FFCP PHASE1:Hg19::chr16:69140122..69140126,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3038|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4820|TSSclassifier=S|UniProt=O00219|association_with_transcript=-2bp_to_NM_138612_5end|description=CAGE_peak_1_at_HAS3_5end|id=chr16:69140122..69140126,+|ontology_enrichment_celltype=CL:0000066!2.59e-24!254;CL:0002076!1.53e-15!43;CL:0002321!1.79e-13!248;CL:0000220!8.87e-13!246;CL:0000223!5.77e-11!59;CL:0002251!1.84e-07!21;CL:0002368!2.37e-07!13|ontology_enrichment_celltype_v019=CL:0002076;3.03e-11;42!CL:1000507;1.13e-08;10!CL:1000494;1.13e-08;10!CL:0002159;2.48e-08;14!CL:0002368;3.44e-08;13!CL:0002251;4.12e-08;20|ontology_enrichment_celltype_v019_2=CL:0000066,4.73e-19,253;CL:0002076,8.50e-14,42;CL:0002321,1.76e-12,250;CL:0000223,1.11e-10,58;CL:1000507,8.96e-09,10;CL:1000494,8.96e-09,10;CL:0002159,3.31e-08,14;CL:0002251,3.85e-08,20;CL:0002368,3.86e-08,13;CL:0000359,5.72e-07,32|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!6.34e-11!106;DOID:0050687!5.02e-09!143;DOID:1749!7.22e-08!14|ontology_enrichment_disease_v019=DOID:1749;4.47e-10;14|ontology_enrichment_disease_v019_2=DOID:1749,5.17e-10,14|ontology_enrichment_uberon=UBERON:0004119!1.15e-11!169;UBERON:0000925!1.15e-11!169;UBERON:0006595!1.15e-11!169;UBERON:0001008!3.28e-10!45;UBERON:0000481!4.12e-10!347;UBERON:0000468!8.28e-10!659;UBERON:0006554!9.16e-10!44;UBERON:0000464!1.26e-09!104;UBERON:0000475!1.82e-09!365;UBERON:0005153!2.40e-09!37;UBERON:0001007!3.75e-09!155;UBERON:0001555!3.75e-09!155;UBERON:0007026!3.75e-09!155;UBERON:0001004!4.89e-09!72;UBERON:0005911!5.90e-09!82;UBERON:0000467!6.20e-09!625;UBERON:0004111!7.76e-09!241;UBERON:0003104!8.04e-09!238;UBERON:0009142!8.04e-09!238;UBERON:0000480!9.02e-09!626;UBERON:0000161!2.50e-08!35;UBERON:0005157!5.08e-08!51;UBERON:0000466!7.45e-08!126;UBERON:0002100!9.54e-08!216;UBERON:0000922!1.74e-07!612;UBERON:0000477!4.79e-07!286;UBERON:0003064!5.42e-07!37;UBERON:0003102!5.75e-07!95;UBERON:0005181!6.28e-07!35;UBERON:0000483!7.71e-07!309;UBERON:0005178!9.00e-07!34;UBERON:0002224!9.00e-07!34|ontology_enrichment_uberon_v019=UBERON:0004211;1.13e-08;10!UBERON:0009773;1.13e-08;10!UBERON:0001231;1.13e-08;10!UBERON:0004810;1.13e-08;10!UBERON:0006554;4.10e-07;30!UBERON:0001008;4.10e-07;30!UBERON:0000165;4.20e-07;28!UBERON:0000486;4.74e-07;12!UBERON:0004573;9.97e-07;33!UBERON:0004571;9.97e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.17e-12,160;UBERON:0000925,7.17e-12,160;UBERON:0006595,7.17e-12,160;UBERON:0003102,7.20e-10,99;UBERON:0000161,2.18e-09,36;UBERON:0001008,5.37e-09,48;UBERON:0001004,5.82e-09,74;UBERON:0004810,8.96e-09,10;UBERON:0006554,1.87e-08,47;UBERON:0001007,1.96e-08,145;UBERON:0001555,1.96e-08,145;UBERON:0007026,1.96e-08,145;UBERON:0005153,5.19e-08,37;UBERON:0005157,8.09e-08,47;UBERON:0002100,1.14e-07,199;UBERON:0000165,1.28e-07,29;UBERON:0000930,1.28e-07,29;UBERON:0004573,1.42e-07,33;UBERON:0004571,1.42e-07,33;UBERON:0004111,6.52e-07,240;UBERON:0005178,6.52e-07,34;UBERON:0002224,6.52e-07,34|phase1_expression=0.181678379270557,0,0,1.0007329835313,0,1.74467704820074,45.5939780702959,0,0,0.491467873003018,0.697801167972428,0,0,0,0,4.03395087871065,3.61616716814386,2.92124036154949,3.41552959153355,3.20114750999649,2.04000691244253,0,0.85870796139317,1.36874425072884,1.12988375635323,0,0,0,0,0,0,13.7913183671839,18.3735610454733,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,1.0843174571537,0,4.05570253090306,0,0.486634870302636,0,0.221729397462564,0,1.0478