FFCP PHASE1:Hg19::chr12:71003811..71003822,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5787|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9665|TSSclassifier=W|UniProt=P23467,B7ZKS8,F5H3G6|association_with_transcript=-187bp_to_ENST00000261266,NM_001206971,NM_001206972,NM_002837,uc001swb.3,uc010sto.1,uc010stp.1_5end|coexpression_cluster_id=C2237|description=CAGE_peak_9_at_PTPRB_5end|id=chr12:71003811..71003822,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005062;1.39e-10;4!UBERON:0007284;1.39e-10;4!UBERON:0004872;1.93e-09;7!UBERON:0003104;3.03e-09;31!UBERON:0007297;4.50e-09;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.26e-51!115;UBERON:0000477!8.09e-17!286;UBERON:0000025!1.59e-15!194;UBERON:0001049!2.93e-15!57;UBERON:0005068!2.93e-15!57;UBERON:0006241!2.93e-15!57;UBERON:0007135!2.93e-15!57;UBERON:0003075!3.11e-14!86;UBERON:0007284!3.11e-14!86;UBERON:0004111!7.56e-14!241;UBERON:0002346!5.46e-13!90;UBERON:0002616!2.14e-12!59;UBERON:0000955!1.79e-10!69;UBERON:0006238!1.79e-10!69;UBERON:0003080!2.32e-10!42;UBERON:0001017!3.97e-10!82;UBERON:0000073!5.54e-10!94;UBERON:0001016!5.54e-10!94;UBERON:0005743!5.71e-10!86;UBERON:0000483!6.15e-10!309;UBERON:0000119!1.34e-09!312;UBERON:0002780!1.44e-09!41;UBERON:0001890!1.44e-09!41;UBERON:0006240!1.44e-09!41;UBERON:0001893!1.27e-08!34;UBERON:0002020!1.43e-08!34;UBERON:0003528!1.43e-08!34;UBERON:0002298!1.74e-08!8;UBERON:0004872!3.67e-08!84;UBERON:0002791!5.26e-08!33;UBERON:0001869!2.09e-07!32;UBERON:0000481!2.27e-07!347;UBERON:0003056!2.48e-07!61;UBERON:0001981!2.67e-07!60;UBERON:0007500!2.67e-07!60;UBERON:0004537!2.67e-07!60;UBERON:0006965!2.67e-07!60;UBERON:0000055!3.32e-07!69;UBERON:0000468!6.53e-07!659;UBERON:0007100!9.64e-07!27|ontology_enrichment_uberon_v019=UBERON:0003978;5.77e-14;3!UBERON:0000946;5.77e-14;3!UBERON:0002081;5.40e-10;2!UBERON:0002133;7.01e-10;2!UBERON:0007100;7.10e-10;25!UBERON:0007023;2.74e-08;114!UBERON:0004151;6.44e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.14e-24,114;UBERON:0003978,5.96e-14,3;UBERON:0009751,5.96e-14,3;UBERON:0000946,5.96e-14,3;UBERON:0002523,5.96e-14,3;UBERON:0005983,5.96e-14,3;UBERON:0002165,5.96e-14,3;UBERON:0002062,5.96e-14,3;UBERON:0007280,5.96e-14,3;UBERON:0002081,4.77e-10,2;UBERON:0010227,4.77e-10,2;UBERON:0004797,5.89e-10,7;UBERON:0002133,5.93e-10,2;UBERON:0007100,3.38e-09,27;UBERON:0004151,5.94e-07,3|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,1.24430121722827,0,0,0,0,0,0,0,0,0.79504962946682,0,0,2.26123176769604,0,0.275118041940067,0,0.258416759169329,1.06729878806013,0.33472061276467,0.402829317109147,0,0,0,0,0.446498641420399,0.44905874525234,0.675668882899933,0,0,0,0,0,0,0,0,0.397227542439656,0.860509862246441,1.06400514659507,0,0,0,0,0,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0.103052529238439,0,0,0,0.194874010322397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.220587945464788,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,1.26755034821831,0,2.36315962672562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0.352193736052904,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920771839728375,0,0.128139149255701,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,1.23213432070436,1.06461206063404,0,0.37064843820784,0.858749320451947,0,0,0,0,0,0,0,0,0,0.117812402345686,0.404364963146632,1.58510321173008,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0.563391205064483,0,0,0.7133421029625,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0.562677665642051,0.222617410045812,0,0,0.796991953004279,0.552567831062295,0,0,0,0.311039587661807,0.449341755736634,0,0,0.789147245095469,0,0,0.969332746095218,0.278304294485554,0,0,0,2.17499872630438,0,0.254253650292766,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0.591095237907095,1.09692698576986,0,0,0.846452843541768,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0.816164040795739,0,0,2.98578579323551,0.619202951523374,0,0,0,0,0.67401132980677,0,0.23426444572533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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5787 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9665 | |||
