FFCP PHASE1:Hg19::chr12:72666262..72666292,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29953|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30748|TSSclassifier=W|UniProt=Q9UKU6|association_with_transcript=-170bp_to_ENST00000261180_5end|description=CAGE_peak_3_at_TRHDE_5end|id=chr12:72666262..72666292,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000136,2.35e-07,15|ontology_enrichment_development_v019=UBERON:0006215;4.42e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060072;8.39e-08;4|ontology_enrichment_disease_v019_2=DOID:0060072,8.92e-08,4|ontology_enrichment_uberon=UBERON:0007023!2.82e-19!115;UBERON:0000475!1.15e-15!365;UBERON:0002346!1.00e-10!90;UBERON:0000481!2.21e-10!347;UBERON:0001049!4.35e-10!57;UBERON:0005068!4.35e-10!57;UBERON:0006241!4.35e-10!57;UBERON:0007135!4.35e-10!57;UBERON:0003075!5.39e-10!86;UBERON:0007284!5.39e-10!86;UBERON:0002619!1.60e-09!22;UBERON:0000073!1.79e-09!94;UBERON:0001016!1.79e-09!94;UBERON:0000924!2.27e-09!173;UBERON:0006601!2.27e-09!173;UBERON:0000956!3.66e-09!25;UBERON:0000203!3.66e-09!25;UBERON:0004121!9.59e-09!169;UBERON:0001893!1.04e-08!34;UBERON:0005743!1.04e-08!86;UBERON:0000468!1.16e-08!659;UBERON:0001869!1.88e-08!32;UBERON:0002020!2.26e-08!34;UBERON:0003528!2.26e-08!34;UBERON:0001950!2.32e-08!20;UBERON:0001017!2.51e-08!82;UBERON:0002791!3.09e-08!33;UBERON:0000153!3.41e-08!129;UBERON:0007811!3.41e-08!129;UBERON:0002616!3.42e-08!59;UBERON:0000033!3.60e-08!123;UBERON:0003056!5.41e-08!61;UBERON:0003080!2.22e-07!42;UBERON:0000955!2.92e-07!69;UBERON:0006238!2.92e-07!69;UBERON:0002780!8.24e-07!41;UBERON:0001890!8.24e-07!41;UBERON:0006240!8.24e-07!41|ontology_enrichment_uberon_v019=UBERON:0002619;5.03e-14;22!UBERON:0001950;2.22e-13;20!UBERON:0000956;6.08e-12;25!UBERON:0000203;6.08e-12;25!UBERON:0000200;3.15e-10;6!UBERON:0001869;1.39e-08;32!UBERON:0001893;3.76e-08;34!UBERON:0002791;1.40e-07;32!UBERON:0003528;8.62e-07;34!UBERON:0002020;8.62e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0002619,2.14e-14,22;UBERON:0001950,8.95e-14,20;UBERON:0000956,2.91e-12,25;UBERON:0000203,2.91e-12,25;UBERON:0007023,2.97e-11,114;UBERON:0000200,1.92e-10,6;UBERON:0001869,4.55e-10,32;UBERON:0001893,2.94e-09,34;UBERON:0002791,7.86e-09,32;UBERON:0003528,4.11e-08,34;UBERON:0002020,4.11e-08,34;UBERON:0000073,2.13e-07,53;UBERON:0002616,2.13e-07,53;UBERON:0002780,4.65e-07,41;UBERON:0001890,4.65e-07,41;UBERON:0003080,4.65e-07,41;UBERON:0006240,4.65e-07,41;UBERON:0002346,6.98e-07,86;UBERON:0001049,9.13e-07,56;UBERON:0005068,9.13e-07,56;UBERON:0006241,9.13e-07,56;UBERON:0007135,9.13e-07,56|phase1_expression=0,1.07050261945492,1.26858963686374,2.00146596706261,0.893922188854576,0,0,0,0.783556884599516,0,0,0,0,0.37129905888014,0.331397375727916,0,0,1.46062018077475,0.487932798790507,0.123121058076788,0.408001382488506,0,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0.221729397462564,0.263504357079378,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0,0.794455084879313,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0.312160076830321,0,0,0,0.161872944368132,0,1.22492502752936,0.737005903870608,1.23990937410919,0,0,0,0,0.841680569770331,0.750711119231785,1.93944880838928,0,0.30648779579902,0,0,0.358779271377724,1.2813443329114,0.211931901159562,0.900273288253207,0.515262646192195,0.257640540045629,1.30281799432113,0.168776332241266,0.0974370051611986,0,1.47279837827679,0.646584227275248,1.06502877754984,0.705264687593482,2.03472710772585,0.57978255948989,0.272746120590835,0.286804595389004,0.243947412259191,0,0.232387885739037,0.207322110030741,0,0,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0.325808305310325,0,0,0,1.05667824812239,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29271715757778,0,0,3.98907174877306,7.28052058379563,0,1.41849132023278,0.799266537048298,0,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,5.70547620162874,0,0.61642896765115,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0.858840442033979,2.00068208423871,0.813795071099207,2.07970861530807,0.178428988797162,0,0.585707074963566,0,0,0,0,0.553107505625109,3.5622281931914,0,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0.256278298511402,0,0.482561763430822,0,1.85051632563187,0.355123450626254,1.56041596426237,2.07701771673448,0.813472649219715,0,0,0,0.918515585316854,2.00300284807389,2.62248829918848,0,0.847168708148562,1.56869953835371,1.46139224653261,0.844413031143006,0,0,0.431831832204279,0,1.35473218771926,0,0.254876273045038,0.831076008928724,0.671624264166535,0.219259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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=29953 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30748 | |||
