FFCP PHASE1:Hg19::chr13:76210805..76210826,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4008|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6646|TSSclassifier=S|UniProt=F8J2B5|association_with_transcript=11bp_to_FJ711162_5end|coexpression_cluster_id=C1189|description=CAGE_peak_17_at_LMO7_5end|id=chr13:76210805..76210826,+|ontology_enrichment_celltype=CL:0000055!2.57e-33!180;CL:0000057!2.66e-27!75;CL:0002620!3.85e-12!23;CL:0000048!2.37e-10!430;CL:0000723!4.75e-10!436;CL:0002334!1.25e-09!12;CL:0000034!3.50e-09!444;CL:0000144!3.09e-08!625;CL:0000192!3.27e-07!42;CL:0000514!3.27e-07!42;CL:0000548!4.57e-07!679;CL:0000004!4.57e-07!679;CL:0000255!4.57e-07!679;CL:0000680!6.15e-07!57;CL:0000056!6.15e-07!57;CL:0000355!6.15e-07!57;CL:0000012!8.38e-07!682|ontology_enrichment_celltype_v019=CL:0002620;1.33e-17;23!CL:0002334;1.75e-10;12!CL:1000306;8.24e-10;4!CL:0002547;8.24e-10;4!CL:0002580;2.06e-09;3!CL:0002579;4.87e-09;3!CL:0000515;2.95e-08;3!CL:0000057;5.04e-08;73!CL:0002622;1.26e-07;3!CL:0002320;2.48e-07;188|ontology_enrichment_celltype_v019_2=CL:0000057,6.06e-25,76;CL:0002620,8.74e-18,23;CL:0000048,1.48e-10,427;CL:0002334,1.55e-10,12;CL:0000723,3.44e-10,433;CL:1000306,8.09e-10,4;CL:0002547,8.09e-10,4;CL:0000034,1.02e-09,441;CL:0002580,1.96e-09,3;CL:0002579,5.23e-09,3;CL:0000134,1.86e-08,354;CL:0002320,4.85e-08,361;CL:0002622,1.98e-07,3;CL:0000136,2.41e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;6.25e-12;5!DOID:450;6.25e-12;5!DOID:66;6.25e-12;5!DOID:423;6.25e-12;5!DOID:0080000;6.25e-12;5!DOID:11722;6.25e-12;5|ontology_enrichment_disease_v019_2=DOID:17,7.52e-12,5;DOID:450,7.52e-12,5;DOID:66,7.52e-12,5;DOID:423,7.52e-12,5;DOID:0080000,7.52e-12,5;DOID:11722,7.52e-12,5|ontology_enrichment_uberon=UBERON:0000914!1.11e-09!83;UBERON:0002329!1.11e-09!83;UBERON:0003077!1.11e-09!83;UBERON:0003059!1.11e-09!83;UBERON:0007282!1.11e-09!83;UBERON:0009618!1.11e-09!83;UBERON:0007285!1.11e-09!83;UBERON:0002097!1.74e-08!40;UBERON:0002199!2.52e-08!45;UBERON:0002416!2.52e-08!45;UBERON:0003102!1.01e-07!95;UBERON:0003688!2.44e-07!6;UBERON:0002358!2.44e-07!6;UBERON:0003684!2.44e-07!6;UBERON:0001178!2.44e-07!6|ontology_enrichment_uberon_v019=UBERON:0003688;2.29e-11;6!UBERON:0002358;2.29e-11;6!UBERON:0003684;2.29e-11;6!UBERON:0001178;2.29e-11;6!UBERON:0002097;7.93e-10;41!UBERON:0004797;8.24e-10;4!UBERON:0000415;8.24e-10;4!UBERON:0007240;8.24e-10;4!UBERON:0005742;8.24e-10;4!UBERON:0005734;8.24e-10;4!UBERON:0004664;8.24e-10;4!UBERON:0004663;8.24e-10;4!UBERON:0002199;1.87e-08;46!UBERON:0002416;1.87e-08;46!UBERON:0000947;1.14e-07;21!UBERON:0010191;1.14e-07;21!UBERON:0004457;2.09e-07;9!UBERON:0000042;2.09e-07;9!UBERON:0000310;5.98e-07;10!UBERON:0002384;9.74e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.35e-13,41;UBERON:0002199,1.98e-11,46;UBERON:0002416,1.98e-11,46;UBERON:0003688,2.59e-11,6;UBERON:0002358,2.59e-11,6;UBERON:0003684,2.59e-11,6;UBERON:0001178,2.59e-11,6;UBERON:0000415,8.09e-10,4;UBERON:0007240,8.09e-10,4;UBERON:0005742,8.09e-10,4;UBERON:0005734,8.09e-10,4;UBERON:0004664,8.09e-10,4;UBERON:0004663,8.09e-10,4;UBERON:0002384,2.93e-09,371;UBERON:0003102,9.03e-09,99;UBERON:0000947,1.06e-07,21;UBERON:0010191,1.06e-07,21;UBERON:0000