FFCP PHASE1:Hg19::chr15:51984388..51984400,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29106|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=13707|TSSclassifier=W|UniProt=Q8WXD2|association_with_transcript=17bp_to_BC009511_5end|coexpression_cluster_id=C94|description=CAGE_peak_6_at_SCG3_5end|id=chr15:51984388..51984400,+|ontology_enrichment_celltype=CL:0000540!2.13e-11!6;CL:0000031!2.13e-11!6;CL:0000404!2.13e-11!6;CL:0000047!1.92e-08!8;CL:0002322!6.33e-08!5|ontology_enrichment_celltype_v019=CL:0000123;6.93e-09;2!CL:0000242;6.93e-09;2|ontology_enrichment_celltype_v019_2=CL:0000242,6.42e-09,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:5409!7.84e-07!4|ontology_enrichment_disease_v019=DOID:5409;2.96e-16;4!DOID:1325;1.06e-09;7!DOID:3904;1.06e-09;7!DOID:154;6.93e-09;2!DOID:4236;6.93e-09;2!DOID:3905;9.68e-08;9|ontology_enrichment_disease_v019_2=DOID:5409,3.59e-16,4;DOID:1325,1.18e-09,7;DOID:3904,1.18e-09,7;DOID:154,5.49e-09,2;DOID:4236,5.49e-09,2;DOID:3905,1.05e-07,9|ontology_enrichment_uberon=UBERON:0001017!3.54e-70!82;UBERON:0001049!5.17e-70!57;UBERON:0005068!5.17e-70!57;UBERON:0006241!5.17e-70!57;UBERON:0007135!5.17e-70!57;UBERON:0000073!5.35e-67!94;UBERON:0001016!5.35e-67!94;UBERON:0005743!2.30e-66!86;UBERON:0002780!1.05e-60!41;UBERON:0001890!1.05e-60!41;UBERON:0006240!1.05e-60!41;UBERON:0002616!2.52e-60!59;UBERON:0003080!4.54e-59!42;UBERON:0000955!5.09e-58!69;UBERON:0006238!5.09e-58!69;UBERON:0002020!1.03e-48!34;UBERON:0003528!1.03e-48!34;UBERON:0001893!2.00e-48!34;UBERON:0003075!1.00e-47!86;UBERON:0007284!1.00e-47!86;UBERON:0002791!3.09e-46!33;UBERON:0002346!4.30e-45!90;UBERON:0001869!1.80e-44!32;UBERON:0003056!1.06e-40!61;UBERON:0002619!8.32e-38!22;UBERON:0004121!6.96e-35!169;UBERON:0000924!9.15e-34!173;UBERON:0006601!9.15e-34!173;UBERON:0007023!2.16e-33!115;UBERON:0001950!7.17e-33!20;UBERON:0000956!8.09e-33!25;UBERON:0000203!8.09e-33!25;UBERON:0000033!1.29e-29!123;UBERON:0000153!1.02e-27!129;UBERON:0007811!1.02e-27!129;UBERON:0002420!9.11e-18!9;UBERON:0007245!9.11e-18!9;UBERON:0010009!9.11e-18!9;UBERON:0010011!9.11e-18!9;UBERON:0000454!9.11e-18!9;UBERON:0002308!1.93e-17!9;UBERON:0000125!1.93e-17!9;UBERON:0000200!3.69e-16!6;UBERON:0000025!7.73e-16!194;UBERON:0000349!7.91e-14!5;UBERON:0001872!1.62e-13!5;UBERON:0001894!1.66e-13!7;UBERON:0006222!1.66e-13!7;UBERON:0009663!5.14e-13!7;UBERON:0003076!2.36e-12!15;UBERON:0003057!2.36e-12!15;UBERON:0001871!8.03e-12!7;UBERON:0004111!1.34e-10!241;UBERON:0002298!1.94e-10!8;UBERON:0004733!1.59e-09!12;UBERON:0002028!1.59e-09!12;UBERON:0007277!1.59e-09!12;UBERON:0002771!3.82e-09!3;UBERON:0004732!1.03e-08!13;UBERON:0002021!1.42e-08!5;UBERON:0000483!2.72e-08!309;UBERON:0006331!3.17e-08!3;UBERON:0000119!4.18e-08!312;UBERON:0000988!4.19e-08!3;UBERON:0000477!6.29e-08!286;UBERON:0000064!1.45e-07!219;UBERON:0002680!4.04e-07!9;UBERON:0001895!4