|TSSclassifier=W | |||
|UniProt=Q9UKU6 | |||
|association_with_transcript=-170bp_to_ENST00000261180_5end | |||
|description=CAGE_peak_3_at_TRHDE_5end | |||
|id=chr12:72666262..72666292,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.35e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.42e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060072;8.39e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,8.92e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.82e-19!115;UBERON:0000475!1.15e-15!365;UBERON:0002346!1.00e-10!90;UBERON:0000481!2.21e-10!347;UBERON:0001049!4.35e-10!57;UBERON:0005068!4.35e-10!57;UBERON:0006241!4.35e-10!57;UBERON:0007135!4.35e-10!57;UBERON:0003075!5.39e-10!86;UBERON:0007284!5.39e-10!86;UBERON:0002619!1.60e-09!22;UBERON:0000073!1.79e-09!94;UBERON:0001016!1.79e-09!94;UBERON:0000924!2.27e-09!173;UBERON:0006601!2.27e-09!173;UBERON:0000956!3.66e-09!25;UBERON:0000203!3.66e-09!25;UBERON:0004121!9.59e-09!169;UBERON:0001893!1.04e-08!34;UBERON:0005743!1.04e-08!86;UBERON:0000468!1.16e-08!659;UBERON:0001869!1.88e-08!32;UBERON:0002020!2.26e-08!34;UBERON:0003528!2.26e-08!34;UBERON:0001950!2.32e-08!20;UBERON:0001017!2.51e-08!82;UBERON:0002791!3.09e-08!33;UBERON:0000153!3.41e-08!129;UBERON:0007811!3.41e-08!129;UBERON:0002616!3.42e-08!59;UBERON:0000033!3.60e-08!123;UBERON:0003056!5.41e-08!61;UBERON:0003080!2.22e-07!42;UBERON:0000955!2.92e-07!69;UBERON:0006238!2.92e-07!69;UBERON:0002780!8.24e-07!41;UBERON:0001890!8.24e-07!41;UBERON:0006240!8.24e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.03e-14;22!UBERON:0001950;2.22e-13;20!UBERON:0000956;6.08e-12;25!UBERON:0000203;6.08e-12;25!UBERON:0000200;3.15e-10;6!UBERON:0001869;1.39e-08;32!UBERON:0001893;3.76e-08;34!UBERON:0002791;1.40e-07;32!UBERON:0003528;8.62e-07;34!UBERON:0002020;8.62e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,2.14e-14,22;UBERON:0001950,8.95e-14,20;UBERON:0000956,2.91e-12,25;UBERON:0000203,2.91e-12,25;UBERON:0007023,2.97e-11,114;UBERON:0000200,1.92e-10,6;UBERON:0001869,4.55e-10,32;UBERON:0001893,2.94e-09,34;UBERON:0002791,7.86e-09,32;UBERON:0003528,4.11e-08,34;UBERON:0002020,4.11e-08,34;UBERON:0000073,2.13e-07,53;UBERON:0002616,2.13e-07,53;UBERON:0002780,4.65e-07,41;UBERON:0001890,4.65e-07,41;UBERON:0003080,4.65e-07,41;UBERON:0006240,4.65e-07,41;UBERON:0002346,6.98e-07,86;UBERON:0001049,9.13e-07,56;UBERON:0005068,9.13e-07,56;UBERON:0006241,9.13e-07,56;UBERON:0007135,9.13e-07,56 | |||
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| |||
|short_description=p3@TRHDE | |||
}} |
Revision as of 00:24, 11 September 2013
Short description: | p3@TRHDE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TRHDE_5end |
Coexpression cluster: | NA |
Association with transcript: | -170bp_to_ENST00000261180_5end |
EntrezGene: | TRHDE |
HGNC: | 30748 |
UniProt: | Q9UKU6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.35e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 2.14e-14 | 22 |
neocortex | 8.95e-14 | 20 |
cerebral cortex | 2.91e-12 | 25 |
pallium | 2.91e-12 | 25 |
adult organism | 2.97e-11 | 114 |
gyrus | 1.92e-10 | 6 |
cerebral hemisphere | 4.55e-10 | 32 |
telencephalon | 2.94e-09 | 34 |
regional part of telencephalon | 7.86e-09 | 32 |
brain grey matter | 4.11e-08 | 34 |
gray matter | 4.11e-08 | 34 |
regional part of nervous system | 2.13e-07 | 53 |
regional part of brain | 2.13e-07 | 53 |
regional part of forebrain | 4.65e-07 | 41 |
forebrain | 4.65e-07 | 41 |
anterior neural tube | 4.65e-07 | 41 |
future forebrain | 4.65e-07 | 41 |
neurectoderm | 6.98e-07 | 86 |
neural tube | 9.13e-07 | 56 |
neural rod | 9.13e-07 | 56 |
future spinal cord | 9.13e-07 | 56 |
neural keel | 9.13e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 8.92e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.