FFCP PHASE1:Hg19::chr13:100622524..100622543,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C11|description=CAGE_peak_at_chr13:100622524..100622543,-|id=chr13:100622524..100622543,-|ontology_enrichment_celltype=CL:0000064!9.97e-08!3;CL:0005012!9.97e-08!3;CL:0000067!9.97e-08!3;CL:0002304!9.97e-08!3;CL:0000047!1.81e-07!8|ontology_enrichment_celltype_v019=CL:0000333;3.42e-11;5|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;4.20e-147;3|ontology_enrichment_disease=DOID:171!5.26e-08!10;DOID:0050687!9.14e-08!143;DOID:4362!3.12e-07!5|ontology_enrichment_disease_v019=DOID:3193;8.10e-26;2!DOID:962;8.10e-26;2!DOID:1192;1.03e-17;3!DOID:169;1.50e-09;6|ontology_enrichment_disease_v019_2=DOID:3193,9.18e-26,2;DOID:962,9.18e-26,2;DOID:1192,1.12e-17,3;DOID:169,1.57e-09,6|ontology_enrichment_uberon=UBERON:0000073!3.25e-21!94;UBERON:0001016!3.25e-21!94;UBERON:0002346!3.84e-20!90;UBERON:0005743!9.34e-20!86;UBERON:0001017!1.47e-19!82;UBERON:0003075!4.99e-17!86;UBERON:0007284!4.99e-17!86;UBERON:0000924!1.47e-15!173;UBERON:0006601!1.47e-15!173;UBERON:0003076!1.30e-14!15;UBERON:0003057!1.30e-14!15;UBERON:0004121!2.74e-13!169;UBERON:0001049!2.77e-13!57;UBERON:0005068!2.77e-13!57;UBERON:0006241!2.77e-13!57;UBERON:0007135!2.77e-13!57;UBERON:0000955!5.14e-12!69;UBERON:0006238!5.14e-12!69;UBERON:0004733!7.24e-12!12;UBERON:0002028!7.24e-12!12;UBERON:0007277!7.24e-12!12;UBERON:0002616!2.99e-11!59;UBERON:0004732!7.88e-11!13;UBERON:0000033!6.37e-10!123;UBERON:0002298!8.73e-10!8;UBERON:0000488!1.08e-09!4;UBERON:0000153!4.15e-09!129;UBERON:0007811!4.15e-09!129;UBERON:0001896!4.10e-08!3;UBERON:0005290!4.10e-08!3;UBERON:0010096!4.10e-08!3;UBERON:0003056!4.70e-08!61;UBERON:0001778!9.97e-08!3;UBERON:0001775!9.97e-08!3|ontology_enrichment_uberon_v019=UBERON:0002037;2.92e-74;6!UBERON:0002680;6.09e-50;9!UBERON:0001895;6.09e-50;9!UBERON:0004733;9.17e-38;12!UBERON:0002028;9.17e-38;12!UBERON:0004732;5.97e-35;13!UBERON:0003714;8.10e-26;2!UBERON:0000013;3.42e-11;5!UBERON:0002410;3.42e-11;5!UBERON:0001016;2.80e-09;83!UBERON:0000073;7.94e-07;53!UBERON:0002616;7.94e-07;53!UBERON:0000010;8.61e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0002680,5.60e-50,9;UBERON:0001895,5.60e-50,9;UBERON:0010092,5.60e-50,9;UBERON:0004733,8.61e-38,12;UBERON:0002028,8.61e-38,12;UBERON:0007277,8.61e-38,12;UBERON:0004732,5.63e-35,13;UBERON:0003076,1.81e-30,15;UBERON:0003057,1.81e-30,15;UBERON:0003714,9.18e-26,2;UBERON:0000013,3.60e-11,5;UBERON:0002410,3.60e-11,5;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.61e-09,53;UBERON:0002616,3.61e-09,53;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0000955,2.91e-07,68;UBERON:0006238,2.91e-07,68;UBERON:0000010,8.85e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0.709163045303809,0,0,0,0,0.120596438625408,7.62908681585416,6.08185929621735,1.47773809476774,0,0.10893846351899,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0.884612114798832,0.150323419414493,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.19351266257817,0.0730893170861856,0,0,0.441280633457501,0.225980740780532,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0.114536596165916,0,0.432164393964449,0,0,0,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0,0.242998226632099,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_at_chr13:100622524..100622543,- | |||
|id=chr13:100622524..100622543,- | |||
|ontology_enrichment_celltype=CL:0000064!9.97e-08!3;CL:0005012!9.97e-08!3;CL:0000067!9.97e-08!3;CL:0002304!9.97e-08!3;CL:0000047!1.81e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.42e-11;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.20e-147;3 | |||
