FFCP PHASE1:Hg19::chr16:56666424..56666452,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4499|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14296|TSSclassifier=S|UniProt=Q8N339|association_with_transcript=-81bp_to_ENST00000379818,NM_176870,uc002ejn.2_5end|coexpression_cluster_id=C3574|description=CAGE_peak_6_at_MT1M_5end|id=chr16:56666424..56666452,+|ontology_enrichment_celltype=CL:0000136!3.98e-09!15|ontology_enrichment_celltype_v019=CL:0000136;5.22e-14;13|ontology_enrichment_celltype_v019_2=CL:0000136,3.83e-14,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.15e-38!115;UBERON:0003075!2.50e-22!86;UBERON:0007284!2.50e-22!86;UBERON:0001049!5.11e-22!57;UBERON:0005068!5.11e-22!57;UBERON:0006241!5.11e-22!57;UBERON:0007135!5.11e-22!57;UBERON:0002346!2.41e-20!90;UBERON:0002616!6.12e-18!59;UBERON:0000475!2.74e-16!365;UBERON:0004111!1.29e-15!241;UBERON:0003080!1.61e-15!42;UBERON:0000153!4.49e-15!129;UBERON:0007811!4.49e-15!129;UBERON:0000033!4.97e-15!123;UBERON:0000477!5.32e-15!286;UBERON:0000119!8.05e-15!312;UBERON:0002780!1.10e-14!41;UBERON:0001890!1.10e-14!41;UBERON:0006240!1.10e-14!41;UBERON:0000483!1.22e-14!309;UBERON:0002020!2.10e-14!34;UBERON:0003528!2.10e-14!34;UBERON:0005743!8.91e-14!86;UBERON:0001893!1.03e-13!34;UBERON:0003056!1.06e-13!61;UBERON:0000025!1.20e-13!194;UBERON:0000955!1.49e-13!69;UBERON:0006238!1.49e-13!69;UBERON:0002791!1.97e-13!33;UBERON:0000073!4.40e-13!94;UBERON:0001016!4.40e-13!94;UBERON:0001017!5.32e-13!82;UBERON:0001869!9.00e-13!32;UBERON:0000481!7.02e-12!347;UBERON:0000064!1.91e-11!219;UBERON:0004121!1.43e-10!169;UBERON:0000924!8.10e-10!173;UBERON:0006601!8.10e-10!173;UBERON:0002619!1.15e-09!22;UBERON:0000467!4.89e-09!625;UBERON:0000468!5.61e-09!659;UBERON:0000480!6.25e-09!626;UBERON:0000956!1.44e-08!25;UBERON:0000203!1.44e-08!25;UBERON:0001950!2.05e-08!20;UBERON:0002308!4.72e-08!9;UBERON:0000125!4.72e-08!9;UBERON:0002420!6.14e-08!9;UBERON:0007245!6.14e-08!9;UBERON:0010009!6.14e-08!9;UBERON:0010011!6.14e-08!9;UBERON:0000454!6.14e-08!9;UBERON:0003076!8.56e-08!15;UBERON:0003057!8.56e-08!15;UBERON:0000479!1.28e-07!787;UBERON:0002298!3.07e-07!8|ontology_enrichment_uberon_v019=UBERON:0000125;1.06e-11;9!UBERON:0002308;1.06e-11;9!UBERON:0002420;3.37e-11;9!UBERON:0007245;3.37e-11;9!UBERON:0010009;3.37e-11;9!UBERON:0010011;3.37e-11;9!UBERON:0000454;3.37e-11;9!UBERON:0009663;6.71e-08;7!UBERON:0001013;1.47e-07;14!UBERON:0005383;2.22e-07;3!UBERON:0005382;2.22e-07;3!UBERON:0007023;3.62e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.21e-21,114;UBERON:0003075,5.44e-13,82;UBERON:0007284,5.44e-13,82;UBERON:0001049,3.71e-12,56;UBERON:0005068,3.71e-12,56;UBERON:0006241,3.71e-12,56;UBERON:0007135,3.71e-12,56;UBERON:0002346,4.60e-12,86;UBERON:0000125,6.01e-12,9;UBERON:0002308,6.01e-12,9;UBERON:0002420,1.00e-11,9;UBERON:0007245,1.00e-11,9;UBERON:0010009,1.00e-11,9;UBERON:0010011,1.00e-11,9;UBERON:0000454,1.00e-11,9;UBERON:0000073,2.14e-10,53;UBERON:0002616,2.14e-10,53;UBERON:0010314,4.43e-09,132;UBERON:0010371,8.15e-09,104;UBERON:0002780,1.19e-08,41;UBERON:0001890,1.19e-08,41;UBERON:0003080,1.19e-08,41;UBERON:0006240,1.19e-08,41;UBERON:0009663,3.22e-08,7;UBERON:0003528,4.45e-08,34;UBERON:0002020,4.45e-08,34;UBERON:0000025,1.17e-07,192;UBERON:0005383,1.17e-07,3;UBERON:0005382,1.17e-07,3;UBERON:0001013,1.33e-07,14;UBERON:0003