FFCP PHASE1:Hg19::chr14:57268994..57269015,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C535|description=CAGE_peak_at_chr14:57268994..57269015,+|id=chr14:57268994..57269015,+|ontology_enrichment_celltype=CL:0002322!2.09e-24!5;CL:0000540!1.31e-20!6;CL:0000031!1.31e-20!6;CL:0000404!1.31e-20!6;CL:0000047!1.60e-15!8;CL:0002319!6.22e-10!25;CL:0000147!6.16e-09!14;CL:0000133!7.12e-09!59;CL:0000148!2.45e-07!10;CL:0000541!2.45e-07!10;CL:0000221!3.40e-07!71|ontology_enrichment_celltype_v019=CL:0002586;1.67e-09;3!CL:0000149;1.92e-07;4!CL:0000243;7.32e-07;15!CL:0000125;7.32e-07;15|ontology_enrichment_celltype_v019_2=CL:0002586,1.67e-09,3;CL:0000149,1.92e-07,4;CL:0000243,7.21e-07,15;CL:0000125,7.21e-07,15;CL:0000030,7.21e-07,15;CL:0000339,7.21e-07,15|ontology_enrichment_development_v019=UBERON:0006238;4.12e-10;10!UBERON:0003056;1.14e-09;3!CL:0000339;7.32e-07;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;9.22e-11;22!DOID:2994;9.22e-11;22!DOID:3093;2.39e-09;11!DOID:5409;1.44e-07;4|ontology_enrichment_disease_v019_2=DOID:3095,9.38e-11,22;DOID:2994,9.38e-11,22;DOID:3093,2.35e-09,11;DOID:5409,1.49e-07,4|ontology_enrichment_uberon=UBERON:0000966!9.14e-15!5;UBERON:0005388!9.14e-15!5;UBERON:0001802!9.14e-15!5;UBERON:0005743!1.77e-14!86;UBERON:0000073!6.73e-13!94;UBERON:0001016!6.73e-13!94;UBERON:0001896!4.66e-11!3;UBERON:0005290!4.66e-11!3;UBERON:0010096!4.66e-11!3;UBERON:0001017!5.46e-11!82;UBERON:0002336!1.07e-08!1;UBERON:0001018!1.07e-08!1;UBERON:0002473!1.07e-08!1;UBERON:0005340!1.07e-08!1;UBERON:0002316!1.07e-08!1;UBERON:0003544!1.07e-08!1;UBERON:0001020!1.07e-08!1;UBERON:0005970!1.07e-08!1;UBERON:0002437!1.07e-08!1;UBERON:0000924!4.76e-07!173;UBERON:0006601!4.76e-07!173;UBERON:0002346!8.35e-07!90|ontology_enrichment_uberon_v019=UBERON:0000966;9.44e-21;5!UBERON:0005388;9.44e-21;5!UBERON:0001802;9.44e-21;5!UBERON:0000970;7.68e-12;20!UBERON:0002104;2.61e-11;21!UBERON:0000020;2.19e-10;23!UBERON:0001032;5.57e-10;24!UBERON:0004456;5.57e-10;24!UBERON:0001781;1.67e-09;3!UBERON:0001782;1.67e-09;3!UBERON:0002346;1.92e-07;4!UBERON:0000923;1.92e-07;4!UBERON:0010316;1.92e-07;4!UBERON:0005291;1.92e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.71e-17,6;UBERON:0005388,1.71e-17,6;UBERON:0001802,1.71e-17,6;UBERON:0000970,2.52e-11,21;UBERON:0002104,2.52e-11,21;UBERON:0000020,5.40e-10,24;UBERON:0001032,5.40e-10,24;UBERON:0004456,5.40e-10,24;UBERON:0001782,1.67e-09,3;UBERON:0005424,1.67e-09,3;UBERON:0001781,1.92e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.116193942869518,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03382666702479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.137539436597234,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,6.22568857213039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52759276958623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,4.7404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,1.09265571963696,2.02717601618299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr14:57268994..57269015,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C535 | |||
|description=CAGE_peak_at_chr14:57268994..57269015,+ | |||
