FFCP PHASE1:Hg19::chr14:95080911..95080929,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=12|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=16|TSSclassifier=S|UniProt=P01011|association_with_transcript=69bp_to_J05176_5end|coexpression_cluster_id=C5|description=CAGE_peak_7_at_SERPINA3_5end|id=chr14:95080911..95080929,+|ontology_enrichment_celltype=CL:0000181!7.22e-07!12;CL:0000417!7.22e-07!12;CL:0000668!7.22e-07!12;CL:0000414!7.22e-07!12;CL:0000412!7.22e-07!12;CL:0000182!7.22e-07!12|ontology_enrichment_celltype_v019=CL:0000182;9.76e-09;12|ontology_enrichment_celltype_v019_2=CL:0000182,9.76e-09,12|ontology_enrichment_development_v019=UBERON:0005425;1.01e-11;1!UBERON:0010115;1.55e-11;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.09e-32!115;UBERON:0002298!1.36e-13!8;UBERON:0001049!7.08e-13!57;UBERON:0005068!7.08e-13!57;UBERON:0006241!7.08e-13!57;UBERON:0007135!7.08e-13!57;UBERON:0002616!7.04e-11!59;UBERON:0001017!4.31e-10!82;UBERON:0003075!1.61e-09!86;UBERON:0007284!1.61e-09!86;UBERON:0000955!2.01e-09!69;UBERON:0006238!2.01e-09!69;UBERON:0005743!2.36e-09!86;UBERON:0000073!7.28e-09!94;UBERON:0001016!7.28e-09!94;UBERON:0002346!7.80e-09!90;UBERON:0003076!1.31e-08!15;UBERON:0003057!1.31e-08!15;UBERON:0002308!1.77e-08!9;UBERON:0000125!1.77e-08!9;UBERON:0000477!3.44e-08!286;UBERON:0004111!5.10e-08!241;UBERON:0004732!7.44e-08!13;UBERON:0006331!1.35e-07!3;UBERON:0002020!1.40e-07!34;UBERON:0003528!1.40e-07!34;UBERON:0000062!1.72e-07!511;UBERON:0008835!1.77e-07!22;UBERON:0003894!1.77e-07!22;UBERON:0001896!1.81e-07!3;UBERON:0005290!1.81e-07!3;UBERON:0010096!1.81e-07!3;UBERON:0005057!1.91e-07!26;UBERON:0000475!1.96e-07!365;UBERON:0004921!2.51e-07!129;UBERON:0004185!2.51e-07!129;UBERON:0002107!3.23e-07!19;UBERON:0006925!3.23e-07!19;UBERON:0008836!3.23e-07!19;UBERON:0000025!4.39e-07!194;UBERON:0009854!4.49e-07!23;UBERON:0003080!7.51e-07!42|ontology_enrichment_uberon_v019=UBERON:0002107;3.54e-14;19!UBERON:0006925;3.54e-14;19!UBERON:0000949;1.50e-12;43!UBERON:0000029;1.01e-11;1!UBERON:0000941;1.01e-11;1!UBERON:0001785;1.01e-11;1!UBERON:0002464;1.01e-11;1!UBERON:0004904;1.01e-11;1!UBERON:0001021;1.01e-11;1!UBERON:0002363;1.55e-11;1!UBERON:0002423;9.50e-11;25!UBERON:0001264;5.79e-10;10!UBERON:0002365;1.22e-08;31!UBERON:0002330;1.22e-08;31!UBERON:0002368;1.59e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0000949,3.10e-14,45;UBERON:0002107,3.54e-14,19;UBERON:0006925,3.54e-14,19;UBERON:0008836,3.54e-14,19;UBERON:0008835,3.13e-12,22;UBERON:0003894,3.13e-12,22;UBERON:0000029,8.64e-12,1;UBERON:0000941,1.07e-11,1;UBERON:0001785,1.07e-11,1;UBERON:0002464,1.07e-11,1;UBERON:0004904,1.07e-11,1;UBERON:0001021,1.07e-11,1;UBERON:0003902,1.07e-11,1;UBERON:0005425,1.07e-11,1;UBERON:0009854,1.08e-11,23;UBERON:0002363,1.63e-11,1;UBERON:0007645,1.63e-11,1;UBERON:0007647,1.63e-11,1;UBERON:0010115,1.63e-11,1;UBERON:0007499,9.50e-11,25;