FFCP PHASE1:Hg19::chr12:13250508..13250515,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C82|description=CAGE_peak_at_chr12:13250508..13250515,+|id=chr12:13250508..13250515,+|ontology_enrichment_celltype=CL:0002057!4.28e-103!42;CL:0000860!1.67e-95!45;CL:0002009!3.20e-79!65;CL:0002194!4.06e-78!63;CL:0000576!4.06e-78!63;CL:0000040!4.06e-78!63;CL:0000559!4.06e-78!63;CL:0000766!3.20e-77!76;CL:0000557!1.20e-71!71;CL:0000839!2.77e-69!70;CL:0000738!7.79e-60!140;CL:0002087!1.15e-58!119;CL:0002031!2.08e-53!124;CL:0000763!3.87e-51!112;CL:0000049!3.87e-51!112;CL:0000037!2.85e-48!172;CL:0000566!2.85e-48!172;CL:0000988!6.95e-45!182;CL:0002032!8.03e-45!165;CL:0000837!8.03e-45!165;CL:0002393!1.81e-27!9;CL:0002397!1.81e-27!9;CL:0000134!6.36e-19!358;CL:0002320!2.72e-18!365;CL:0000219!4.59e-16!390;CL:0000048!5.65e-15!430;CL:0000034!7.22e-15!444;CL:0000723!1.43e-14!436;CL:0000767!8.23e-11!3;CL:0000875!1.65e-10!3;CL:0002396!1.65e-10!3;CL:0000063!5.00e-08!578;CL:0002371!1.87e-07!591;CL:0000144!8.05e-07!625|ontology_enrichment_celltype_v019=CL:0000860;1.27e-55;33!CL:0002057;1.27e-55;33!CL:0000576;5.21e-50;48!CL:0000473;3.12e-36;39!CL:0000234;3.12e-36;39!CL:0000766;1.36e-34;69!CL:0000767;2.31e-19;3!CL:0000875;7.56e-19;3!CL:0002396;7.56e-19;3!CL:0002393;1.85e-16;6!CL:0002397;1.85e-16;6!CL:0000763;4.17e-15;100!CL:0002087;1.04e-14;104!CL:0000738;3.95e-10;136!CL:0000094;1.49e-07;8!CL:0000988;1.54e-07;177!CL:0000037;4.08e-07;1!CL:0001024;4.08e-07;1|ontology_enrichment_celltype_v019_2=CL:0000860,3.03e-90,42;CL:0002057,3.03e-90,42;CL:0000473,2.45e-78,48;CL:0000234,2.45e-78,48;CL:0000766,3.09e-63,72;CL:0002194,1.17e-61,59;CL:0000576,1.17e-61,59;CL:0000040,1.17e-61,59;CL:0000559,1.17e-61,59;CL:0002009,1.66e-59,61;CL:0000839,1.10e-54,66;CL:0000557,8.32e-54,67;CL:0000738,1.66e-41,136;CL:0000763,1.46e-40,108;CL:0000049,1.46e-40,108;CL:0002087,2.89e-40,115;CL:0002031,1.20e-35,120;CL:0000037,7.25e-35,168;CL:0000988,8.18e-33,177;CL:0002393,2.40e-32,9;CL:0002397,2.40e-32,9;CL:0002032,6.08e-32,161;CL:0000837,6.08e-32,161;CL:0000767,2.25e-19,3;CL:0000875,8.57e-19,3;CL:0002396,8.57e-19,3;CL:0000134,1.60e-13,354;CL:0002320,3.81e-13,361;CL:0000219,8.20e-12,386;CL:0000048,3.52e-10,427;CL:0000723,5.91e-10,433;CL:0000034,1.16e-09,441;CL:0000094,1.48e-07,8;CL:0001024,4.89e-07,1|ontology_enrichment_development_v019=CL:0002057;1.64e-61;42!CL:0000049;3.13e-13;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.21e-65!80;UBERON:0001474!2.67e-60!86;UBERON:0002390!1.08e-56!102;UBERON:0003061!1.08e-56!102;UBERON:0002193!2.45e-55!112;UBERON:0004765!1.07e-49!101;UBERON:0001434!1.07e-49!101;UBERON:0002405!7.09e-49!115;UBERON:0002204!1.38e-25!167;UBERON:0003081!1.06e-21!216;UBERON:0002384!1.98e-17!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.37e-51,76;UBERON:0001474,9.41e-47,82;UBERON:0004765,3.51e-42,90;UBERON:0002390,1.95e-41,98;UBERON:0003061,1.95e-41,98;UBERON:0002405,1.15e-40,93;UBERON:0001434,1.75e-37,100;UBERON:0002193,3.83e-37,108;UBERON:0002204,2.07e-20,167;UBERON:0003081,2.64e-17,203;UBERON:0002384,1.25e-12,371;UBERON:0000926,3.34e-09,315;UBERON:0004120,3.34e-09,315;UBERON:0006603,3.34e-09,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.50709987588466,3.45446458287491,2.78669021968937,0,0,0,0,0,1.46800219667424,0.553995408531877,0.802177789880567,1.73608696572681,0.223915474239924,0,0.257575567634187,0.290796477559129,0.755751887377619,0.485168122375632,1.62700325833979,0.411167888021826,0.929119112685311,1.43846196161075,1.7931249457037,3.78371567821736,1.37898272294647,0.645484683583826,1.35426486594342,0.564727018627814,0,0.224723484445085,2.75475503133812,1.92557416245656,0.639337125799041,0.989553900560148,0.997318288108159,1.27867425159808,0,1.70215567407342,0,3.01498398308092,2.60741459210101,6.29847649644838,1.81619850790011,1.47311054395026,1.89877432464531,2.95757400836718,2.97646019951061,4.61249020118427,1.90958672949042,1.35159203557356,1.6072558669708,4.27519115611873,2.18808344918999,1.64397738388171,1.75996244461323,0.546138611262131,0,1.70692089026603,0,0,0,0,1.1384259382189,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C82 | |||
