FFCP PHASE1:Hg19::chr11:66139068..66139120,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3177|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11004|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000541567,uc009yrf.2,uc010rpb.1_5end|coexpression_cluster_id=C3192|description=CAGE_peak_2_at_SLC29A2_5end|id=chr11:66139068..66139120,-|ontology_enrichment_celltype=CL:0000066!1.86e-30!254;CL:0002076!5.49e-15!43;CL:0000223!1.13e-10!59;CL:0000082!5.10e-08!19;CL:0002368!1.25e-07!13;CL:0000039!2.48e-07!7;CL:0000586!2.48e-07!7;CL:0002251!2.96e-07!21|ontology_enrichment_celltype_v019=CL:0002076;1.35e-17;42!CL:0002368;3.12e-11;13!CL:0000039;1.14e-10;7!CL:0000586;1.14e-10;7!CL:0002251;1.67e-09;20!CL:0000082;5.71e-09;19!CL:0002202;4.90e-08;9!CL:0002632;4.90e-08;9!CL:1000507;1.14e-07;10!CL:1000494;1.14e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,3.45e-40,253;CL:0002076,7.32e-23,42;CL:0000223,1.64e-16,58;CL:0002368,1.56e-11,13;CL:0000039,1.05e-10,7;CL:0000586,1.05e-10,7;CL:0002251,1.62e-09,20;CL:0000082,4.14e-09,19;CL:0002202,2.96e-08,9;CL:0002632,2.96e-08,9;CL:1000507,8.48e-08,10;CL:1000494,8.48e-08,10|ontology_enrichment_development_v019=UBERON:0008947;1.43e-09;29!CL:0000223;5.95e-09;58|ontology_enrichment_disease=DOID:305!2.02e-35!106;DOID:0050687!1.37e-27!143;DOID:162!2.79e-19!235;DOID:14566!5.28e-18!239;DOID:299!3.85e-11!25;DOID:1749!7.38e-09!14;DOID:0050686!5.77e-07!137|ontology_enrichment_disease_v019=DOID:299;8.99e-16;25!DOID:305;6.63e-14;106!DOID:1749;3.57e-12;14!DOID:0050687;2.51e-07;143!DOID:5093;3.41e-07;4!DOID:1612;3.41e-07;4!DOID:0050615;5.67e-07;16|ontology_enrichment_disease_v019_2=DOID:305,1.26e-42,106;DOID:0050687,2.52e-33,143;DOID:162,1.47e-19,235;DOID:14566,1.24e-18,239;DOID:299,1.22e-15,25;DOID:1749,3.10e-12,14;DOID:5093,3.43e-07,4;DOID:1612,3.43e-07,4;DOID:0050615,5.50e-07,16|ontology_enrichment_uberon=UBERON:0004119!3.74e-19!169;UBERON:0000925!3.74e-19!169;UBERON:0006595!3.74e-19!169;UBERON:0001007!5.68e-16!155;UBERON:0001555!5.68e-16!155;UBERON:0007026!5.68e-16!155;UBERON:0004921!1.30e-15!129;UBERON:0004185!1.30e-15!129;UBERON:0001004!3.53e-15!72;UBERON:0000065!6.61e-14!53;UBERON:0008947!2.05e-13!38;UBERON:0003258!2.05e-13!38;UBERON:0000077!3.87e-13!130;UBERON:0000072!1.01e-11!46;UBERON:0000464!1.09e-11!104;UBERON:0005153!1.15e-10!37;UBERON:0001041!1.24e-10!98;UBERON:0000064!2.60e-10!219;UBERON:0000063!7.40e-10!97;UBERON:0005181!1.51e-09!35;UBERON:0005178!4.62e-09!34;UBERON:0002224!4.62e-09!34;UBERON:0005157!4.87e-09!51;UBERON:0000466!1.46e-08!126;UBERON:0005409!1.64e-08!35;UBERON:0005177!1.68e-08!107;UBERON:0002048!3.64e-08!22;UBERON:0000117!3.64e-08!22;UBERON:0000171!3.64e-08!22;UBERON:0000170!3.64e-08!22;UBERON:0005597!3.64e-08!22;UBERON:0000118!3.64e-08!22;UBERON:0004802!5.10e-08!19;UBERON:0000115!5.10e-08!19;UBERON:0005911!7.80e-08!82;UBERON:0000344!3.78e-07!12;UBERON:0000915!4.61e-07!52;UBERON:0004807!7.75e-07!28|ontology_enrichment_uberon_v019=UBERON:0000065;5.10e-12;44!UBERON:0000072;2.69e-11;37!UBERON:0005911;2.93e-10;36!UBERON:0004807;1.24e-09;22!UBERON:0004802;5.71e-09;19!UBERON:0000115;5.71e-09;19!UBERON:0002048;1.60e-08;22!UBERON:0000117;1.60e-08;22!UBERON:0000171;1.60e-08;22!UBERON:0000170;1.60e-08;22!UBERON:0005409;4.72e-08;22!UBERON:0004211;1.14e-07;10!UBERON:0009773;1.14e-07;10!UBERON:0001231;1.14e-07;10!UBERON:0004810;1.14e-07;10!UBERON:0005181;1.45e-07;35!UBERON:0001004;1.67e-07;65!UBERON:0005178;4.56e-07;34!UBERON:0002224;4.56e-07;34!UBERON:0002294;5.29e-07;7!UBERON:0001173;5.29e-07;7!UBERON:0006554;5.77e-07;30!UBERON:0001008;5.77e-07;30!UBERON:0001737;6.40e-07;9!UBERON:0001557;6.40e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.36e-17,160;UBERON:0000925,2.36e-17,160;UBERON:0006595,2.36e-17,160;UBERON:0001007,4.71e-14,145;UBERON:0001555,4.71e-14,145;UBERON:0007026,4.71e-14,145;UBERON:0008947,6.90e-14,38;UBERON:0003258,6.90e-14,38;UBERON:0001004,1.92e-12,74;UBERON:0004921,2.13e-12,118;UBERON:0000065,2.41e-12,54;UBERON:0005153,2.64e-11,37;UBERON:0000072,5.32e-10,47;UBERON:0005911,7.41e-10,82;UBERON:0005157,1.26e-09,47;UBERON:0004802,4.14e-09,19;UBERON:0000115,4.14e-09,19;UBERON:0005177,1.29e-08,101;UBERON:0002048,1.30e-08,22;UBERON:0000117,1.30e-08,22;UBERON:0000171,1.30e-08,22;UBERON:0000170,1.30e-08,22;UBERON:0005597,1.30e-08,22;UBERON:0000118,1.30e-08,22;UBERON:0005181,1.49e-08,35;UBERON:0006554,3.67e-08,47;UBERON:0005178,6.48e-08,34;UBERON:0002224,6.48e-08,34;UBERON:0001008,7.25e-08,48;UBERON:0004810,8.48e-08,10;UBERON:0009569,1.16e-07,112;UBERON:0000915,1.48e-07,52;UBERON:0001041,6.73e-07,87;UBERON:0001737,7.58e-07,9;UBERON:0004807,8.00e-07,28|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.96587149201207,34.8900583986214,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0.0787107813136792,0,0,0,1.83884244895785,3.0120591877825,4.43704812200145,1.08454080812422,1.27952309238679,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1967097701138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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3177 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000541567,uc009yrf.2,uc010rpb.1_5end | |||
|coexpression_cluster_id=C3192 | |||
|description=CAGE_peak_2_at_SLC29A2_5end | |||
|id=chr11:66139068..66139120,- | |||
|ontology_enrichment_celltype=CL:0000066!1.86e-30!254;CL:0002076!5.49e-15!43;CL:0000223!1.13e-10!59;CL:0000082!5.10e-08!19;CL:0002368!1.25e-07!13;CL:0000039!2.48e-07!7;CL:0000586!2.48e-07!7;CL:0002251!2.96e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.35e-17;42!CL:0002368;3.12e-11;13!CL:0000039;1.14e-10;7!CL:0000586;1.14e-10;7!CL:0002251;1.67e-09;20!CL:0000082;5.71e-09;19!CL:0002202;4.90e-08;9!CL:0002632;4.90e-08;9!CL:1000507;1.14e-07;10!CL:1000494;1.14e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.45e-40,253;CL:0002076,7.32e-23,42;CL:0000223,1.64e-16,58;CL:0002368,1.56e-11,13;CL:0000039,1.05e-10,7;CL:0000586,1.05e-10,7;CL:0002251,1.62e-09,20;CL:0000082,4.14e-09,19;CL:0002202,2.96e-08,9;CL:0002632,2.96e-08,9;CL:1000507,8.48e-08,10;CL:1000494,8.48e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.43e-09;29!CL:0000223;5.95e-09;58 | |||
