FFCP PHASE1:Hg19::chr14:36989940..36989957,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7080|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11825|TSSclassifier=S|UniProt=F8VVG2|association_with_transcript=196bp_to_ENST00000546983_5end|coexpression_cluster_id=C3426|description=CAGE_peak_2_at_NKX2-1_5end|id=chr14:36989940..36989957,-|ontology_enrichment_celltype=CL:0002368!2.44e-08!13;CL:0002076!1.15e-07!43;CL:0000082!3.13e-07!19|ontology_enrichment_celltype_v019=CL:0000322;1.64e-07;3|ontology_enrichment_celltype_v019_2=CL:0000322,1.49e-07,3|ontology_enrichment_development_v019=UBERON:0007123;6.67e-16;5!UBERON:0010122;1.99e-10;2!UBERON:0008947;9.68e-08;29!UBERON:0001041;1.89e-07;30|ontology_enrichment_disease=DOID:305!4.18e-12!106;DOID:1749!6.92e-10!14;DOID:162!4.02e-09!235;DOID:0050687!7.36e-09!143;DOID:14566!1.12e-08!239;DOID:3905!8.87e-08!9;DOID:0050615!3.40e-07!16|ontology_enrichment_disease_v019=DOID:0050615;1.01e-07;16|ontology_enrichment_disease_v019_2=DOID:0050615,1.03e-07,16|ontology_enrichment_uberon=UBERON:0008947!9.58e-20!38;UBERON:0003258!9.58e-20!38;UBERON:0000065!1.07e-19!53;UBERON:0001004!9.12e-18!72;UBERON:0004119!3.23e-12!169;UBERON:0000925!3.23e-12!169;UBERON:0006595!3.23e-12!169;UBERON:0000072!1.30e-11!46;UBERON:0002048!1.96e-11!22;UBERON:0000117!1.96e-11!22;UBERON:0000171!1.96e-11!22;UBERON:0000170!1.96e-11!22;UBERON:0005597!1.96e-11!22;UBERON:0000118!1.96e-11!22;UBERON:0001007!3.92e-11!155;UBERON:0001555!3.92e-11!155;UBERON:0007026!3.92e-11!155;UBERON:0005178!4.13e-10!34;UBERON:0002224!4.13e-10!34;UBERON:0009663!6.41e-10!7;UBERON:0002780!7.46e-10!41;UBERON:0001890!7.46e-10!41;UBERON:0006240!7.46e-10!41;UBERON:0005181!1.03e-09!35;UBERON:0003080!1.60e-09!42;UBERON:0001737!2.51e-09!9;UBERON:0001041!4.94e-09!98;UBERON:0004921!5.34e-09!129;UBERON:0004185!5.34e-09!129;UBERON:0000369!1.90e-08!4;UBERON:0002435!1.90e-08!4;UBERON:0000204!1.90e-08!4;UBERON:0010082!1.90e-08!4;UBERON:0000077!2.71e-08!130;UBERON:0005153!6.33e-08!37;UBERON:0002046!1.19e-07!5;UBERON:0004117!1.19e-07!5;UBERON:0007689!1.19e-07!5;UBERON:0007123!1.19e-07!5;UBERON:0003091!1.19e-07!5;UBERON:0002308!1.57e-07!9;UBERON:0002420!1.57e-07!9;UBERON:0000125!1.57e-07!9;UBERON:0007245!1.57e-07!9;UBERON:0010009!1.57e-07!9;UBERON:0010011!1.57e-07!9;UBERON:0000454!1.57e-07!9;UBERON:0002791!2.17e-07!33;UBERON:0004802!3.13e-07!19;UBERON:0000115!3.13e-07!19;UBERON:0001893!4.32e-07!34;UBERON:0005383!5.51e-07!3;UBERON:0005382!5.51e-07!3|ontology_enrichment_uberon_v019=UBERON:0002046;6.67e-16;5!UBERON:0002048;1.71e-13;22!UBERON:0000117;1.71e-13;22!UBERON:0000171;1.71e-13;22!UBERON:0000170;1.71e-13;22!UBERON:0001873;1.99e-10;2!UBERON:0004821;1.64e-07;3!UBERON:0007499;1.64e-07;3!UBERON:0003215;1.64e-07;3!UBERON:0010368;1.64e-07;3!UBERON:0009911;1.64e-07;3!UBERON:0002299;1.64e-07;3!UBERON:0006524;1.64e-07;3!UBERON:0008874;1.64e-07;3!UBERON:0002169;1.64e-07;3!UBERON:0004894;1.64e-07;3!UBERON:0005383;3.16e-07;3!UBERON:0005382;3.16e-07;3!UBERON:0005178;3.23e-07;34!UBERON:0002224;3.23e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0002046,5.00e-16,5;UBERON:0004117,5.00e-16,5;UBERON:0007689,5.