|description=CAGE_peak_at_chr12:13250508..13250515,+ | |||
|id=chr12:13250508..13250515,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.28e-103!42;CL:0000860!1.67e-95!45;CL:0002009!3.20e-79!65;CL:0002194!4.06e-78!63;CL:0000576!4.06e-78!63;CL:0000040!4.06e-78!63;CL:0000559!4.06e-78!63;CL:0000766!3.20e-77!76;CL:0000557!1.20e-71!71;CL:0000839!2.77e-69!70;CL:0000738!7.79e-60!140;CL:0002087!1.15e-58!119;CL:0002031!2.08e-53!124;CL:0000763!3.87e-51!112;CL:0000049!3.87e-51!112;CL:0000037!2.85e-48!172;CL:0000566!2.85e-48!172;CL:0000988!6.95e-45!182;CL:0002032!8.03e-45!165;CL:0000837!8.03e-45!165;CL:0002393!1.81e-27!9;CL:0002397!1.81e-27!9;CL:0000134!6.36e-19!358;CL:0002320!2.72e-18!365;CL:0000219!4.59e-16!390;CL:0000048!5.65e-15!430;CL:0000034!7.22e-15!444;CL:0000723!1.43e-14!436;CL:0000767!8.23e-11!3;CL:0000875!1.65e-10!3;CL:0002396!1.65e-10!3;CL:0000063!5.00e-08!578;CL:0002371!1.87e-07!591;CL:0000144!8.05e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-55;33!CL:0002057;1.27e-55;33!CL:0000576;5.21e-50;48!CL:0000473;3.12e-36;39!CL:0000234;3.12e-36;39!CL:0000766;1.36e-34;69!CL:0000767;2.31e-19;3!CL:0000875;7.56e-19;3!CL:0002396;7.56e-19;3!CL:0002393;1.85e-16;6!CL:0002397;1.85e-16;6!CL:0000763;4.17e-15;100!CL:0002087;1.04e-14;104!CL:0000738;3.95e-10;136!CL:0000094;1.49e-07;8!CL:0000988;1.54e-07;177!CL:0000037;4.08e-07;1!CL:0001024;4.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.03e-90,42;CL:0002057,3.03e-90,42;CL:0000473,2.45e-78,48;CL:0000234,2.45e-78,48;CL:0000766,3.09e-63,72;CL:0002194,1.17e-61,59;CL:0000576,1.17e-61,59;CL:0000040,1.17e-61,59;CL:0000559,1.17e-61,59;CL:0002009,1.66e-59,61;CL:0000839,1.10e-54,66;CL:0000557,8.32e-54,67;CL:0000738,1.66e-41,136;CL:0000763,1.46e-40,108;CL:0000049,1.46e-40,108;CL:0002087,2.89e-40,115;CL:0002031,1.20e-35,120;CL:0000037,7.25e-35,168;CL:0000988,8.18e-33,177;CL:0002393,2.40e-32,9;CL:0002397,2.40e-32,9;CL:0002032,6.08e-32,161;CL:0000837,6.08e-32,161;CL:0000767,2.25e-19,3;CL:0000875,8.57e-19,3;CL:0002396,8.57e-19,3;CL:0000134,1.60e-13,354;CL:0002320,3.81e-13,361;CL:0000219,8.20e-12,386;CL:0000048,3.52e-10,427;CL:0000723,5.91e-10,433;CL:0000034,1.16e-09,441;CL:0000094,1.48e-07,8;CL:0001024,4.89e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;1.64e-61;42!CL:0000049;3.13e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.21e-65!80;UBERON:0001474!2.67e-60!86;UBERON:0002390!1.08e-56!102;UBERON:0003061!1.08e-56!102;UBERON:0002193!2.45e-55!112;UBERON:0004765!1.07e-49!101;UBERON:0001434!1.07e-49!101;UBERON:0002405!7.09e-49!115;UBERON:0002204!1.38e-25!167;UBERON:0003081!1.06e-21!216;UBERON:0002384!1.98e-17!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.37e-51,76;UBERON:0001474,9.41e-47,82;UBERON:0004765,3.51e-42,90;UBERON:0002390,1.95e-41,98;UBERON:0003061,1.95e-41,98;UBERON:0002405,1.15e-40,93;UBERON:0001434,1.75e-37,100;UBERON:0002193,3.83e-37,108;UBERON:0002204,2.07e-20,167;UBERON:0003081,2.64e-17,203;UBERON:0002384,1.25e-12,371;UBERON:0000926,3.34e-09,315;UBERON:0004120,3.34e-09,315;UBERON:0006603,3.34e-09,315 | |||
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|short_description=p@chr12:13250508..13250515,+ | |||
}} |
Revision as of 21:47, 10 September 2013
Short description: | p@chr12:13250508..13250515, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:13250508..13250515, + |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.37e-51 | 76 |
bone element | 9.41e-47 | 82 |
skeletal element | 3.51e-42 | 90 |
hematopoietic system | 1.95e-41 | 98 |
blood island | 1.95e-41 | 98 |
immune system | 1.15e-40 | 93 |
skeletal system | 1.75e-37 | 100 |
hemolymphoid system | 3.83e-37 | 108 |
musculoskeletal system | 2.07e-20 | 167 |
lateral plate mesoderm | 2.64e-17 | 203 |
connective tissue | 1.25e-12 | 371 |
mesoderm | 3.34e-09 | 315 |
mesoderm-derived structure | 3.34e-09 | 315 |
presumptive mesoderm | 3.34e-09 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.