326039817,32.4222806580363,18.168437696437,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0.516833518338658,0,0.66944122552934,0.805658634218294,0,0.488124115096339,0.367663080345869,1.62028389576352,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,0,0,0,23.5490788156969,2.98183171017191,0.379891534993739,7.41491412554025,0,1.41867352879343,1.12135520028461,4.2699598291882,3.20667812942308,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0.309977343527296,0,2.47266929278557,0,0,0,0,0.554128230968366,1.75591048352335,14.4049264025539,5.55880817954408,0,1.97328599257748,0.640672166455702,0,0,0,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0,0,1.06502877754984,1.20902517873168,0.169560592310488,18.3597810505132,27.2746120590835,39.2922295682935,9.51394907810844,10.0722623924329,7.08783051504062,5.59769697083,5.80337957013945,0.72995471815166,4.69348596989448,7.07565032012174,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0.474541238222193,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.368965315629341,0.857839051492628,48.3998758652039,6.74410519545717,24.4285402960263,24.5359379670103,0,0,2.88662684050547,0.81151283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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3038 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4820 | |||
|TSSclassifier=S | |||
|UniProt=O00219 | |||
|association_with_transcript=-2bp_to_NM_138612_5end | |||
|description=CAGE_peak_1_at_HAS3_5end | |||
|id=chr16:69140122..69140126,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.59e-24!254;CL:0002076!1.53e-15!43;CL:0002321!1.79e-13!248;CL:0000220!8.87e-13!246;CL:0000223!5.77e-11!59;CL:0002251!1.84e-07!21;CL:0002368!2.37e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.03e-11;42!CL:1000507;1.13e-08;10!CL:1000494;1.13e-08;10!CL:0002159;2.48e-08;14!CL:0002368;3.44e-08;13!CL:0002251;4.12e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.73e-19,253;CL:0002076,8.50e-14,42;CL:0002321,1.76e-12,250;CL:0000223,1.11e-10,58;CL:1000507,8.96e-09,10;CL:1000494,8.96e-09,10;CL:0002159,3.31e-08,14;CL:0002251,3.85e-08,20;CL:0002368,3.86e-08,13;CL:0000359,5.72e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!6.34e-11!106;DOID:0050687!5.02e-09!143;DOID:1749!7.22e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.47e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.17e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.15e-11!169;UBERON:0000925!1.15e-11!169;UBERON:0006595!1.15e-11!169;UBERON:0001008!3.28e-10!45;UBERON:0000481!4.12e-10!347;UBERON:0000468!8.28e-10!659;UBERON:0006554!9.16e-10!44;UBERON:0000464!1.26e-09!104;UBERON:0000475!1.82e-09!365;UBERON:0005153!2.40e-09!37;UBERON:0001007!3.75e-09!155;UBERON:0001555!3.75e-09!155;UBERON:0007026!3.75e-09!155;UBERON:0001004!4.89e-09!72;UBERON:0005911!5.90e-09!82;UBERON:0000467!6.20e-09!625;UBERON:0004111!7.76e-09!241;UBERON:0003104!8.04e-09!238;UBERON:0009142!8.04e-09!238;UBERON:0000480!9.02e-09!626;UBERON:0000161!2.50e-08!35;UBERON:0005157!5.08e-08!51;UBERON:0000466!7.45e-08!126;UBERON:0002100!9.54e-08!216;UBERON:0000922!1.74e-07!612;UBERON:0000477!4.79e-07!286;UBERON:0003064!5.42e-07!37;UBERON:0003102!5.75e-07!95;UBERON:0005181!6.28e-07!35;UBERON:0000483!7.71e-07!309;UBERON:0005178!9.00e-07!34;UBERON:0002224!9.00e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.13e-08;10!UBERON:0009773;1.13e-08;10!UBERON:0001231;1.13e-08;10!UBERON:0004810;1.13e-08;10!UBERON:0006554;4.10e-07;30!UBERON:0001008;4.10e-07;30!UBERON:0000165;4.20e-07;28!UBERON:0000486;4.74e-07;12!UBERON:0004573;9.97e-07;33!UBERON:0004571;9.97e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.17e-12,160;UBERON:0000925,7.17e-12,160;UBERON:0006595,7.17e-12,160;UBERON:0003102,7.20e-10,99;UBERON:0000161,2.18e-09,36;UBERON:0001008,5.37e-09,48;UBERON:0001004,5.82e-09,74;UBERON:0004810,8.96e-09,10;UBERON:0006554,1.87e-08,47;UBERON:0001007,1.96e-08,145;UBERON:0001555,1.96e-08,145;UBERON:0007026,1.96e-08,145;UBERON:0005153,5.19e-08,37;UBERON:0005157,8.09e-08,47;UBERON:0002100,1.14e-07,199;UBERON:0000165,1.28e-07,29;UBERON:0000930,1.28e-07,29;UBERON:0004573,1.42e-07,33;UBERON:0004571,1.42e-07,33;UBERON:0004111,6.52e-07,240;UBERON:0005178,6.52e-07,34;UBERON:0002224,6.52e-07,34 | |||
|phase1_expression=0.181678379270557,0,0,1.0007329835313,0,1.74467704820074,45.5939780702959,0,0,0.491467873003018,0.697801167972428,0,0,0,0,4.03395087871065,3.61616716814386,2.92124036154949,3.41552959153355,3.20114750999649,2.04000691244253,0,0.85870796139317,1.36874425072884,1.12988375635323,0,0,0,0,0,0,13.7913183671839,18.3735610454733,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,1.0843174571537,0,4.05570253090306,0,0.486634870302636,0,0.221729397462564,0,1.0478326039817,32.4222806580363,18.168437696437,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0.516833518338658,0,0.66944122552934,0.805658634218294,0,0.488124115096339,0.367663080345869,1.62028389576352,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,0,0,0,23.5490788156969,2.98183171017191,0.379891534993739,7.41491412554025,0,1.41867352879343,1.12135520028461,4.2699598291882,3.20667812942308,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.368502951935304,0.309977343527296,0,2.47266929278557,0,0,0,0,0.554128230968366,1.75591048352335,14.4049264025539,5.55880817954408,0,1.97328599257748,0.640672166455702,0,0,0,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0,0,1.06502877754984,1.20902517873168,0.169560592310488,18.3597810505132,27.2746120590835,39.2922295682935,9.51394907810844,10.0722623924329,7.08783051504062,5.59769697083,5.80337957013945,0.72995471815166,4.69348596989448,7.07565032012174,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0.474541238222193,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.368965315629341,0.857839051492628,48.3998758652039,6.74410519545717,24.4285402960263,24.5359379670103,0,0,2.88662684050547,0.811512834825538,0.234817388471643,22.8098987462497,28.7051017797499,20.357194289102,0,0,0,0,0,18.7467667973554,4.03157107677263,23.6764412394785,1.25381931783988,12.7878932946143,15.3353071666084,0,0,0.621984346622316,0.864719720501769,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,5.72734816413214,7.84380112740265,1.09970290300263,0,0,0,0.239624855491583,0,1.42636905040718,0.144781306667579,0,0.179060963239896,0,0,0,0,1.01637849688985,0,3.86644406388848,0.167516265334349,0.637938751653163,0.749007023947182,0,0,0,0,0,0,0,0.157702415033935,0.702848489956279,0,2.27407504055985,0,0,0.368738337083406,0,0,0,0,0,0,1.5156378572313,0,0,0,1.38115775959256,2.52594084989766,0,0.511707249066704,1.60853921143608,1.48418066444991,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.966875596732978,76.1924587152483,6.16942625870505,1.83703117063371,0.364182336013434,2.22911505431021,2.25599806453706,2.69553679865452,7.84349769176855,16.0753147118587,4.11651352682215,0,0.170093705276516,0.431831832204279,1.54227252690289,1.89662506280697,3.01013864312912,12.7438136522519,11.6350641250021,