00e-16,5;UBERON:0007123,5.00e-16,5;UBERON:0003091,5.00e-16,5;UBERON:0002048,1.58e-13,22;UBERON:0000117,1.58e-13,22;UBERON:0000171,1.58e-13,22;UBERON:0000170,1.58e-13,22;UBERON:0005597,1.58e-13,22;UBERON:0000118,1.58e-13,22;UBERON:0005911,2.55e-10,82;UBERON:0001873,2.72e-10,2;UBERON:0010122,2.72e-10,2;UBERON:0005153,1.58e-09,37;UBERON:0005178,2.72e-08,34;UBERON:0002224,2.72e-08,34;UBERON:0005181,5.10e-08,35;UBERON:0004821,1.49e-07,3;UBERON:0003215,1.49e-07,3;UBERON:0010368,1.49e-07,3;UBERON:0009911,1.49e-07,3;UBERON:0002299,1.49e-07,3;UBERON:0006524,1.49e-07,3;UBERON:0008874,1.49e-07,3;UBERON:0002169,1.49e-07,3;UBERON:0004894,1.49e-07,3;UBERON:0009722,2.51e-07,11;UBERON:0007690,2.51e-07,11;UBERON:0008947,2.77e-07,38;UBERON:0003258,2.77e-07,38;UBERON:0005157,3.65e-07,47;UBERON:0005383,3.88e-07,3;UBERON:0005382,3.88e-07,3;UBERON:0001007,6.99e-07,145;UBERON:0001555,6.99e-07,145;UBERON:0007026,6.99e-07,145|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.337169380156203,0.241011029883482,0.661763836394364,0,0.237270619111097,0.404493924480493,0.588664395376038,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11825 | |||
|TSSclassifier=S | |||
|UniProt=F8VVG2 | |||
|association_with_transcript=196bp_to_ENST00000546983_5end | |||
|coexpression_cluster_id=C3426 | |||
|description=CAGE_peak_2_at_NKX2-1_5end | |||
|id=chr14:36989940..36989957,- | |||
|ontology_enrichment_celltype=CL:0002368!2.44e-08!13;CL:0002076!1.15e-07!43;CL:0000082!3.13e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.64e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.49e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0007123;6.67e-16;5!UBERON:0010122;1.99e-10;2!UBERON:0008947;9.68e-08;29!UBERON:0001041;1.89e-07;30 | |||
|ontology_enrichment_disease=DOID:305!4.18e-12!106;DOID:1749!6.92e-10!14;DOID:162!4.02e-09!235;DOID:0050687!7.36e-09!143;DOID:14566!1.12e-08!239;DOID:3905!8.87e-08!9;DOID:0050615!3.40e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:0050615;1.01e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:0050615,1.03e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0008947!9.58e-20!38;UBERON:0003258!9.58e-20!38;UBERON:0000065!1.07e-19!53;UBERON:0001004!9.12e-18!72;UBERON:0004119!3.23e-12!169;UBERON:0000925!3.23e-12!169;UBERON:0006595!3.23e-12!169;UBERON:0000072!1.30e-11!46;UBERON:0002048!1.96e-11!22;UBERON:0000117!1.96e-11!22;UBERON:0000171!1.96e-11!22;UBERON:0000170!1.96e-11!22;UBERON:0005597!1.96e-11!22;UBERON:0000118!1.96e-11!22;UBERON:0001007!3.92e-11!155;UBERON:0001555!3.92e-11!155;UBERON:0007026!3.92e-11!155;UBERON:0005178!4.13e-10!34;UBERON:0002224!4.13e-10!34;UBERON:0009663!6.41e-10!7;UBERON:0002780!7.46e-10!41;UBERON:0001890!7.46e-10!41;UBERON:0006240!7.46e-10!41;UBERON:0005181!1.03e-09!35;UBERON:0003080!1.60e-09!42;UBERON:0001737!2.51e-09!9;UBERON:0001041!4.94e-09!98;UBERON:0004921!5.34e-09!129;UBERON:0004185!5.34e-09!129;UBERON:0000369!1.90e-08!4;UBERON:0002435!1.90e-08!4;UBERON:0000204!1.90e-08!4;UBERON:0010082!1.90e-08!4;UBERON:0000077!2.71e-08!130;UBERON:0005153!6.33e-08!37;UBERON:0002046!1.19e-07!5;UBERON:0004117!1.19e-07!5;UBERON:0007689!1.19e-07!