.04e-07!9;UBERON:0010092!4.04e-07!9;UBERON:0000475!7.85e-07!365;UBERON:0001954!8.36e-07!2;UBERON:0003022!8.36e-07!2;UBERON:0002421!8.36e-07!2;UBERON:0002600!8.36e-07!2;UBERON:0003296!9.56e-07!4;UBERON:0010133!9.56e-07!4|ontology_enrichment_uberon_v019=UBERON:0003112;1.93e-16;1!UBERON:0011158;1.93e-16;1!UBERON:0003128;1.93e-16;1!UBERON:0001703;1.93e-16;1!UBERON:0002241;1.93e-16;1!UBERON:0002771;3.71e-09;2!UBERON:0000007;4.52e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0003112,1.41e-16,1;UBERON:0011158,1.41e-16,1;UBERON:0003128,1.41e-16,1;UBERON:0001703,1.41e-16,1;UBERON:0002241,1.41e-16,1;UBERON:0004761,1.41e-16,1;UBERON:0009617,1.41e-16,1;UBERON:0002771,3.71e-09,2;UBERON:0000007,4.34e-09,2;UBERON:0005253,5.94e-09,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20598527610407,0,0,0,0,0,0,0,0,0.291604613383254,1.90987494426621,0,0.60298219312704,0,0.552896299656123,0.886642856860642,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451191321234361,0.392125068635479,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=29106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=13707 | |||
|TSSclassifier=W | |||
|UniProt=Q8WXD2 | |||
|association_with_transcript=17bp_to_BC009511_5end | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_6_at_SCG3_5end | |||
|id=chr15:51984388..51984400,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.13e-11!6;CL:0000031!2.13e-11!6;CL:0000404!2.13e-11!6;CL:0000047!1.92e-08!8;CL:0002322!6.33e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;6.93e-09;2!CL:0000242;6.93e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.42e-09,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5409!7.84e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.96e-16;4!DOID:1325;1.06e-09;7!DOID:3904;1.06e-09;7!DOID:154;6.93e-09;2!DOID:4236;6.93e-09;2!DOID:3905;9.68e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.59e-16,4;DOID:1325,1.18e-09,7;DOID:3904,1.18e-09,7;DOID:154,5.49e-09,2;DOID:4236,5.49e-09,2;DOID:3905,1.05e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.54e-70!82;UBERON:0001049!5.17e-70!57;UBERON:0005068!5.17e-70!57;UBERON:0006241!5.17e-70!57;UBERON:0007135!5.17e-70!57;UBERON:0000073!5.35e-67!94;UBERON:0001016!5.35e-67!94;UBERON:0005743!2.30e-66!86;UBERON:0002780!1.05e-60!41;UBERON:0001890!1.05e-60!41;UBERON:0006240!1.05e-60!41;UBERON:0002616!2.52e-60!59;UBERON:0003080!4.54e-59!42;UBERON:0000955!5.09e-58!69;UBERON:0006238!5.09e-58!69;UBERON:0002020!1.03e-48!34;UBERON:0003528!1.03e-48!34;UBERON:0001893!2.00e-48!34;UBERON:0003075!1.00e-47!86;UBERON:0007284!1.00e-47!86;UBERON:0002791!3.09e-46!33;UBERON:0002346!4.30e-45!90;UBERON:0001869!1.80e-44!32;UBERON:0003056!1.06e-40!61;UBERON:0002619!8.32e-38!22;UBERON:0004121!6.96e-35!169;UBERON:0000924!9.15e-34!173;UBERON:0006601!9.15e-34!173;UBERON:0007023!2.16e-33!115;UBERON:0001950!7.17e-33!20