310,5.86e-07,10|phase1_expression=5.26867299884614,7.92171938396638,2.39622486963151,6.00439790118782,0.893922188854576,2.61701557230111,0,0,0,0,0,0,0,0,0.331397375727916,1.34465029290355,0,0,0,0.246242116153576,0.408001382488506,0,0,0.273748850145768,0.251085279189606,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,2.1686349143074,1.50401373190767,2.60723734129483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,6.46063537203914,2.40597972162702,2.1185468930115,1.43418310374407,1.41867352879343,0,0,0.49333509683432,0.622422070799533,0.269421344139376,0.163461903113459,0.302714855289863,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0.421352420106746,0.204154171254893,0.368502951935304,0.103325781175765,0,1.97813543422845,0,0,0.168336113954066,0.375355559615893,0.277064115484183,1.31693286264251,5.51678032438235,0.901428353439581,0.567160915800105,4.66413052791041,1.2813443329114,1.27159140695737,2.40072876867522,1.33968288009971,5.66809188100384,2.97786970130544,1.85653965465393,3.99491721160914,2.27190396819703,0.828449087780694,1.93975268182574,2.4850671476163,3.82857973265033,1.18692414617341,0,0,0,0,0,0,0,0,0,0,4.5026865673502,0,3.25057549622385,0.721879481669586,0,0.168584690078102,0,0,0.435758888184812,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4008 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |||
|TSSclassifier=S | |||
|UniProt=F8J2B5 | |||
|association_with_transcript=11bp_to_FJ711162_5end | |||
|coexpression_cluster_id=C1189 | |||
|description=CAGE_peak_17_at_LMO7_5end | |||
|id=chr13:76210805..76210826,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.57e-33!180;CL:0000057!2.66e-27!75;CL:0002620!3.85e-12!23;CL:0000048!2.37e-10!430;CL:0000723!4.75e-10!436;CL:0002334!1.25e-09!12;CL:0000034!3.50e-09!444;CL:0000144!3.09e-08!625;CL:0000192!3.27e-07!42;CL:0000514!3.27e-07!42;CL:0000548!4.57e-07!679;CL:0000004!4.57e-07!679;CL:0000255!4.57e-07!679;CL:0000680!6.15e-07!57;CL:0000056!6.15e-07!57;CL:0000355!6.15e-07!57;CL:0000012!8.38e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.33e-17;23!CL:0002334;1.75e-10;12!CL:1000306;8.24e-10;4!CL:0002547;8.24e-10;4!CL:0002580;2.06e-09;3!CL:0002579;4.87e-09;3!CL:0000515;2.95e-08;3!CL:0000057;5.04e-08;73!CL:0002622;1.26e-07;3!CL:0002320;2.48e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.06e-25,76;CL:0002620,8.74e-18,23;CL:0000048,1.48e-10,427;CL:0002334,1.55e-10,12;CL:0000723,3.44e-10,433;CL:1000306,8.09e-10,4;CL:0002547,8.09e-10,4;CL:0000034,1.02e-09,441;CL:0002580,1.96e-09,3;CL:0002579,5.23e-09,3;CL:0000134,1.86e-08,354;CL:0002320,4.85e-08,361;CL:0002622,1.98e-07,3;CL:0000136,2.41e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.25e-12;5!DOID:450;6.25e-12;5!DOID:66;6.25e-12;5!DOID:423;6.25e-12;5!DOID:0080000;6.25e-12;5!DOID:11722;6.25e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.52e-12,5;DOID:450,7.52e-12,5;DOID:66,7.52e-12,5;DOID:423,7.52e-12,5;DOID:0080000,7.52e-12,5;DOID:11722,7.52e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.11e-09!83;UBERON:0002329!1.11e-09!83;UBERON:0003077!1.11e-09!83;UBERON:0003059!1.11e-09!83;UBERON:0007282!1.11e-09!83;UBERON:0009618!1.11e-09!83;UBERON:0007285!1.11e-09!83;UBERON:0002097!