UBERON:0009497,9.50e-11,25;UBERON:0000015,9.50e-11,25;UBERON:0002423,9.50e-11,25;UBERON:0006235,9.50e-11,25;UBERON:0004161,9.50e-11,25;UBERON:0009856,2.49e-10,26;UBERON:0001264,5.97e-10,10;UBERON:0005177,4.20e-09,101;UBERON:0002365,1.22e-08,31;UBERON:0002330,1.22e-08,31;UBERON:0002368,1.24e-07,35;UBERON:0005172,9.49e-07,54;UBERON:0005173,9.49e-07,54|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,4.86634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0.269421344139376,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.3642621876408,74.6948684674996,54.9434613213706,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,3.01260162485693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.278304294485554,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67058417487502,0,0,0,1.5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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=12 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=16 | |||
|TSSclassifier=S | |||
|UniProt=P01011 | |||
|association_with_transcript=69bp_to_J05176_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_7_at_SERPINA3_5end | |||
|id=chr14:95080911..95080929,+ | |||
|ontology_enrichment_celltype=CL:0000181!7.22e-07!12;CL:0000417!7.22e-07!12;CL:0000668!7.22e-07!12;CL:0000414!7.22e-07!12;CL:0000412!7.22e-07!12;CL:0000182!7.22e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;9.76e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,9.76e-09,12 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.01e-11;1!UBERON:0010115;1.55e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.09e-32!115;UBERON:0002298!1.36e-13!8;UBERON:0001049!7.08e-13!57;UBERON:0005068!7.08e-13!57;UBERON:0006241!7.08e-13!57;UBERON:0007135!7.08e-13!57;UBERON:0002616!7.04e-11!59;UBERON:0001017!4.31e-10!82;UBERON:0003075!1.61e-09!86;UBERON:0007284!1.61e-09!86;UBERON:0000955!2.01e-09!69;UBERON:0006238!2.01e-09!69;UBERON:0005743!2.36e-09!86;UBERON:0000073!7.28e-09!94;UBERON:0001016!7.28e-09!94;UBERON:0002346!7.80e-09!90;UBERON:0003076!1.31e-08!15;UBERON:0003057!1.31e-08!15;UBERON:0002308!1.77e-08!9;UBERON:0000125!1.77e-08!9;UBERON:0000477!3.44e-08!286;UBERON:0004111!5.10e-08!241;UBERON:0004732!7.44e-08!13;UBERON:0006331!1.35e-07!3;UBERON:0002020!1.40e-07!34;UBERON:0003528!1.40e-07!34;UBERON:0000062!1.72e-07!511;UBERON:0008835!1.77e-07!22;UBERON:0003894!1.77e-07!22;UBERON:0001896!1.81e-07!3;UBERON:0005290!1.81e-07!3;UBERON:0010096!1.81e-07!3;UBERON:0005057!1.91e-07!26;UBERON:0000475!1.96e-07!365;UBERON:0004921!2.51e-07!129;UBERON:0004185!2.51e-07!129;UBERON:0002107!3.23e-07!19;UBERON:0006925!3.23e-07!19;UBERON:0008836!3.23e-07!19;UBERON:0000025!4.39e-07!194;UBERON:0009854!4.49e-07!23;UBERON:0003080!7.51e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.54e-14;19!UBERON:0006925;3.54e-14;19!UBERON:0000949;1.50e-12;43!UBERON:0000029;1.01e-11;1!UBERON:0000941