;UBERON:0000956!8.09e-33!25;UBERON:0000203!8.09e-33!25;UBERON:0000033!1.29e-29!123;UBERON:0000153!1.02e-27!129;UBERON:0007811!1.02e-27!129;UBERON:0002420!9.11e-18!9;UBERON:0007245!9.11e-18!9;UBERON:0010009!9.11e-18!9;UBERON:0010011!9.11e-18!9;UBERON:0000454!9.11e-18!9;UBERON:0002308!1.93e-17!9;UBERON:0000125!1.93e-17!9;UBERON:0000200!3.69e-16!6;UBERON:0000025!7.73e-16!194;UBERON:0000349!7.91e-14!5;UBERON:0001872!1.62e-13!5;UBERON:0001894!1.66e-13!7;UBERON:0006222!1.66e-13!7;UBERON:0009663!5.14e-13!7;UBERON:0003076!2.36e-12!15;UBERON:0003057!2.36e-12!15;UBERON:0001871!8.03e-12!7;UBERON:0004111!1.34e-10!241;UBERON:0002298!1.94e-10!8;UBERON:0004733!1.59e-09!12;UBERON:0002028!1.59e-09!12;UBERON:0007277!1.59e-09!12;UBERON:0002771!3.82e-09!3;UBERON:0004732!1.03e-08!13;UBERON:0002021!1.42e-08!5;UBERON:0000483!2.72e-08!309;UBERON:0006331!3.17e-08!3;UBERON:0000119!4.18e-08!312;UBERON:0000988!4.19e-08!3;UBERON:0000477!6.29e-08!286;UBERON:0000064!1.45e-07!219;UBERON:0002680!4.04e-07!9;UBERON:0001895!4.04e-07!9;UBERON:0010092!4.04e-07!9;UBERON:0000475!7.85e-07!365;UBERON:0001954!8.36e-07!2;UBERON:0003022!8.36e-07!2;UBERON:0002421!8.36e-07!2;UBERON:0002600!8.36e-07!2;UBERON:0003296!9.56e-07!4;UBERON:0010133!9.56e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003112;1.93e-16;1!UBERON:0011158;1.93e-16;1!UBERON:0003128;1.93e-16;1!UBERON:0001703;1.93e-16;1!UBERON:0002241;1.93e-16;1!UBERON:0002771;3.71e-09;2!UBERON:0000007;4.52e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003112,1.41e-16,1;UBERON:0011158,1.41e-16,1;UBERON:0003128,1.41e-16,1;UBERON:0001703,1.41e-16,1;UBERON:0002241,1.41e-16,1;UBERON:0004761,1.41e-16,1;UBERON:0009617,1.41e-16,1;UBERON:0002771,3.71e-09,2;UBERON:0000007,4.34e-09,2;UBERON:0005253,5.94e-09,2 | |||
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|short_description=p6@SCG3 | |||
}} |
Revision as of 07:24, 11 September 2013
Short description: | p6@SCG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SCG3_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 17bp_to_BC009511_5end |
EntrezGene: | SCG3 |
HGNC: | 13707 |
UniProt: | Q8WXD2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.42e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
olfactory region | 1.41e-16 | 1 |
primary subdivision of skull | 1.41e-16 | 1 |
cranium | 1.41e-16 | 1 |
neurocranium | 1.41e-16 | 1 |
chondrocranium | 1.41e-16 | 1 |
cartilaginous neurocranium | 1.41e-16 | 1 |
head paraxial mesoderm | 1.41e-16 | 1 |
middle temporal gyrus | 3.71e-09 | 2 |
pituitary gland | 4.34e-09 | 2 |
head mesenchyme | 5.94e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.59e-16 | 4 |
bronchus cancer | 1.18e-09 | 7 |
bronchogenic carcinoma | 1.18e-09 | 7 |
mixed cell type cancer | 5.49e-09 | 2 |
carcinosarcoma | 5.49e-09 | 2 |
lung carcinoma | 1.05e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.