1.74e-08!40;UBERON:0002199!2.52e-08!45;UBERON:0002416!2.52e-08!45;UBERON:0003102!1.01e-07!95;UBERON:0003688!2.44e-07!6;UBERON:0002358!2.44e-07!6;UBERON:0003684!2.44e-07!6;UBERON:0001178!2.44e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.29e-11;6!UBERON:0002358;2.29e-11;6!UBERON:0003684;2.29e-11;6!UBERON:0001178;2.29e-11;6!UBERON:0002097;7.93e-10;41!UBERON:0004797;8.24e-10;4!UBERON:0000415;8.24e-10;4!UBERON:0007240;8.24e-10;4!UBERON:0005742;8.24e-10;4!UBERON:0005734;8.24e-10;4!UBERON:0004664;8.24e-10;4!UBERON:0004663;8.24e-10;4!UBERON:0002199;1.87e-08;46!UBERON:0002416;1.87e-08;46!UBERON:0000947;1.14e-07;21!UBERON:0010191;1.14e-07;21!UBERON:0004457;2.09e-07;9!UBERON:0000042;2.09e-07;9!UBERON:0000310;5.98e-07;10!UBERON:0002384;9.74e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.35e-13,41;UBERON:0002199,1.98e-11,46;UBERON:0002416,1.98e-11,46;UBERON:0003688,2.59e-11,6;UBERON:0002358,2.59e-11,6;UBERON:0003684,2.59e-11,6;UBERON:0001178,2.59e-11,6;UBERON:0000415,8.09e-10,4;UBERON:0007240,8.09e-10,4;UBERON:0005742,8.09e-10,4;UBERON:0005734,8.09e-10,4;UBERON:0004664,8.09e-10,4;UBERON:0004663,8.09e-10,4;UBERON:0002384,2.93e-09,371;UBERON:0003102,9.03e-09,99;UBERON:0000947,1.06e-07,21;UBERON:0010191,1.06e-07,21;UBERON:0000310,5.86e-07,10 | |||
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| |||
|short_description=p17@LMO7 | |||
}} |
Revision as of 02:47, 11 September 2013
Short description: | p17@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_LMO7_5end |
Coexpression cluster: | C1189_Preadipocyte_Fibroblast_Ewing_mesodermal_Adipocyte_Smooth_osteoclastoma |
Association with transcript: | 11bp_to_FJ711162_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | F8J2B5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.06e-25 | 76 |
skin fibroblast | 8.74e-18 | 23 |
multi fate stem cell | 1.48e-10 | 427 |
preadipocyte | 1.55e-10 | 12 |
somatic stem cell | 3.44e-10 | 433 |
fibroblast of tunica adventitia of artery | 8.09e-10 | 4 |
fibroblast of the aortic adventitia | 8.09e-10 | 4 |
stem cell | 1.02e-09 | 441 |
preadipocyte of the breast | 1.96e-09 | 3 |
omentum preadipocyte | 5.23e-09 | 3 |
mesenchymal cell | 1.86e-08 | 354 |
connective tissue cell | 4.85e-08 | 361 |
prostate stromal cell | 1.98e-07 | 3 |
fat cell | 2.41e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.35e-13 | 41 |
integument | 1.98e-11 | 46 |
integumental system | 1.98e-11 | 46 |
omentum | 2.59e-11 | 6 |
peritoneum | 2.59e-11 | 6 |
abdominal cavity | 2.59e-11 | 6 |
visceral peritoneum | 2.59e-11 | 6 |
artery wall | 8.09e-10 | 4 |
tunica adventitia of artery | 8.09e-10 | 4 |
adventitia | 8.09e-10 | 4 |
tunica adventitia of blood vessel | 8.09e-10 | 4 |
aorta tunica adventitia | 8.09e-10 | 4 |
aorta wall | 8.09e-10 | 4 |
connective tissue | 2.93e-09 | 371 |
surface structure | 9.03e-09 | 99 |
aorta | 1.06e-07 | 21 |
aortic system | 1.06e-07 | 21 |
breast | 5.86e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.52e-12 | 5 |
myotonic disease | 7.52e-12 | 5 |
muscle tissue disease | 7.52e-12 | 5 |
myopathy | 7.52e-12 | 5 |
muscular disease | 7.52e-12 | 5 |
myotonic dystrophy | 7.52e-12 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.