|id=chr14:57268994..57269015,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.09e-24!5;CL:0000540!1.31e-20!6;CL:0000031!1.31e-20!6;CL:0000404!1.31e-20!6;CL:0000047!1.60e-15!8;CL:0002319!6.22e-10!25;CL:0000147!6.16e-09!14;CL:0000133!7.12e-09!59;CL:0000148!2.45e-07!10;CL:0000541!2.45e-07!10;CL:0000221!3.40e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002586;1.67e-09;3!CL:0000149;1.92e-07;4!CL:0000243;7.32e-07;15!CL:0000125;7.32e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.67e-09,3;CL:0000149,1.92e-07,4;CL:0000243,7.21e-07,15;CL:0000125,7.21e-07,15;CL:0000030,7.21e-07,15;CL:0000339,7.21e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.12e-10;10!UBERON:0003056;1.14e-09;3!CL:0000339;7.32e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;9.22e-11;22!DOID:2994;9.22e-11;22!DOID:3093;2.39e-09;11!DOID:5409;1.44e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.38e-11,22;DOID:2994,9.38e-11,22;DOID:3093,2.35e-09,11;DOID:5409,1.49e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!9.14e-15!5;UBERON:0005388!9.14e-15!5;UBERON:0001802!9.14e-15!5;UBERON:0005743!1.77e-14!86;UBERON:0000073!6.73e-13!94;UBERON:0001016!6.73e-13!94;UBERON:0001896!4.66e-11!3;UBERON:0005290!4.66e-11!3;UBERON:0010096!4.66e-11!3;UBERON:0001017!5.46e-11!82;UBERON:0002336!1.07e-08!1;UBERON:0001018!1.07e-08!1;UBERON:0002473!1.07e-08!1;UBERON:0005340!1.07e-08!1;UBERON:0002316!1.07e-08!1;UBERON:0003544!1.07e-08!1;UBERON:0001020!1.07e-08!1;UBERON:0005970!1.07e-08!1;UBERON:0002437!1.07e-08!1;UBERON:0000924!4.76e-07!173;UBERON:0006601!4.76e-07!173;UBERON:0002346!8.35e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;9.44e-21;5!UBERON:0005388;9.44e-21;5!UBERON:0001802;9.44e-21;5!UBERON:0000970;7.68e-12;20!UBERON:0002104;2.61e-11;21!UBERON:0000020;2.19e-10;23!UBERON:0001032;5.57e-10;24!UBERON:0004456;5.57e-10;24!UBERON:0001781;1.67e-09;3!UBERON:0001782;1.67e-09;3!UBERON:0002346;1.92e-07;4!UBERON:0000923;1.92e-07;4!UBERON:0010316;1.92e-07;4!UBERON:0005291;1.92e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.71e-17,6;UBERON:0005388,1.71e-17,6;UBERON:0001802,1.71e-17,6;UBERON:0000970,2.52e-11,21;UBERON:0002104,2.52e-11,21;UBERON:0000020,5.40e-10,24;UBERON:0001032,5.40e-10,24;UBERON:0004456,5.40e-10,24;UBERON:0001782,1.67e-09,3;UBERON:0005424,1.67e-09,3;UBERON:0001781,1.92e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.116193942869518,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03382666702479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.137539436597234,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,6.22568857213039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52759276958623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,4.7404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,1.09265571963696,2.02717601618299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr14:57268994..57269015,+ | |||
}} |
Revision as of 04:52, 11 September 2013
Short description: | p@chr14:57268994..57269015, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:57268994..57269015, + |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.67e-09 | 3 |
visual pigment cell | 1.92e-07 | 4 |
glial cell (sensu Vertebrata) | 7.21e-07 | 15 |
glial cell | 7.21e-07 | 15 |
glioblast | 7.21e-07 | 15 |
glioblast (sensu Vertebrata) | 7.21e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
retina | 1.71e-17 | 6 |
photoreceptor array | 1.71e-17 | 6 |
posterior segment of eyeball | 1.71e-17 | 6 |
eye | 2.52e-11 | 21 |
visual system | 2.52e-11 | 21 |
sense organ | 5.40e-10 | 24 |
sensory system | 5.40e-10 | 24 |
entire sense organ system | 5.40e-10 | 24 |
pigmented layer of retina | 1.67e-09 | 3 |
presumptive retinal pigmented epithelium | 1.67e-09 | 3 |
layer of retina | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.38e-11 | 22 |
germ cell cancer | 9.38e-11 | 22 |
nervous system cancer | 2.35e-09 | 11 |
lung small cell carcinoma | 1.49e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.