FFCP PHASE1:Hg19::chr12:30948350..30948375,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100287314|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-239bp_to_ENST00000550292,NR_040245_5end|description=CAGE_peak_3_at_LOC100287314_5end|id=chr12:30948350..30948375,+|ontology_enrichment_celltype=CL:0002321!6.17e-19!248;CL:0000220!6.90e-19!246;CL:0000548!1.44e-14!679;CL:0000004!1.44e-14!679;CL:0000255!1.44e-14!679;CL:0000012!4.14e-14!682;CL:0000066!2.10e-13!254;CL:0000055!2.49e-13!180;CL:0000003!2.75e-10!722;CL:0000359!6.21e-10!32;CL:0000144!6.38e-09!625;CL:0000076!4.12e-08!62;CL:0000222!2.10e-07!119;CL:0000221!6.73e-07!71|ontology_enrichment_celltype_v019=CL:0002595;1.94e-12;5!CL:0002368;5.13e-09;13!CL:0002328;6.42e-09;3!CL:0002202;3.27e-07;9!CL:0002632;3.27e-07;9!CL:0000359;7.12e-07;32|ontology_enrichment_celltype_v019_2=CL:0002595,1.32e-12,5;CL:0002368,5.36e-09,13;CL:0002328,7.49e-09,3;CL:0000066,1.77e-08,253;CL:0002321,2.10e-08,250;CL:0002202,4.34e-07,9;CL:0002632,4.34e-07,9;CL:0000359,4.64e-07,32|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:193!3.58e-07!29|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001637!5.12e-16!42;UBERON:0003509!5.12e-16!42;UBERON:0004572!5.12e-16!42;UBERON:0004573!8.08e-14!33;UBERON:0004571!8.08e-14!33;UBERON:0002049!2.91e-12!79;UBERON:0007798!2.91e-12!79;UBERON:0001981!3.68e-11!60;UBERON:0007500!3.68e-11!60;UBERON:0004537!3.68e-11!60;UBERON:0006965!3.68e-11!60;UBERON:0000055!5.37e-11!69;UBERON:0004872!9.74e-11!84;UBERON:0004535!2.83e-09!110;UBERON:0003914!1.06e-08!118;UBERON:0001009!1.54e-08!113;UBERON:0000486!5.52e-07!82;UBERON:0000947!7.46e-07!21;UBERON:0010191!7.46e-07!21|ontology_enrichment_uberon_v019=UBERON:0003834;1.94e-12;5!UBERON:0001533;1.94e-12;5!UBERON:0001637;5.02e-10;42!UBERON:0003509;5.02e-10;42!UBERON:0004572;5.02e-10;42!UBERON:0004815;6.42e-09;3!UBERON:0002031;6.42e-09;3!UBERON:0003513;9.16e-09;7!UBERON:0004573;1.00e-08;33!UBERON:0004571;1.00e-08;33!UBERON:0007500;4.29e-07;56!UBERON:0001981;4.29e-07;56!UBERON:0004537;4.29e-07;56|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.32e-12,5;UBERON:0001533,1.32e-12,5;UBERON:0001637,1.44e-12,42;UBERON:0003509,1.44e-12,42;UBERON:0004572,1.44e-12,42;UBERON:0007500,3.85e-10,59;UBERON:0001981,3.85e-10,59;UBERON:0004537,3.85e-10,59;UBERON:0006965,3.85e-10,59;UBERON:0004573,1.42e-09,33;UBERON:0004571,1.42e-09,33;UBERON:0003513,7.02e-09,7;UBERON:0004815,7.49e-09,3;UBERON:0002031,7.49e-09,3;UBERON:0000055,3.48e-08,68;UBERON:0002049,2.22e-07,78;UBERON:0007798,2.22e-07,78|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0.872338524100369,0,1.26343974685366,0,0,2.09340350391728,0.655324116390517,0.791300934685361,0,0.331397375727916,0,0.602694528023977,0,0.975865597581014,0.984968464614303,2.44800829493104,0.940364164434263,0.286235987131057,0.410623275218653,0.251085279189606,0,0,0,0,0,0,4.59710612239464,3.31326510656075,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604820229674197,0,0,0,0,0.383587685530591,0,0.50133791063589,0,0,0.486634870302636,0.0945348171640679,1.10864698731282,0.43917392846563,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.347140501607594,1.13061588384802,2.51699661725944,0,1.8809546988313,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0,0.367663080345869,4.0507097394088,0.17859945656816,0,0,1.53316637465883,4.74632829784064,0,0,0,0,0.496971951695318,1.2663051166458,1.32409180813219,0.573673241497627,0.354668382198357,0.560677600142307,0,0.24666754841716,0.311211035399766,0.67355336034844,0.817309515567294,0.302714855289863,0.576175924479999,0,0.936480230490962,0.570471821544449,0,0.23486899728753,0.809364721840658,0.280901613404497,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0,0.125118519871964,0.554128230968366,0,0,0.150238058906597,0.226864366320042,0.89694817844431,0.427114777637135,0.635795703478686,3.30100205692843,0.206105058476878,0.772921620136887,0,0.843881661206331,0.194874010322397,1.51460264546469,0.184099797284599,0,0.710019185033229,0.10075209822764,0.169560592310488,0.193260853163297,0,1.14721838155602,0.487894824518382,0,0.232387885739037,0.310983165046111,0.756962552626885,0,1.56449532329816,0,1.38134921352481,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.219500570817251,1.1240175325762,0.100528972411631,0.277765335475589,0,0,0,0.463721619900307,0.352226082707465,0.288732895522148,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.53735113621709,0.290633938513962,1.91691339582606,0,0,0,0.864719720501769,0,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,1.3321108950805,0,0,0.823240336780769,0,0,2.37585561880029,1.20575750823834,0,1.29964888536674,0,0,0,0.239624855491583,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100287314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-239bp_to_ENST00000550292,NR_040245_5end | |||