18.1338551324964,0.219259876645935,0.522870902049801,0.256450125116389,0,0,1.03041011647722,0,0.247528499761764,40.7728531977282,55.2551209131043,0,0,0,0,0,0,0.145016693914229,0,0,5.2891172915513,3.65161127993702,7.01869918720213,1.31505115112215,0,1.5740617341532,0.6970372701606,9.85707456563484,2.12922412126809,0,2.59453906745488,21.4687330112987,0,0,0.571890581771475,0,0,4.77304871888905,11.7742296029885,0,0,0,4.24583211303964,6.34041284692033,15.1653044246033,0,5.84912375115083,0,0,0,1.13008116620243,2.75682671773062,17.2494133562717,9.64591947558278,0,0,0.202910376962704,1.8589409885985,0.281695602532241,0,0.392996164052485,0.7133421029625,0,8.86652068250189,0.658589785919804,0.379473173765715,0,7.02421422896238,24.1308819192883,17.4225575778116,0.564862804660675,38.3149781677395,38.7484394035539,30.5966805940306,12.1753402109689,0,0,0,0,0,0,0,0,0.213648142254946,0.962479855263359,1.71528151186722,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0.846458889008016,0,0,1.27753871307098,0,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0,15.9116242211591,0.47748896947538,0,0.307160702099232,0,0,12.1326488474967,0,0.422250816255987,0.796991953004279,0,0.251932747854276,1.43176155503017,0.123084805461069,1.55519793830904,0.539210106883961,1.43216939740487,0,3.64980600856654,0,0,0,0,1.99613798001194,0,0.174919999992391,0.724999575434793,37.0966641410729,0.762760950878299,0.236387681767936,0.689486746482929,0,0.173624994933292,1.77148277162768,0.241192877250816,0,0,0,0,0.10893846351899,132.452557064673,1.15425387755696,4.10191401049204,0,0.538545866458633,0.108647371922008,2.23300811812344,0.549585560411174,0.533034776018635,0,0,0.166211681900156,0,0,0,0,0,29.7507270984518,3.59112177950125,1.83758992864123,0.432777279484182,0,0.530745387020035,0.6110301449336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| |||
|short_description=p1@HAS3 | |||
}} |
Revision as of 11:18, 11 September 2013
Short description: | p1@HAS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HAS3_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_NM_138612_5end |
EntrezGene: | HAS3 |
HGNC: | 4820 |
UniProt: | O00219 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.73e-19 | 253 |
endo-epithelial cell | 8.50e-14 | 42 |
embryonic cell | 1.76e-12 | 250 |
endodermal cell | 1.11e-10 | 58 |
kidney tubule cell | 8.96e-09 | 10 |
nephron tubule epithelial cell | 8.96e-09 | 10 |
general ecto-epithelial cell | 3.31e-08 | 14 |
epithelial cell of alimentary canal | 3.85e-08 | 20 |
respiratory epithelial cell | 3.86e-08 | 13 |
vascular associated smooth muscle cell | 5.72e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.17e-12 | 160 |
endoderm | 7.17e-12 | 160 |
presumptive endoderm | 7.17e-12 | 160 |
surface structure | 7.20e-10 | 99 |
orifice | 2.18e-09 | 36 |
renal system | 5.37e-09 | 48 |
respiratory system | 5.82e-09 | 74 |
nephron tubule epithelium | 8.96e-09 | 10 |
urinary system structure | 1.87e-08 | 47 |
digestive system | 1.96e-08 | 145 |
digestive tract | 1.96e-08 | 145 |
primitive gut | 1.96e-08 | 145 |
epithelial bud | 5.19e-08 | 37 |
epithelial fold | 8.09e-08 | 47 |
trunk | 1.14e-07 | 199 |
mouth | 1.28e-07 | 29 |
stomodeum | 1.28e-07 | 29 |
systemic artery | 1.42e-07 | 33 |
systemic arterial system | 1.42e-07 | 33 |
anatomical conduit | 6.52e-07 | 240 |
thoracic cavity element | 6.52e-07 | 34 |
thoracic cavity | 6.52e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.17e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.