FFCP PHASE1:Hg19::chr11:60719607..60719659,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51296|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18068|TSSclassifier=W|UniProt=Q8IY34|association_with_transcript=-350bp_to_ENST00000227880,NM_016582,NR_027391,uc001nqn.2,uc001nqo.2_5end|coexpression_cluster_id=C2141|description=CAGE_peak_1_at_SLC15A3_5end|id=chr11:60719607..60719659,-|ontology_enrichment_celltype=CL:0000766!8.17e-34!76;CL:0000738!1.50e-30!140;CL:0002194!2.45e-27!63;CL:0000576!2.45e-27!63;CL:0000040!2.45e-27!63;CL:0000559!2.45e-27!63;CL:0000839!9.04e-27!70;CL:0000557!7.33e-26!71;CL:0002009!2.15e-25!65;CL:0002087!5.46e-24!119;CL:0002057!2.63e-22!42;CL:0002031!4.38e-21!124;CL:0000037!5.03e-21!172;CL:0000566!5.03e-21!172;CL:0000763!5.82e-20!112;CL:0000049!5.82e-20!112;CL:0002032!1.31e-19!165;CL:0000837!1.31e-19!165;CL:0000860!4.33e-19!45;CL:0000988!4.54e-18!182;CL:0000134!5.71e-07!358|ontology_enrichment_celltype_v019=CL:0000473;8.36e-23;39!CL:0000234;8.36e-23;39!CL:0000860;1.56e-21;33!CL:0002057;1.56e-21;33!CL:0000576;6.90e-21;48!CL:0000766;1.70e-19;69!CL:0000738;6.50e-10;136!CL:0002087;1.15e-09;104!CL:0000763;1.59e-09;100!CL:0000094;6.63e-08;8!CL:0000235;4.85e-07;6!CL:0000945;9.95e-07;24|ontology_enrichment_celltype_v019_2=CL:0000766,3.81e-48,72;CL:0000738,9.31e-43,136;CL:0002194,1.16e-39,59;CL:0000576,1.16e-39,59;CL:0000040,1.16e-39,59;CL:0000559,1.16e-39,59;CL:0000839,3.29e-39,66;CL:0000557,3.28e-38,67;CL:0002009,1.66e-37,61;CL:0000473,4.88e-34,48;CL:0000234,4.88e-34,48;CL:0002087,2.96e-33,115;CL:0000037,5.75e-33,168;CL:0000763,2.02e-32,108;CL:0000049,2.02e-32,108;CL:0002032,1.40e-30,161;CL:0000837,1.40e-30,161;CL:0002031,3.74e-30,120;CL:0000988,3.78e-29,177;CL:0000860,1.75e-28,42;CL:0002057,1.75e-28,42;CL:0000094,6.51e-08,8;CL:0000235,4.96e-07,6;CL:0000945,9.31e-07,24;CL:0000826,9.31e-07,24|ontology_enrichment_development_v019=CL:0002057;8.22e-21;42!CL:0000049;5.35e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.44e-34!115;UBERON:0002390!1.49e-28!102;UBERON:0003061!1.49e-28!102;UBERON:0002193!2.05e-26!112;UBERON:0002371!1.66e-22!80;UBERON:0001474!2.08e-18!86;UBERON:0002405!1.22e-16!115;UBERON:0004765!2.16e-15!101;UBERON:0001434!2.16e-15!101;UBERON:0003081!6.59e-14!216;UBERON:0002204!1.56e-11!167;UBERON:0000479!6.23e-08!787;UBERON:0001049!6.07e-07!57;UBERON:0005068!6.07e-07!57;UBERON:0006241!6.07e-07!57;UBERON:0007135!6.07e-07!57|ontology_enrichment_uberon_v019=UBERON:0007023;1.37e-10;114!UBERON:0000178;3.82e-08;15!UBERON:0000179;3.82e-08;15!UBERON:0000463;3.82e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.95e-42,98;UBERON:0003061,9.95e-42,98;UBERON:0007023,1.45e-41,114;UBERON:0002193,2.86e-38,108;UBERON:0002371,2.46e-32,76;UBERON:0002405,7.51e-31,93;UBERON:0001474,5.35e-28,82;UBERON:0004765,3.37e-23,90;UBERON:0001434,2.42e-21,100;UBERON:0003081,1.15e-16,203;UBERON:0000479,5.36e-11,773;UBERON:0002204,6.35e-11,167;UBERON:0000178,3.86e-08,15;UBERON:0000179,3.86e-08,15;UBERON:0000463,3.86e-08,15;UBERON:0000926,7.35e-08,315;UBERON:0004120,7.35e-08,315;UBERON:0006603,7.35e-08,315;UBERON:0001049,3.74e-07,56;UBERON:0005068,3.74e-07,56;UBERON:0006241,3.74e-07,56;UBERON:0007135,3.74e-07,56|phase1_expression=0,0,0.986680828671798,1.0007329835313,2.68176656656373,0.872338524100369,0,0,1.82829939739887,0.245733936501509,0,0.436882744260345,0.263766978228454,0,0,0,0,1.46062018077