056,1.67e-07,61;UBERON:0000955,5.70e-07,68;UBERON:0006238,5.70e-07,68;UBERON:0001017,9.80e-07,81|phase1_expression=0.363356758541113,1.07050261945492,0.704772020479856,1.0007329835313,2.68176656656373,2.61701557230111,0,0,5.74608382039645,0.245733936501509,0,0,0,0,0,0,0,0,0,0.246242116153576,0.816002764977012,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,0.579386075843295,0,0.486634870302636,0,0,0,0.261958150995425,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,1.38856200643038,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0.81014194788176,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13842229158782,0.117434498643765,0,0.280901613404497,0.61246251376468,0.245668634623536,2.06651562351531,1.18800285728205,0.494533858557114,0.910161361938026,0.718618141816238,0,0,0,1.31693286264251,0.612975591598039,0.150238058906597,0.113432183160021,0,0,0,0,0.92747276314595,0,0.37223371266318,0,0.876933046450788,0,0.184099797284599,0.323292113637624,0,0,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,1.77236972004421,0,0,0,0.109750285408626,0,0,0,0,4.15973914111831,0,0.115930404975077,0.117408694235822,0.577465791044295,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0.16798212819886,0.283550194484773,0,0,0,0,0,0,1.1529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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4499 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14296 | |||
|TSSclassifier=S | |||
|UniProt=Q8N339 | |||
|association_with_transcript=-81bp_to_ENST00000379818,NM_176870,uc002ejn.2_5end | |||
|coexpression_cluster_id=C3574 | |||
|description=CAGE_peak_6_at_MT1M_5end | |||
|id=chr16:56666424..56666452,+ | |||
|ontology_enrichment_celltype=CL:0000136!3.98e-09!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.22e-14;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.83e-14,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.15e-38!115;UBERON:0003075!2.50e-22!86;UBERON:0007284!2.50e-22!86;UBERON:0001049!5.11e-22!57;UBERON:0005068!5.11e-22!57;UBERON:0006241!5.11e-22!57;UBERON:0007135!5.11e-22!57;UBERON:0002346!2.41e-20!90;UBERON:0002616!6.12e-18!59;UBERON:0000475!2.74e-16!365;UBERON:0004111!1.29e-15!241;UBERON:0003080!1.61e-15!42;UBERON:0000153!4.49e-15!129;UBERON:0007811!4.49e-15!129;UBERON:0000033!4.97e-15!123;UBERON:0000477!5.32e-15!286;UBERON:0000119!8.05e-15!312;UBERON:0002780!1.10e-14!41;UBERON:0001890!1.10e-14!41;UBERON:0006240!1.10e-14!41;UBERON:0000483!1.22e-14!309;UBERON:0002020!2.10e-14!34;UBERON:0003528!2.10e-14!34;UBERON:0005743!8.91e-14!86;UBERON:0001893!1.03e-13!34;UBERON:0003056!1.06e-13!61;UBERON:0000025!1.20e-13!194;UBERON:0000955!1.49e-13!69;UBERON:0006238!1.49e-13!69;UBERON:0002791!1.97e-13!33;UBERON:0000073!4.40e-13!94;UBERON:0001016!4.40e-13!94;UBERON:0001017!5.32e-13!82;UBERON:0001869!9.00e-13!32;UBERON:0000481!7.02e-12!347;UBERON:0000064!1.91e-11!219;UBERON:0004121!1.43e-10!169;UBERON:0000924!8.10e-10!173;UBERON:0006601!8.10e-10!173;UBERON:0002619!1.15e-09!22;UBERON:0000467!4.89e-09!625;UBERON:0000468!5.61e-09!659;UBERON:0000480!6.25e-09!626;UBERON:0000956!1.44e-08!25;UBERON:0000203!1.44e-08!25;UBERON:0001950!2.05e-08!20;UBERON:0002308!4.72e-08!9;UBERON:0000125!4.72e-08!9;UBERON:0002420!6.14e-08!9;UBERON:0007245!6.14e-08!9;UBERON:0010009!6.14e-08!9;UBERON:0010011!6.14e-08!