;1.01e-11;1!UBERON:0001785;1.01e-11;1!UBERON:0002464;1.01e-11;1!UBERON:0004904;1.01e-11;1!UBERON:0001021;1.01e-11;1!UBERON:0002363;1.55e-11;1!UBERON:0002423;9.50e-11;25!UBERON:0001264;5.79e-10;10!UBERON:0002365;1.22e-08;31!UBERON:0002330;1.22e-08;31!UBERON:0002368;1.59e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000949,3.10e-14,45;UBERON:0002107,3.54e-14,19;UBERON:0006925,3.54e-14,19;UBERON:0008836,3.54e-14,19;UBERON:0008835,3.13e-12,22;UBERON:0003894,3.13e-12,22;UBERON:0000029,8.64e-12,1;UBERON:0000941,1.07e-11,1;UBERON:0001785,1.07e-11,1;UBERON:0002464,1.07e-11,1;UBERON:0004904,1.07e-11,1;UBERON:0001021,1.07e-11,1;UBERON:0003902,1.07e-11,1;UBERON:0005425,1.07e-11,1;UBERON:0009854,1.08e-11,23;UBERON:0002363,1.63e-11,1;UBERON:0007645,1.63e-11,1;UBERON:0007647,1.63e-11,1;UBERON:0010115,1.63e-11,1;UBERON:0007499,9.50e-11,25;UBERON:0009497,9.50e-11,25;UBERON:0000015,9.50e-11,25;UBERON:0002423,9.50e-11,25;UBERON:0006235,9.50e-11,25;UBERON:0004161,9.50e-11,25;UBERON:0009856,2.49e-10,26;UBERON:0001264,5.97e-10,10;UBERON:0005177,4.20e-09,101;UBERON:0002365,1.22e-08,31;UBERON:0002330,1.22e-08,31;UBERON:0002368,1.24e-07,35;UBERON:0005172,9.49e-07,54;UBERON:0005173,9.49e-07,54 | |||
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|short_description=p7@SERPINA3 | |||
}} |
Revision as of 06:10, 11 September 2013
Short description: | p7@SERPINA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SERPINA3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 69bp_to_J05176_5end |
EntrezGene: | SERPINA3 |
HGNC: | 16 |
UniProt: | P01011 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 9.76e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
endocrine system | 3.10e-14 | 45 |
liver | 3.54e-14 | 19 |
digestive gland | 3.54e-14 | 19 |
liver bud | 3.54e-14 | 19 |
hepatic diverticulum | 3.13e-12 | 22 |
liver primordium | 3.13e-12 | 22 |
lymph node | 8.64e-12 | 1 |
cranial nerve II | 1.07e-11 | 1 |
cranial nerve | 1.07e-11 | 1 |
nerve trunk | 1.07e-11 | 1 |
nerve connecting eye with brain | 1.07e-11 | 1 |
nerve | 1.07e-11 | 1 |
retinal neural layer | 1.07e-11 | 1 |
presumptive neural retina | 1.07e-11 | 1 |
digestive tract diverticulum | 1.08e-11 | 23 |
dura mater | 1.63e-11 | 1 |
future meninx | 1.63e-11 | 1 |
ectomeninx | 1.63e-11 | 1 |
future dura mater | 1.63e-11 | 1 |
epithelial sac | 9.50e-11 | 25 |
epithelium of foregut-midgut junction | 9.50e-11 | 25 |
anatomical boundary | 9.50e-11 | 25 |
hepatobiliary system | 9.50e-11 | 25 |
foregut-midgut junction | 9.50e-11 | 25 |
septum transversum | 9.50e-11 | 25 |
sac | 2.49e-10 | 26 |
pancreas | 5.97e-10 | 10 |
trunk region element | 4.20e-09 | 101 |
exocrine gland | 1.22e-08 | 31 |
exocrine system | 1.22e-08 | 31 |
endocrine gland | 1.24e-07 | 35 |
abdomen element | 9.49e-07 | 54 |
abdominal segment element | 9.49e-07 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.