|ontology_enrichment_disease=DOID:305!2.02e-35!106;DOID:0050687!1.37e-27!143;DOID:162!2.79e-19!235;DOID:14566!5.28e-18!239;DOID:299!3.85e-11!25;DOID:1749!7.38e-09!14;DOID:0050686!5.77e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:299;8.99e-16;25!DOID:305;6.63e-14;106!DOID:1749;3.57e-12;14!DOID:0050687;2.51e-07;143!DOID:5093;3.41e-07;4!DOID:1612;3.41e-07;4!DOID:0050615;5.67e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.26e-42,106;DOID:0050687,2.52e-33,143;DOID:162,1.47e-19,235;DOID:14566,1.24e-18,239;DOID:299,1.22e-15,25;DOID:1749,3.10e-12,14;DOID:5093,3.43e-07,4;DOID:1612,3.43e-07,4;DOID:0050615,5.50e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.74e-19!169;UBERON:0000925!3.74e-19!169;UBERON:0006595!3.74e-19!169;UBERON:0001007!5.68e-16!155;UBERON:0001555!5.68e-16!155;UBERON:0007026!5.68e-16!155;UBERON:0004921!1.30e-15!129;UBERON:0004185!1.30e-15!129;UBERON:0001004!3.53e-15!72;UBERON:0000065!6.61e-14!53;UBERON:0008947!2.05e-13!38;UBERON:0003258!2.05e-13!38;UBERON:0000077!3.87e-13!130;UBERON:0000072!1.01e-11!46;UBERON:0000464!1.09e-11!104;UBERON:0005153!1.15e-10!37;UBERON:0001041!1.24e-10!98;UBERON:0000064!2.60e-10!219;UBERON:0000063!7.40e-10!97;UBERON:0005181!1.51e-09!35;UBERON:0005178!4.62e-09!34;UBERON:0002224!4.62e-09!34;UBERON:0005157!4.87e-09!51;UBERON:0000466!1.46e-08!126;UBERON:0005409!1.64e-08!35;UBERON:0005177!1.68e-08!107;UBERON:0002048!3.64e-08!22;UBERON:0000117!3.64e-08!22;UBERON:0000171!3.64e-08!22;UBERON:0000170!3.64e-08!22;UBERON:0005597!3.64e-08!22;UBERON:0000118!3.64e-08!22;UBERON:0004802!5.10e-08!19;UBERON:0000115!5.10e-08!19;UBERON:0005911!7.80e-08!82;UBERON:0000344!3.78e-07!12;UBERON:0000915!4.61e-07!52;UBERON:0004807!7.75e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;5.10e-12;44!UBERON:0000072;2.69e-11;37!UBERON:0005911;2.93e-10;36!UBERON:0004807;1.24e-09;22!UBERON:0004802;5.71e-09;19!UBERON:0000115;5.71e-09;19!UBERON:0002048;1.60e-08;22!UBERON:0000117;1.60e-08;22!UBERON:0000171;1.60e-08;22!UBERON:0000170;1.60e-08;22!UBERON:0005409;4.72e-08;22!UBERON:0004211;1.14e-07;10!UBERON:0009773;1.14e-07;10!UBERON:0001231;1.14e-07;10!UBERON:0004810;1.14e-07;10!UBERON:0005181;1.45e-07;35!UBERON:0001004;1.67e-07;65!UBERON:0005178;4.56e-07;34!UBERON:0002224;4.56e-07;34!UBERON:0002294;5.29e-07;7!UBERON:0001173;5.29e-07;7!UBERON:0006554;5.77e-07;30!UBERON:0001008;5.77e-07;30!UBERON:0001737;6.40e-07;9!UBERON:0001557;6.40e-07;9 | |||
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| |||
|short_description=p2@SLC29A2 | |||
}} |
Revision as of 19:08, 10 September 2013
Short description: | p2@SLC29A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SLC29A2_5end |
Coexpression cluster: | C3192_choriocarcinoma_rectal_breast_pancreatic_adenocarcinoma_Alveolar_Renal |
Association with transcript: | 0bp_to_ENST00000541567, uc009yrf.2, uc010rpb.1_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.45e-40 | 253 |
endo-epithelial cell | 7.32e-23 | 42 |
endodermal cell | 1.64e-16 | 58 |
respiratory epithelial cell | 1.56e-11 | 13 |
germ line cell | 1.05e-10 | 7 |
germ cell | 1.05e-10 | 7 |
epithelial cell of alimentary canal | 1.62e-09 | 20 |
epithelial cell of lung | 4.14e-09 | 19 |
epithelial cell of tracheobronchial tree | 2.96e-08 | 9 |
epithelial cell of lower respiratory tract | 2.96e-08 | 9 |
kidney tubule cell | 8.48e-08 | 10 |
nephron tubule epithelial cell | 8.48e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.26e-42 | 106 |
cell type cancer | 2.52e-33 | 143 |
cancer | 1.47e-19 | 235 |
disease of cellular proliferation | 1.24e-18 | 239 |
adenocarcinoma | 1.22e-15 | 25 |
squamous cell carcinoma | 3.10e-12 | 14 |
thoracic cancer | 3.43e-07 | 4 |
breast cancer | 3.43e-07 | 4 |
respiratory system cancer | 5.50e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.