9;UBERON:0000454!6.14e-08!9;UBERON:0003076!8.56e-08!15;UBERON:0003057!8.56e-08!15;UBERON:0000479!1.28e-07!787;UBERON:0002298!3.07e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000125;1.06e-11;9!UBERON:0002308;1.06e-11;9!UBERON:0002420;3.37e-11;9!UBERON:0007245;3.37e-11;9!UBERON:0010009;3.37e-11;9!UBERON:0010011;3.37e-11;9!UBERON:0000454;3.37e-11;9!UBERON:0009663;6.71e-08;7!UBERON:0001013;1.47e-07;14!UBERON:0005383;2.22e-07;3!UBERON:0005382;2.22e-07;3!UBERON:0007023;3.62e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.21e-21,114;UBERON:0003075,5.44e-13,82;UBERON:0007284,5.44e-13,82;UBERON:0001049,3.71e-12,56;UBERON:0005068,3.71e-12,56;UBERON:0006241,3.71e-12,56;UBERON:0007135,3.71e-12,56;UBERON:0002346,4.60e-12,86;UBERON:0000125,6.01e-12,9;UBERON:0002308,6.01e-12,9;UBERON:0002420,1.00e-11,9;UBERON:0007245,1.00e-11,9;UBERON:0010009,1.00e-11,9;UBERON:0010011,1.00e-11,9;UBERON:0000454,1.00e-11,9;UBERON:0000073,2.14e-10,53;UBERON:0002616,2.14e-10,53;UBERON:0010314,4.43e-09,132;UBERON:0010371,8.15e-09,104;UBERON:0002780,1.19e-08,41;UBERON:0001890,1.19e-08,41;UBERON:0003080,1.19e-08,41;UBERON:0006240,1.19e-08,41;UBERON:0009663,3.22e-08,7;UBERON:0003528,4.45e-08,34;UBERON:0002020,4.45e-08,34;UBERON:0000025,1.17e-07,192;UBERON:0005383,1.17e-07,3;UBERON:0005382,1.17e-07,3;UBERON:0001013,1.33e-07,14;UBERON:0003056,1.67e-07,61;UBERON:0000955,5.70e-07,68;UBERON:0006238,5.70e-07,68;UBERON:0001017,9.80e-07,81 | |||
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| |||
|short_description=p6@MT1M | |||
}} |
Revision as of 10:49, 11 September 2013
Short description: | p6@MT1M |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_MT1M_5end |
Coexpression cluster: | C3574_Mesenchymal_mature_breast_skeletal_medulla_heart_hippocampus |
Association with transcript: | -81bp_to_ENST00000379818, NM_176870, uc002ejn.2_5end |
EntrezGene: | MT1M |
HGNC: | 14296 |
UniProt: | Q8N339 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.83e-14 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.21e-21 | 114 |
neural plate | 5.44e-13 | 82 |
presumptive neural plate | 5.44e-13 | 82 |
neural tube | 3.71e-12 | 56 |
neural rod | 3.71e-12 | 56 |
future spinal cord | 3.71e-12 | 56 |
neural keel | 3.71e-12 | 56 |
neurectoderm | 4.60e-12 | 86 |
neural nucleus | 6.01e-12 | 9 |
nucleus of brain | 6.01e-12 | 9 |
basal ganglion | 1.00e-11 | 9 |
nuclear complex of neuraxis | 1.00e-11 | 9 |
aggregate regional part of brain | 1.00e-11 | 9 |
collection of basal ganglia | 1.00e-11 | 9 |
cerebral subcortex | 1.00e-11 | 9 |
regional part of nervous system | 2.14e-10 | 53 |
regional part of brain | 2.14e-10 | 53 |
structure with developmental contribution from neural crest | 4.43e-09 | 132 |
ecto-epithelium | 8.15e-09 | 104 |
regional part of forebrain | 1.19e-08 | 41 |
forebrain | 1.19e-08 | 41 |
anterior neural tube | 1.19e-08 | 41 |
future forebrain | 1.19e-08 | 41 |
telencephalic nucleus | 3.22e-08 | 7 |
brain grey matter | 4.45e-08 | 34 |
gray matter | 4.45e-08 | 34 |
tube | 1.17e-07 | 192 |
caudate-putamen | 1.17e-07 | 3 |
dorsal striatum | 1.17e-07 | 3 |
adipose tissue | 1.33e-07 | 14 |
pre-chordal neural plate | 1.67e-07 | 61 |
brain | 5.70e-07 | 68 |
future brain | 5.70e-07 | 68 |
central nervous system | 9.80e-07 | 81 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.