5;UBERON:0007123!1.19e-07!5;UBERON:0003091!1.19e-07!5;UBERON:0002308!1.57e-07!9;UBERON:0002420!1.57e-07!9;UBERON:0000125!1.57e-07!9;UBERON:0007245!1.57e-07!9;UBERON:0010009!1.57e-07!9;UBERON:0010011!1.57e-07!9;UBERON:0000454!1.57e-07!9;UBERON:0002791!2.17e-07!33;UBERON:0004802!3.13e-07!19;UBERON:0000115!3.13e-07!19;UBERON:0001893!4.32e-07!34;UBERON:0005383!5.51e-07!3;UBERON:0005382!5.51e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002046;6.67e-16;5!UBERON:0002048;1.71e-13;22!UBERON:0000117;1.71e-13;22!UBERON:0000171;1.71e-13;22!UBERON:0000170;1.71e-13;22!UBERON:0001873;1.99e-10;2!UBERON:0004821;1.64e-07;3!UBERON:0007499;1.64e-07;3!UBERON:0003215;1.64e-07;3!UBERON:0010368;1.64e-07;3!UBERON:0009911;1.64e-07;3!UBERON:0002299;1.64e-07;3!UBERON:0006524;1.64e-07;3!UBERON:0008874;1.64e-07;3!UBERON:0002169;1.64e-07;3!UBERON:0004894;1.64e-07;3!UBERON:0005383;3.16e-07;3!UBERON:0005382;3.16e-07;3!UBERON:0005178;3.23e-07;34!UBERON:0002224;3.23e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,5.00e-16,5;UBERON:0004117,5.00e-16,5;UBERON:0007689,5.00e-16,5;UBERON:0007123,5.00e-16,5;UBERON:0003091,5.00e-16,5;UBERON:0002048,1.58e-13,22;UBERON:0000117,1.58e-13,22;UBERON:0000171,1.58e-13,22;UBERON:0000170,1.58e-13,22;UBERON:0005597,1.58e-13,22;UBERON:0000118,1.58e-13,22;UBERON:0005911,2.55e-10,82;UBERON:0001873,2.72e-10,2;UBERON:0010122,2.72e-10,2;UBERON:0005153,1.58e-09,37;UBERON:0005178,2.72e-08,34;UBERON:0002224,2.72e-08,34;UBERON:0005181,5.10e-08,35;UBERON:0004821,1.49e-07,3;UBERON:0003215,1.49e-07,3;UBERON:0010368,1.49e-07,3;UBERON:0009911,1.49e-07,3;UBERON:0002299,1.49e-07,3;UBERON:0006524,1.49e-07,3;UBERON:0008874,1.49e-07,3;UBERON:0002169,1.49e-07,3;UBERON:0004894,1.49e-07,3;UBERON:0009722,2.51e-07,11;UBERON:0007690,2.51e-07,11;UBERON:0008947,2.77e-07,38;UBERON:0003258,2.77e-07,38;UBERON:0005157,3.65e-07,47;UBERON:0005383,3.88e-07,3;UBERON:0005382,3.88e-07,3;UBERON:0001007,6.99e-07,145;UBERON:0001555,6.99e-07,145;UBERON:0007026,6.99e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.337169380156203,0.241011029883482,0.661763836394364,0,0.237270619111097,0.404493924480493,0.588664395376038,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,1.92295876118521,1.73269949833235,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,1.02090169995667,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,3.20088922641049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,12.8786498958076,0.19924798825107,0,0,13.192660042778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.3913358269345,0,0,0,0,2.65722415744152,1.08536794762867,0,0,0,0,0,3.62501735124369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.247127877893006,0.104421949505455,0.067401132980677,0,0.468528891450678,0,0.782658475728359,0,0,0,0.30607276163049,0,0.901940516486955,0.518440956986236,0,0,0.313932918407225,0,0.284609546029793,0,1.21491816834592,0.587954384486266,0,0,0,0,0,0,0,0,0,0,0,0,4.10657903743086,0,0,1.39866726707491,0,2.63434171181606,0,0,0,0,0,0,1.12198039399954,0,0.600420288709789,0.684526894459965,0,0,2.36598618851383,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,2.68347750079413,0,0,7.92002523895549,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.54299300541557,7.23139803458463,6.21358583020793,0,0,0,0,0,0,0,0,2.04170325125305,0,0,0.1251909307065,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,4.16052397660995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0.999936979274649,0.213383459388282,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80342448971282,0,0,0.321146125482298,0,0,0,0,0,0,0,0.588886311006154,1.76954585021611,0,0.115525666150338,0,0.690359926060101,0,0,0,0,0,3.27543835020193,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,1.21393120847326,0.91064876540519,0,0,0,0,0.0657727735628491,7.44621197569,0,0,0.628462359664008,0.280272163313789,0,0,0,0,0,0.697448552208751,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,0,0.118920090777569,0.5647304101948,0,8.15199355260037,0,0,0.940634592723046,0,5.65623713043902,0,0,0,0,0,0,0,1.07132363163395,1.76447435857846,0,0,0,0,0,0.0679914901909147,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0.639701945702943,1.1903221573187,0,0,2.69116470193472,8.08318910132694,1.81905470062397,0,0,0,0.645499848534087,0.665320713092027,0.244209805832924,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@NKX2-1 | |||
}} |
Revision as of 04:28, 11 September 2013
Short description: | p2@NKX2-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_NKX2-1_5end |
Coexpression cluster: | C3426_bronchioalveolar_anaplastic_astrocytoma_small_somatostatinoma_large_prostate |
Association with transcript: | 196bp_to_ENST00000546983_5end |
EntrezGene: | NKX2-1 |
HGNC: | 11825 |
UniProt: | F8VVG2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.49e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 5.00e-16 | 5 |
pharyngeal pouch | 5.00e-16 | 5 |
thyroid diverticulum | 5.00e-16 | 5 |
pharyngeal pouch 2 | 5.00e-16 | 5 |
thyroid primordium | 5.00e-16 | 5 |
lung | 1.58e-13 | 22 |
respiratory tube | 1.58e-13 | 22 |
respiration organ | 1.58e-13 | 22 |
pair of lungs | 1.58e-13 | 22 |
lung primordium | 1.58e-13 | 22 |
lung bud | 1.58e-13 | 22 |
endo-epithelium | 2.55e-10 | 82 |
caudate nucleus | 2.72e-10 | 2 |
future caudate nucleus | 2.72e-10 | 2 |
epithelial bud | 1.58e-09 | 37 |
thoracic cavity element | 2.72e-08 | 34 |
thoracic cavity | 2.72e-08 | 34 |
thoracic segment organ | 5.10e-08 | 35 |
pulmonary alveolus epithelium | 1.49e-07 | 3 |
alveolus | 1.49e-07 | 3 |
pulmonary lobule | 1.49e-07 | 3 |
lobule | 1.49e-07 | 3 |
alveolus of lung | 1.49e-07 | 3 |
alveolar system | 1.49e-07 | 3 |
pulmonary acinus | 1.49e-07 | 3 |
alveolar sac | 1.49e-07 | 3 |
alveolar wall | 1.49e-07 | 3 |
entire pharyngeal arch endoderm | 2.51e-07 | 11 |
early pharyngeal endoderm | 2.51e-07 | 11 |
respiratory primordium | 2.77e-07 | 38 |
endoderm of foregut | 2.77e-07 | 38 |
epithelial fold | 3.65e-07 | 47 |
caudate-putamen | 3.88e-07 | 3 |
dorsal striatum | 3.88e-07 | 3 |
digestive system | 6.99e-07 | 145 |
digestive tract | 6.99e-07 | 145 |
primitive gut | 6.99e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
respiratory system cancer | 1.03e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.