|description=CAGE_peak_3_at_LOC100287314_5end | |||
|id=chr12:30948350..30948375,+ | |||
|ontology_enrichment_celltype=CL:0002321!6.17e-19!248;CL:0000220!6.90e-19!246;CL:0000548!1.44e-14!679;CL:0000004!1.44e-14!679;CL:0000255!1.44e-14!679;CL:0000012!4.14e-14!682;CL:0000066!2.10e-13!254;CL:0000055!2.49e-13!180;CL:0000003!2.75e-10!722;CL:0000359!6.21e-10!32;CL:0000144!6.38e-09!625;CL:0000076!4.12e-08!62;CL:0000222!2.10e-07!119;CL:0000221!6.73e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002595;1.94e-12;5!CL:0002368;5.13e-09;13!CL:0002328;6.42e-09;3!CL:0002202;3.27e-07;9!CL:0002632;3.27e-07;9!CL:0000359;7.12e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,1.32e-12,5;CL:0002368,5.36e-09,13;CL:0002328,7.49e-09,3;CL:0000066,1.77e-08,253;CL:0002321,2.10e-08,250;CL:0002202,4.34e-07,9;CL:0002632,4.34e-07,9;CL:0000359,4.64e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!3.58e-07!29 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!5.12e-16!42;UBERON:0003509!5.12e-16!42;UBERON:0004572!5.12e-16!42;UBERON:0004573!8.08e-14!33;UBERON:0004571!8.08e-14!33;UBERON:0002049!2.91e-12!79;UBERON:0007798!2.91e-12!79;UBERON:0001981!3.68e-11!60;UBERON:0007500!3.68e-11!60;UBERON:0004537!3.68e-11!60;UBERON:0006965!3.68e-11!60;UBERON:0000055!5.37e-11!69;UBERON:0004872!9.74e-11!84;UBERON:0004535!2.83e-09!110;UBERON:0003914!1.06e-08!118;UBERON:0001009!1.54e-08!113;UBERON:0000486!5.52e-07!82;UBERON:0000947!7.46e-07!21;UBERON:0010191!7.46e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;1.94e-12;5!UBERON:0001533;1.94e-12;5!UBERON:0001637;5.02e-10;42!UBERON:0003509;5.02e-10;42!UBERON:0004572;5.02e-10;42!UBERON:0004815;6.42e-09;3!UBERON:0002031;6.42e-09;3!UBERON:0003513;9.16e-09;7!UBERON:0004573;1.00e-08;33!UBERON:0004571;1.00e-08;33!UBERON:0007500;4.29e-07;56!UBERON:0001981;4.29e-07;56!UBERON:0004537;4.29e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.32e-12,5;UBERON:0001533,1.32e-12,5;UBERON:0001637,1.44e-12,42;UBERON:0003509,1.44e-12,42;UBERON:0004572,1.44e-12,42;UBERON:0007500,3.85e-10,59;UBERON:0001981,3.85e-10,59;UBERON:0004537,3.85e-10,59;UBERON:0006965,3.85e-10,59;UBERON:0004573,1.42e-09,33;UBERON:0004571,1.42e-09,33;UBERON:0003513,7.02e-09,7;UBERON:0004815,7.49e-09,3;UBERON:0002031,7.49e-09,3;UBERON:0000055,3.48e-08,68;UBERON:0002049,2.22e-07,78;UBERON:0007798,2.22e-07,78 | |||
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| |||
|short_description=p3@LOC100287314 | |||
}} |
Revision as of 22:25, 10 September 2013
Short description: | p3@LOC100287314 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LOC100287314_5end |
Coexpression cluster: | NA |
Association with transcript: | -239bp_to_ENST00000550292, NR_040245_5end |
EntrezGene: | LOC100287314 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 1.32e-12 | 5 |
respiratory epithelial cell | 5.36e-09 | 13 |
bronchial epithelial cell | 7.49e-09 | 3 |
epithelial cell | 1.77e-08 | 253 |
embryonic cell | 2.10e-08 | 250 |
epithelial cell of tracheobronchial tree | 4.34e-07 | 9 |
epithelial cell of lower respiratory tract | 4.34e-07 | 9 |
vascular associated smooth muscle cell | 4.64e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 1.32e-12 | 5 |
subclavian artery | 1.32e-12 | 5 |
artery | 1.44e-12 | 42 |
arterial blood vessel | 1.44e-12 | 42 |
arterial system | 1.44e-12 | 42 |
epithelial tube open at both ends | 3.85e-10 | 59 |
blood vessel | 3.85e-10 | 59 |
blood vasculature | 3.85e-10 | 59 |
vascular cord | 3.85e-10 | 59 |
systemic artery | 1.42e-09 | 33 |
systemic arterial system | 1.42e-09 | 33 |
trunk blood vessel | 7.02e-09 | 7 |
lower respiratory tract epithelium | 7.49e-09 | 3 |
epithelium of bronchus | 7.49e-09 | 3 |
vessel | 3.48e-08 | 68 |
vasculature | 2.22e-07 | 78 |
vascular system | 2.22e-07 | 78 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.