e-20!53;CL:0000557!1.38e-16!71;CL:0000839!1.31e-15!70;CL:0002009!1.06e-14!65;CL:0002194!4.34e-14!63;CL:0000576!4.34e-14!63;CL:0000040!4.34e-14!63;CL:0000559!4.34e-14!63;CL:0000084!9.96e-13!25;CL:0000827!9.96e-13!25;CL:0000791!4.33e-12!18;CL:0000789!4.33e-12!18;CL:0002420!4.33e-12!18;CL:0002419!4.33e-12!18;CL:0000790!4.33e-12!18;CL:0000763!1.71e-11!112;CL:0000049!1.71e-11!112;CL:0000080!3.57e-11!6;CL:0002320!8.83e-11!365;CL:0000134!2.47e-10!358;CL:0000624!2.46e-08!6;CL:0000219!7.91e-08!390;CL:0000623!5.45e-07!3;CL:0000825!5.45e-07!3;CL:0000625!8.87e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000623;2.79e-21;3!CL:0000860;1.37e-09;33!CL:0002057;1.37e-09;33!CL:0000895;1.81e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,2.53e-21,3;CL:0000825,2.53e-21,3;CL:0000988,8.23e-12,177;CL:0000738,2.22e-11,136;CL:0002087,3.38e-09,115;CL:0002031,1.07e-08,120;CL:0000037,1.35e-08,168;CL:0000810,1.75e-08,1;CL:0000895,1.75e-08,1;CL:0002436,1.75e-08,1;CL:0002427,1.75e-08,1;CL:0002428,1.75e-08,1;CL:0002429,1.75e-08,1;CL:0002433,1.75e-08,1;CL:0002431,1.75e-08,1;CL:0002432,1.75e-08,1;CL:0000766,5.61e-08,72;CL:0002032,6.26e-08,161;CL:0000837,6.26e-08,161;CL:0000860,1.32e-07,42;CL:0002057,1.32e-07,42 | |||
|ontology_enrichment_development_v019=CL:0002427;1.81e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.08e-25!102;UBERON:0003061!2.08e-25!102;UBERON:0002193!3.70e-23!112;UBERON:0002371!2.88e-17!80;UBERON:0001474!2.25e-15!86;UBERON:0002405!3.40e-13!115;UBERON:0004765!1.69e-12!101;UBERON:0001434!1.69e-12!101;UBERON:0002384!1.83e-10!375;UBERON:0003081!2.22e-07!216;UBERON:0000178!7.08e-07!15;UBERON:0000179!7.08e-07!15;UBERON:0000463!7.08e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-11;15!UBERON:0000179;2.49e-11;15!UBERON:0000463;2.49e-11;15!UBERON:0002331;8.62e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.64e-11,15;UBERON:0000179,2.64e-11,15;UBERON:0000463,2.64e-11,15;UBERON:0002390,3.34e-11,98;UBERON:0003061,3.34e-11,98;UBERON:0002193,6.28e-10,108;UBERON:0002331,7.73e-07,10;UBERON:0000358,7.73e-07,10;UBERON:0000307,7.73e-07,10;UBERON:0000091,7.73e-07,10;UBERON:0000087,7.73e-07,10;UBERON:0007010,7.73e-07,10;UBERON:0007806,7.73e-07,10;UBERON:0008780,7.73e-07,10;UBERON:0005728,7.73e-07,10 | |||
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|short_description=p@chr17:40541170..40541207,+ | |||
}} |
Revision as of 13:43, 11 September 2013
Short description: | p@chr17:40541170..40541207, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:40541170..40541207, + |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 2.53e-21 | 3 |
pro-NK cell | 2.53e-21 | 3 |
hematopoietic cell | 8.23e-12 | 177 |
leukocyte | 2.22e-11 | 136 |
nongranular leukocyte | 3.38e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.07e-08 | 120 |
hematopoietic stem cell | 1.35e-08 | 168 |
CD4-positive, alpha-beta thymocyte | 1.75e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.75e-08 | 1 |
mature CD4 single-positive thymocyte | 1.75e-08 | 1 |
resting double-positive thymocyte | 1.75e-08 | 1 |
double-positive blast | 1.75e-08 | 1 |
CD69-positive double-positive thymocyte | 1.75e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.75e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.75e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.75e-08 | 1 |
myeloid leukocyte | 5.61e-08 | 72 |
hematopoietic oligopotent progenitor cell | 6.26e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.26e-08 | 161 |
classical monocyte | 1.32e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.32e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
blood | 2.64e-11 | 15 |
haemolymphatic fluid | 2.64e-11 | 15 |
organism substance | 2.64e-11 | 15 |
hematopoietic system | 3.34e-11 | 98 |
blood island | 3.34e-11 | 98 |
hemolymphoid system | 6.28e-10 | 108 |
umbilical cord | 7.73e-07 | 10 |
blastocyst | 7.73e-07 | 10 |
blastula | 7.73e-07 | 10 |
bilaminar disc | 7.73e-07 | 10 |
inner cell mass | 7.73e-07 | 10 |
cleaving embryo | 7.73e-07 | 10 |
connecting stalk | 7.73e-07 | 10 |
inner cell mass derived epiblast | 7.73e-07 | 10 |
extraembryonic mesoderm | 7.73e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.