FFCP PHASE1:Hg19::chr15:66994523..66994541,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4091|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6772|TSSclassifier=S|UniProt=O43541|association_with_transcript=-128bp_to_ENST00000288840_5end|coexpression_cluster_id=C95|description=CAGE_peak_5_at_SMAD6_5end|id=chr15:66994523..66994541,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005062;3.15e-08;4!UBERON:0007284;3.15e-08;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.03e-25!115;UBERON:0003075!6.12e-20!86;UBERON:0007284!6.12e-20!86;UBERON:0002346!1.18e-18!90;UBERON:0005743!7.67e-17!86;UBERON:0001049!9.53e-17!57;UBERON:0005068!9.53e-17!57;UBERON:0006241!9.53e-17!57;UBERON:0007135!9.53e-17!57;UBERON:0000025!1.32e-15!194;UBERON:0000955!4.39e-15!69;UBERON:0006238!4.39e-15!69;UBERON:0001017!1.56e-14!82;UBERON:0002616!5.10e-14!59;UBERON:0000073!9.69e-14!94;UBERON:0001016!9.69e-14!94;UBERON:0000477!1.16e-13!286;UBERON:0003056!2.69e-12!61;UBERON:0004111!3.56e-12!241;UBERON:0000153!2.26e-11!129;UBERON:0007811!2.26e-11!129;UBERON:0003080!2.82e-11!42;UBERON:0002020!5.07e-11!34;UBERON:0003528!5.07e-11!34;UBERON:0000483!9.78e-11!309;UBERON:0002780!1.31e-10!41;UBERON:0001890!1.31e-10!41;UBERON:0006240!1.31e-10!41;UBERON:0002791!2.68e-10!33;UBERON:0000119!2.86e-10!312;UBERON:0000033!3.82e-10!123;UBERON:0001893!1.00e-09!34;UBERON:0001869!9.47e-09!32;UBERON:0000064!1.09e-08!219;UBERON:0000062!5.97e-08!511;UBERON:0004121!6.36e-08!169;UBERON:0002619!9.92e-08!22;UBERON:0000924!1.50e-07!173;UBERON:0006601!1.50e-07!173;UBERON:0000481!3.11e-07!347;UBERON:0000956!4.49e-07!25;UBERON:0000203!4.49e-07!25;UBERON:0003076!5.87e-07!15;UBERON:0003057!5.87e-07!15;UBERON:0002298!7.12e-07!8|ontology_enrichment_uberon_v019=UBERON:0003978;7.76e-11;3!UBERON:0000946;7.76e-11;3!UBERON:0007100;2.80e-09;25!UBERON:0000948;1.47e-08;22!UBERON:0002081;2.31e-08;2!UBERON:0002133;5.95e-08;2!UBERON:0001954;1.94e-07;2!UBERON:0003022;1.94e-07;2!UBERON:0002421;1.94e-07;2!UBERON:0002600;1.94e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0003978,3.65e-11,3;UBERON:0009751,3.65e-11,3;UBERON:0000946,3.65e-11,3;UBERON:0002523,3.65e-11,3;UBERON:0005983,3.65e-11,3;UBERON:0002165,3.65e-11,3;UBERON:0002062,3.65e-11,3;UBERON:0007280,3.65e-11,3;UBERON:0007100,2.18e-08,27;UBERON:0002081,2.69e-08,2;UBERON:0010227,2.69e-08,2;UBERON:0002133,3.20e-08,2;UBERON:0000025,5.12e-08,192;UBERON:0007023,8.27e-08,114;UBERON:0000948,1.19e-07,24;UBERON:0005498,1.19e-07,24;UBERON:0004140,1.19e-07,24;UBERON:0009881,1.19e-07,24;UBERON:0004141,1.19e-07,24;UBERON:0003084,1.19e-07,24;UBERON:0007005,1.19e-07,24;UBERON:0004139,1.19e-07,24;UBERON:0004291,1.19e-07,24;UBERON:0001954,1.50e-07,2;UBERON:0003022,1.50e-07,2;UBERON:0002421,1.50e-07,2;UBERON:0002600,1.50e-07,2;UBERON:0010314,1.74e-07,132|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.15076305659177,1.0843174571537,1.50401373190767,0.724232594804119,0,0,0.378139268656271,0,0.263504357079378,1.96468613246569,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0.39752481473341,0,0.694281003215189,1.69592382577203,1.25849830862972,0.550236083880135,1.04497483268405,0.258416759169329,0,0,0,0,0,0,2.43042584364528,0.357198913136319,0.44905874525234,1.12611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0.286836620748814,0,0,1.06748995729705,0.24666754841716,0.311211035399766,0.269421344139376,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.907457465280168,0,0,0,0.300091096084402,0,0,0.18611685633159,0.168776332241266,0,0.252433774244115,0.184099797284599,0.161646056818812,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0,0.116193942869518,0.310983165046111,0,0,0,0,1.38134921352481,0,0.721879481669586,0.236613600079688,0,0,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0,0,1.4763109092493,0,0.4115740113314,1.47008711385542,0,0,2.36315962672562,0,0,0.343135620597051,0,0,0,0,0,0,2.88662684050547,0.463721619900307,0.117408694235822,0.577465791044295,0.462985512576611,0.380508304469197,0.790204397959275,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0,0.672510863961164,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0.2342828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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6772 | |||
|TSSclassifier=S | |||
|UniProt=O43541 | |||
|association_with_transcript=-128bp_to_ENST00000288840_5end | |||
|coexpression_cluster_id=C95 | |||
|description=CAGE_peak_5_at_SMAD6_5end | |||
|id=chr15:66994523..66994541,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;3.15e-08;4!UBERON:0007284;3.15e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.03e-25!115;UBERON:0003075!6.12e-20!86;UBERON:0007284!6.12e-20!86;UBERON:0002346!1.18e-18!90;UBERON:0005743!7.67e-17!86;UBERON:0001049!9.53e-17!57;UBERON:0005068!9.53e-17!57;UBERON:0006241!9.53e-17!57;UBERON:0007135!9.53e-17!57;UBERON:0000025!1.32e-15!194;UBERON:0000955!4.39e-15!69;UBERON:0006238!4.39e-15!69;UBERON:0001017!1.56e-14!82;UBERON:0002616!5.10e-14!59;UBERON:0000073!9.69e-14!94;UBERON:0001016!9.69e-14!94;UBERON:0000477!1.16e-13!286;UBERON:0003056!2.69e-12!61;UBERON:0004111!3.56e-12!241;UBERON:0000153!2.26e-11!129;UBERON:0007811!2.26e-11!129;UBERON:0003080!2.82e-11!42;UBERON:0002020!5.07e-11!34;UBERON:0003528!5.07e-11!34;UBERON:0000483!9.78e-11!309;UBERON:0002780!1.31e-10!41;UBERON:0001890!1.31e-10!41;UBERON:0006240!1.31e-10!41;UBERON:0002791!2.68e-10!33;UBERON:0000119!2.86e-10!312;UBERON:0000033!3.82e-10!123;UBERON:0001893!1.00e-09!34;UBERON:0001869!9.47e-09!32;UBERON:0000064!1.09e-08!219;UBERON:0000062!5.97e-08!511;UBERON:0004121!6.36e-08!169;UBERON:0002619!9.92e-08!22;UBERON:0000924!1.50e-07!173;UBERON:0006601!1.50e-07!173;UBERON:0000481!3.11e-07!347;UBERON:0000956!4.49e-07!25;UBERON:0000203!4.49e-07!25;UBERON:0003076!5.87e-07!15;UBERON:0003057!5.87e-07!15;UBERON:0002298!7.12e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;7.76e-11;3!UBERON:0000946;7.76e-11;3!UBERON:0007100;2.80e-09;25!UBERON:0000948;1.47e-08;22!UBERON:0002081;2.31e-08;2!UBERON:0002133;5.95e-08;2!UBERON:0001954;1.94e-07;2!UBERON:0003022;1.94e-07;2!UBERON:0002421;1.94e-07;2!UBERON:0002600;1.94e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,3.65e-11,3;UBERON:0009751,3.65e-11,3;UBERON:0000946,3.65e-11,3;UBERON:0002523,3.65e-11,3;UBERON:0005983,3.65e-11,3;UBERON:0002165,3.65e-11,3;UBERON:0002062,3.65e-11,3;UBERON:0007280,3.65e-11,3;UBERON:0007100,2.18e-08,27;UBERON:0002081,2.69e-08,2;UBERON:0010227,2.69e-08,2;UBERON:0002133,3.20e-08,2;UBERON:0000025,5.12e-08,192;UBERON:0007023,8.27e-08,114;UBERON:0000948,1.19e-07,24;UBERON:0005498,1.19e-07,24;UBERON:0004140,1.19e-07,24;UBERON:0009881,1.19e-07,24;UBERON:0004141,1.19e-07,24;UBERON:0003084,1.19e-07,24;UBERON:0007005,1.19e-07,24;UBERON:0004139,1.19e-07,24;UBERON:0004291,1.19e-07,24;UBERON:0001954,1.50e-07,2;UBERON:0003022,1.50e-07,2;UBERON:0002421,1.50e-07,2;UBERON:0002600,1.50e-07,2;UBERON:0010314,1.74e-07,132 | |||
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| |||
|short_description=p5@SMAD6 | |||
}} |
Revision as of 07:56, 11 September 2013
Short description: | p5@SMAD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SMAD6_5end |
Coexpression cluster: | C95_lung_aorta_trachea_penis_Alveolar_throat_endometrioid |
Association with transcript: | -128bp_to_ENST00000288840_5end |
EntrezGene: | SMAD6 |
HGNC: | 6772 |
UniProt: | O43541 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
valve | 3.65e-11 | 3 |
cardiac mesenchyme | 3.65e-11 | 3 |
cardial valve | 3.65e-11 | 3 |
tunica intima | 3.65e-11 | 3 |
heart layer | 3.65e-11 | 3 |
endocardium | 3.65e-11 | 3 |
endocardial cushion | 3.65e-11 | 3 |
presumptive endocardium | 3.65e-11 | 3 |
primary circulatory organ | 2.18e-08 | 27 |
cardiac atrium | 2.69e-08 | 2 |
future cardiac atrium | 2.69e-08 | 2 |
atrioventricular valve | 3.20e-08 | 2 |
tube | 5.12e-08 | 192 |
adult organism | 8.27e-08 | 114 |
heart | 1.19e-07 | 24 |
primitive heart tube | 1.19e-07 | 24 |
primary heart field | 1.19e-07 | 24 |
anterior lateral plate mesoderm | 1.19e-07 | 24 |
heart tube | 1.19e-07 | 24 |
heart primordium | 1.19e-07 | 24 |
cardiac mesoderm | 1.19e-07 | 24 |
cardiogenic plate | 1.19e-07 | 24 |
heart rudiment | 1.19e-07 | 24 |
Ammon's horn | 1.50e-07 | 2 |
lobe parts of cerebral cortex | 1.50e-07 | 2 |
hippocampal formation | 1.50e-07 | 2 |
limbic lobe | 1.50e-07 | 2 |
structure with developmental contribution from neural crest | 1.74e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.