|ontology_enrichment_disease=DOID:171!5.26e-08!10;DOID:0050687!9.14e-08!143;DOID:4362!3.12e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3193;8.10e-26;2!DOID:962;8.10e-26;2!DOID:1192;1.03e-17;3!DOID:169;1.50e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,9.18e-26,2;DOID:962,9.18e-26,2;DOID:1192,1.12e-17,3;DOID:169,1.57e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.25e-21!94;UBERON:0001016!3.25e-21!94;UBERON:0002346!3.84e-20!90;UBERON:0005743!9.34e-20!86;UBERON:0001017!1.47e-19!82;UBERON:0003075!4.99e-17!86;UBERON:0007284!4.99e-17!86;UBERON:0000924!1.47e-15!173;UBERON:0006601!1.47e-15!173;UBERON:0003076!1.30e-14!15;UBERON:0003057!1.30e-14!15;UBERON:0004121!2.74e-13!169;UBERON:0001049!2.77e-13!57;UBERON:0005068!2.77e-13!57;UBERON:0006241!2.77e-13!57;UBERON:0007135!2.77e-13!57;UBERON:0000955!5.14e-12!69;UBERON:0006238!5.14e-12!69;UBERON:0004733!7.24e-12!12;UBERON:0002028!7.24e-12!12;UBERON:0007277!7.24e-12!12;UBERON:0002616!2.99e-11!59;UBERON:0004732!7.88e-11!13;UBERON:0000033!6.37e-10!123;UBERON:0002298!8.73e-10!8;UBERON:0000488!1.08e-09!4;UBERON:0000153!4.15e-09!129;UBERON:0007811!4.15e-09!129;UBERON:0001896!4.10e-08!3;UBERON:0005290!4.10e-08!3;UBERON:0010096!4.10e-08!3;UBERON:0003056!4.70e-08!61;UBERON:0001778!9.97e-08!3;UBERON:0001775!9.97e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.92e-74;6!UBERON:0002680;6.09e-50;9!UBERON:0001895;6.09e-50;9!UBERON:0004733;9.17e-38;12!UBERON:0002028;9.17e-38;12!UBERON:0004732;5.97e-35;13!UBERON:0003714;8.10e-26;2!UBERON:0000013;3.42e-11;5!UBERON:0002410;3.42e-11;5!UBERON:0001016;2.80e-09;83!UBERON:0000073;7.94e-07;53!UBERON:0002616;7.94e-07;53!UBERON:0000010;8.61e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0002680,5.60e-50,9;UBERON:0001895,5.60e-50,9;UBERON:0010092,5.60e-50,9;UBERON:0004733,8.61e-38,12;UBERON:0002028,8.61e-38,12;UBERON:0007277,8.61e-38,12;UBERON:0004732,5.63e-35,13;UBERON:0003076,1.81e-30,15;UBERON:0003057,1.81e-30,15;UBERON:0003714,9.18e-26,2;UBERON:0000013,3.60e-11,5;UBERON:0002410,3.60e-11,5;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.61e-09,53;UBERON:0002616,3.61e-09,53;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0000955,2.91e-07,68;UBERON:0006238,2.91e-07,68;UBERON:0000010,8.85e-07,8 | |||
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|short_description=p@chr13:100622524..100622543,- | |||
}} |
Revision as of 01:16, 11 September 2013
Short description: | p@chr13:100622524..100622543, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:100622524..100622543, - |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.58e-74 | 6 |
rhombic lip | 2.58e-74 | 6 |
regional part of metencephalon | 5.60e-50 | 9 |
metencephalon | 5.60e-50 | 9 |
future metencephalon | 5.60e-50 | 9 |
segmental subdivision of hindbrain | 8.61e-38 | 12 |
hindbrain | 8.61e-38 | 12 |
presumptive hindbrain | 8.61e-38 | 12 |
segmental subdivision of nervous system | 5.63e-35 | 13 |
posterior neural tube | 1.81e-30 | 15 |
chordal neural plate | 1.81e-30 | 15 |
neural tissue | 9.18e-26 | 2 |
sympathetic nervous system | 3.60e-11 | 5 |
autonomic nervous system | 3.60e-11 | 5 |
nervous system | 1.88e-09 | 89 |
regional part of nervous system | 3.61e-09 | 53 |
regional part of brain | 3.61e-09 | 53 |
neural tube | 9.89e-09 | 56 |
neural rod | 9.89e-09 | 56 |
future spinal cord | 9.89e-09 | 56 |
neural keel | 9.89e-09 | 56 |
brain | 2.91e-07 | 68 |
future brain | 2.91e-07 | 68 |
peripheral nervous system | 8.85e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 9.18e-26 | 2 |
neurofibroma | 9.18e-26 | 2 |
peripheral nervous system neoplasm | 1.12e-17 | 3 |
neuroendocrine tumor | 1.57e-09 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.