|TSSclassifier=W | |||
|UniProt=P23467,B7ZKS8,F5H3G6 | |||
|association_with_transcript=-187bp_to_ENST00000261266,NM_001206971,NM_001206972,NM_002837,uc001swb.3,uc010sto.1,uc010stp.1_5end | |||
|coexpression_cluster_id=C2237 | |||
|description=CAGE_peak_9_at_PTPRB_5end | |||
|id=chr12:71003811..71003822,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.39e-10;4!UBERON:0007284;1.39e-10;4!UBERON:0004872;1.93e-09;7!UBERON:0003104;3.03e-09;31!UBERON:0007297;4.50e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.26e-51!115;UBERON:0000477!8.09e-17!286;UBERON:0000025!1.59e-15!194;UBERON:0001049!2.93e-15!57;UBERON:0005068!2.93e-15!57;UBERON:0006241!2.93e-15!57;UBERON:0007135!2.93e-15!57;UBERON:0003075!3.11e-14!86;UBERON:0007284!3.11e-14!86;UBERON:0004111!7.56e-14!241;UBERON:0002346!5.46e-13!90;UBERON:0002616!2.14e-12!59;UBERON:0000955!1.79e-10!69;UBERON:0006238!1.79e-10!69;UBERON:0003080!2.32e-10!42;UBERON:0001017!3.97e-10!82;UBERON:0000073!5.54e-10!94;UBERON:0001016!5.54e-10!94;UBERON:0005743!5.71e-10!86;UBERON:0000483!6.15e-10!309;UBERON:0000119!1.34e-09!312;UBERON:0002780!1.44e-09!41;UBERON:0001890!1.44e-09!41;UBERON:0006240!1.44e-09!41;UBERON:0001893!1.27e-08!34;UBERON:0002020!1.43e-08!34;UBERON:0003528!1.43e-08!34;UBERON:0002298!1.74e-08!8;UBERON:0004872!3.67e-08!84;UBERON:0002791!5.26e-08!33;UBERON:0001869!2.09e-07!32;UBERON:0000481!2.27e-07!347;UBERON:0003056!2.48e-07!61;UBERON:0001981!2.67e-07!60;UBERON:0007500!2.67e-07!60;UBERON:0004537!2.67e-07!60;UBERON:0006965!2.67e-07!60;UBERON:0000055!3.32e-07!69;UBERON:0000468!6.53e-07!659;UBERON:0007100!9.64e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;5.77e-14;3!UBERON:0000946;5.77e-14;3!UBERON:0002081;5.40e-10;2!UBERON:0002133;7.01e-10;2!UBERON:0007100;7.10e-10;25!UBERON:0007023;2.74e-08;114!UBERON:0004151;6.44e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.14e-24,114;UBERON:0003978,5.96e-14,3;UBERON:0009751,5.96e-14,3;UBERON:0000946,5.96e-14,3;UBERON:0002523,5.96e-14,3;UBERON:0005983,5.96e-14,3;UBERON:0002165,5.96e-14,3;UBERON:0002062,5.96e-14,3;UBERON:0007280,5.96e-14,3;UBERON:0002081,4.77e-10,2;UBERON:0010227,4.77e-10,2;UBERON:0004797,5.89e-10,7;UBERON:0002133,5.93e-10,2;UBERON:0007100,3.38e-09,27;UBERON:0004151,5.94e-07,3 | |||
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|short_description=p9@PTPRB | |||
}} |
Revision as of 00:18, 11 September 2013
Short description: | p9@PTPRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_PTPRB_5end |
Coexpression cluster: | C2237_lung_heart_adipose_breast_left_MCF7_retina |
Association with transcript: | -187bp_to_ENST00000261266, NM_001206971, NM_001206972, NM_002837, uc001swb.3, uc010sto.1, uc010stp.1_5end |
EntrezGene: | PTPRB |
HGNC: | 9665 |
UniProt: | P23467B7ZKS8F5H3G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.14e-24 | 114 |
valve | 5.96e-14 | 3 |
cardiac mesenchyme | 5.96e-14 | 3 |
cardial valve | 5.96e-14 | 3 |
tunica intima | 5.96e-14 | 3 |
heart layer | 5.96e-14 | 3 |
endocardium | 5.96e-14 | 3 |
endocardial cushion | 5.96e-14 | 3 |
presumptive endocardium | 5.96e-14 | 3 |
cardiac atrium | 4.77e-10 | 2 |
future cardiac atrium | 4.77e-10 | 2 |
blood vessel layer | 5.89e-10 | 7 |
atrioventricular valve | 5.93e-10 | 2 |
primary circulatory organ | 3.38e-09 | 27 |
cardiac chamber | 5.94e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.