FFCP PHASE1:Hg19::chr12:49582978..49582985,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7846|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20766|TSSclassifier=S|UniProt=F8VYI2|association_with_transcript=-115bp_to_ENST00000548302_5end|description=CAGE_peak_4_at_TUBA1A_5end|id=chr12:49582978..49582985,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000115,1.57e-07,36;CL:0002139,8.28e-07,24|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.38e-27!115;UBERON:0000025!2.45e-07!194;UBERON:0001049!3.46e-07!57;UBERON:0005068!3.46e-07!57;UBERON:0006241!3.46e-07!57;UBERON:0007135!3.46e-07!57|ontology_enrichment_uberon_v019=UBERON:0007023;3.33e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.09e-28,114;UBERON:0000025,3.20e-08,192;UBERON:0001049,3.59e-08,56;UBERON:0005068,3.59e-08,56;UBERON:0006241,3.59e-08,56;UBERON:0007135,3.59e-08,56;UBERON:0000073,1.24e-07,53;UBERON:0002616,1.24e-07,53|phase1_expression=6.54042165374004,2.78330681058278,3.24195129420734,3.00219895059391,0.893922188854576,3.48935409640147,0,3.79031924056099,2.08948502559871,1.47440361900905,7.6758128476967,5.02415155899396,2.90143676051299,0.990130823680373,0.331397375727916,0,1.20538905604795,0.730310090387373,0.487932798790507,2.58554221961255,2.24400760368678,1.25381888591235,1.14494394852423,0.410623275218653,1.00434111675842,0,0.0821005894499457,0.157421562627358,1.57345710739562,0.767658796194425,1.39334510984468,0,0,0.739508020333575,0.0774672005803016,0,3.52320527201817,0.553995408531877,0.802177789880567,1.08505435357926,3.80656306207871,2.59114932815184,3.34848237924443,0.581592955118259,0.377875943688809,1.4555043671269,0,0.411167888021826,0.309706370895104,0,0,0.709446689665756,0.344745680736619,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0.659702600373432,0.598390972864896,0.852449501065388,0,0,0,0.251248665256743,0,0,0,0,0,1.90129757680748,2.33864729961548,1.88692780957538,4.26848798356681,4.05477610672067,2.4108838004562,3.70516566863623,1.39241674039363,2.19196984517561,5.27988733383968,1.09227722252426,0.889509253863555,1.28019066769952,1.60158394814405,2.29900975981793,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,1.31692042387539,0.590129310341499,1.17903228824749,0.205601498999509,1.5046784585161,1.62961133316795,2.8406868344084,0,0,0,0.664601683750863,1.08321545506006,0.512365278902701,0.260118695119756,1.15106533222573,1.65810010671509,0,2.07601188426885,1.87278579662799,0,0.453237370790265,1.14966148080576,1.71813722741315,0.506039384039006,3.18565414324097,2.60433381542567,0,1.05402583354441,1.91979916731628,1.24930726552346,1.18388626022008,0.821127996921047,0.604820229674197,0,0.434473211648397,0,1.34140171940727,1.79007586580942,4.69870898099936,3.00802746381534,2.89693037921647,2.3858578411533,1.94653948121054,0.850813354476611,0.443458794925128,0.351339142772504,3.1434978119451,0.364295288292542,1.48313777113772,2.92092654289215,1.0447784237956,1.06366368415092,0,0.571994910780128,0,3.18019851786728,1.72046919021225,2.08284300964557,1.69592382577203,2.09749718104953,1.6507082516404,3.55291443112578,1.8089173141853,1.77883131343355,1.33888245105868,2.01414658554573,3.04108842287405,4.39311703586705,4.04429388380456,0,2.14319347881791,0.673588117878509,1.91439516821648,3.06633274931766,6.6448596169769,2.38162267109529,2.63560834872127,0,2.18047026071267,0.993943903390637,1.64619665163954,0.529636723252875,0.860509862246441,0.709336764396714,1.68203280042692,4.2699598291882,0.98667019366864,0,0.538842688278752,2.12500474047496,1.51357427644931,0,0.937285727335186,0.312160076830321,1.71141546463335,1.04614076386261,0.822041490506354,0.485618833104395,0.842704840213491,0.816616685019573,0.737005903870608,0.309977343527296,0,0.741800787835671,0,1.43723628363248,2.35670559535693,0.750711119231785,0.831192346452549,0.877955241761676,1.22595118319608,2.10333282469236,1.92834711372036,0.179389635688862,3.20336083227851,1.48352330811693,0.300091096084402,2.16410311400722,0.515281080091258,2.04728541964749,0.843881661206331,2.14361411354637,1.00973509697646,2.66944706062668,0.646584227275248,0.710019185033229,1.5112814734146,1.86516651541536,0.386521706326594,0.545492241181669,0.286804595389004,3.04934265323988,1.98794652482228,3.02104251460748,1.7622379352613,3.02785021050754,1.09493207722749,4.69348596989448,3.85944562915731,2.76269842704961,3.71494342425583,0.721879481669586,0.354920400119532,0,0.241011029883482,0.330881918197182,0.435758888184812,0,0.269662616320329,0.196221465125346,0,0,0,1.2347220339942,1.47008711385542,0,0,1.18157981336281,0,1.10689594688802,0.686271241194102,0.329250856225877,2.24803506515239,0.502644862058154,0.833296006426766,1.3032332212413,0,0,1.04337364477569,0.939269553886573,3.3204282985047,3.24089858803628,3.04406643575357,0.790204397959275,0,2.70838706696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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7846 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20766 | |||
|TSSclassifier=S | |||
|UniProt=F8VYI2 | |||
|association_with_transcript=-115bp_to_ENST00000548302_5end | |||
|description=CAGE_peak_4_at_TUBA1A_5end | |||
|id=chr12:49582978..49582985,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.57e-07,36;CL:0002139,8.28e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.38e-27!115;UBERON:0000025!2.45e-07!194;UBERON:0001049!3.46e-07!57;UBERON:0005068!3.46e-07!57;UBERON:0006241!3.46e-07!57;UBERON:0007135!3.46e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.33e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.09e-28,114;UBERON:0000025,3.20e-08,192;UBERON:0001049,3.59e-08,56;UBERON:0005068,3.59e-08,56;UBERON:0006241,3.59e-08,56;UBERON:0007135,3.59e-08,56;UBERON:0000073,1.24e-07,53;UBERON:0002616,1.24e-07,53 | |||
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| |||
|short_description=p4@TUBA1A | |||
}} |
Revision as of 22:53, 10 September 2013
Short description: | p4@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TUBA1A_5end |
Coexpression cluster: | NA |
Association with transcript: | -115bp_to_ENST00000548302_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | F8VYI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.57e-07 | 36 |
endothelial cell of vascular tree | 8.28e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.09e-28 | 114 |
tube | 3.20e-08 | 192 |
neural tube | 3.59e-08 | 56 |
neural rod | 3.59e-08 | 56 |
future spinal cord | 3.59e-08 | 56 |
neural keel | 3.59e-08 | 56 |
regional part of nervous system | 1.24e-07 | 53 |
regional part of brain | 1.24e-07 | 53 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.