475,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.273748850145768,0,16.6581224530534,15.8454137638395,14.482783761717,10.2274711980715,7.67658796194425,16.1008768248719,0,0.30120591877825,0,3.87336002901508,1.13735385989937,0,83.0993112797816,76.0063455911837,87.2383700277724,93.1488372838085,56.0336042212835,83.7120594811106,26.6078776966603,20.4053009591957,7.03493777444667,32.5400651667958,27.9594163854842,13.9367866902797,33.3723175093695,12.808035326455,3.54723344832878,36.5430421580816,19.3645405075148,18.9597081232078,26.9186545545925,15.8285567033551,4.26974620445661,36.1178992997665,12.8371610830437,15.344091019177,23.7492936134436,8.37747362010854,7.2458207590558,45.2726412260591,31.7735725827038,6.85104473895132,17.8386552332288,19.2948679815475,7.38442071997397,24.2159801053348,16.2042159834528,3.79754864929061,4.01385043992689,6.59073329891635,2.72556239160889,4.04383072127382,11.7137976416375,5.46466994770072,6.84030584978997,4.17725022118089,2.19196984517561,3.51992488922645,7.64594055766984,7.11607403090844,5.54749289336459,9.20910770182829,0.574752439954483,5.2883589822789,1.90810750907073,1.1384259382189,2.34894875748376,4.96955196562797,0,7.28661131875997,0.526768169550154,0.393419540227666,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0.651083453856419,0,1.05402583354441,1.02389288923535,1.24930726552346,1.4206635122641,0,0.403213486449465,0,0.289648807765598,12.1903433156981,1.34140171940727,0.511450247374121,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.1756695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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51296 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18068 | |||
|TSSclassifier=W | |||
|UniProt=Q8IY34 | |||
|association_with_transcript=-350bp_to_ENST00000227880,NM_016582,NR_027391,uc001nqn.2,uc001nqo.2_5end | |||
|coexpression_cluster_id=C2141 | |||
|description=CAGE_peak_1_at_SLC15A3_5end | |||
|id=chr11:60719607..60719659,- | |||
|ontology_enrichment_celltype=CL:0000766!8.17e-34!76;CL:0000738!1.50e-30!140;CL:0002194!2.45e-27!63;CL:0000576!2.45e-27!63;CL:0000040!2.45e-27!63;CL:0000559!2.45e-27!63;CL:0000839!9.04e-27!70;CL:0000557!7.33e-26!71;CL:0002009!2.15e-25!65;CL:0002087!5.46e-24!119;CL:0002057!2.63e-22!42;CL:0002031!4.38e-21!124;CL:0000037!5.03e-21!172;CL:0000566!5.03e-21!172;CL:0000763!5.82e-20!112;CL:0000049!5.82e-20!112;CL:0002032!1.31e-19!165;CL:0000837!1.31e-19!165;CL:0000860!4.33e-19!45;CL:0000988!4.54e-18!182;CL:0000134!5.71e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.36e-23;39!CL:0000234;8.36e-23;39!CL:0000860;1.56e-21;33!CL:0002057;1.56e-21;33!CL:0000576;6.90e-21;48!CL:0000766;1.70e-19;69!CL:0000738;6.50e-10;136!CL:0002087;1.15e-09;104!CL:0000763;1.59e-09;100!CL:0000094;6.63e-08;8!CL:0000235;4.85e-07;6!CL:0000945;9.95e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.81e-48,72;CL:0000738,9.31e-43,136;CL:0002194,1.16e-39,59;CL:0000576,1.16e-39,59;CL:0000040,1.16e-39,59;CL:0000559,1.16e-39,59;CL:0000839,3.29e-39,66;CL:0000557,3.28e-38,67;CL:0002009,1.66e-37,61;CL:0000473,4.88e-34,48;CL:0000234,4.88e-34,48;CL:0002087,2.96e-33,115;CL:0000037,5.75e-33,168;CL:0000763,2.02e-32,108;CL:0000049,2.02e-32,108;CL:0002032,1.40e-30,161;CL:0000837,1.40e-30,161;CL:0002031,3.74e-30,120;CL:0000988,3.78e-29,177;CL:0000860,1.75e-28,42;CL:0002057,1.75e-28,42;CL:0000094,6.51e-08,8;CL:0000235,4.96e-07,6;CL:0000945,9.31e-07,24;CL:0000826,9.31e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;8.22e-21;42!CL:0000049;5.35e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.44e-34!115;UBERON:0002390!1.49e-28!102;UBERON:0003061!1.49e-28!102;UBERON:0002193!2.05e-26!112;UBERON:0002371!1.66e-22!80;UBERON:0001474!2.08e-18!86;UBERON:0002405!1.22e-16!115;UBERON:0004765!2.16e-15!101;UBERON:0001434!2.16e-15!101;UBERON:0003081!6.59e-14!216;UBERON:0002204!1.56e-11!167;UBERON:0000479!6.23e-08!787;UBERON:0001049!6.07e-07!57;UBERON:0005068!6.07e-07!57;UBERON:0006241!6.07e-07!57;UBERON:0007135!6.07e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.37e-10;114!UBERON:0000178;3.82e-08;15!UBERON:0000179;3.82e-08;15!UBERON:0000463;3.82e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.95e-42,98;UBERON:0003061,9.95e-42,98;UBERON:0007023,1.45e-41,114;UBERON:0002193,2.86e-38,108;UBERON:0002371,2.46e-32,76;UBERON:0002405,7.51e-31,93;UBERON:0001474,5.35e-28,82;UBERON:0004765,3.37e-23,90;UBERON:0001434,2.42e-21,100;UBERON:0003081,1.15e-16,203;UBERON:0000479,5.36e-11,773;UBERON:0002204,6.35e-11,167;UBERON:0000178,3.86e-08,15;UBERON:0000179,3.86e-08,15;UBERON:0000463,3.86e-08,15;UBERON:0000926,7.35e-08,315;UBERON:0004120,7.35e-08,315;UBERON:0006603,7.35e-08,315;UBERON:0001049,3.74e-07,56;UBERON:0005068,3.74e-07,56;UBERON:0006241,3.74e-07,56;UBERON:0007135,3.74e-07,56 | |||
|phase1_expression=0,0,0.986680828671798,1.0007329835313,2.68176656656373,0.872338524100369,0,0,1.82829939739887,0.245733936501509,0,0.436882744260345,0.263766978228454,0,0,0,0,1.46062018077475,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.273748850145768,0,16.6581224530534,15.8454137638395,14.482783761717,10.2274711980715,7.67658796194425,16.1008768248719,0,0.30120591877825,0,3.87336002901508,1.13735385989937,0,83.0993112797816,76.0063455911837,87.2383700277724,93.1488372838085,56.0336042212835,83.7120594811106,26.6078776966603,20.4053009591957,7.03493777444667,32.5400651667958,27.9594163854842,13.9367866902797,33.3723175093695,12.808035326455,3.54723344832878,36.5430421580816,19.3645405075148,18.9597081232078,26.9186545545925,15.8285567033551,4.26974620445661,36.1178992997665,12.8371610830437,15.344091019177,23.7492936134436,8.37747362010854,7.2458207590558,45.2726412260591,31.7735725827038,6.85104473895132,17.8386552332288,19.2948679815475,7.38442071997397,24.2159801053348,16.2042159834528,3.79754864929061,4.01385043992689,6.59073329891635,2.72556239160889,4.04383072127382,11.7137976416375,5.46466994770072,6.84030584978997,4.17725022118089,2.19196984517561,3.51992488922645,7.64594055766984,7.11607403090844,5.54749289336459,9.20910770182829,0.574752439954483,5.2883589822789,1.90810750907073,1.1384259382189,2.34894875748376,4.96955196562797,0,7.28661131875997,0.526768169550154,0.393419540227666,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0.651083453856419,0,1.05402583354441,1.02389288923535,1.24930726552346,1.4206635122641,0,0.403213486449465,0,0.289648807765598,12.1903433156981,1.34140171940727,0.511450247374121,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,10.8712632663101,0,0.370784442784429,48.0330142608931,50.149364342189,69.6699713118853,32.9117061541372,14.2998727695032,10.4008100372278,0,0,0.347140501607594,0,0.419499436209906,0.825354125820202,0.417989933073621,0,0.35576626268671,0,0.805658634218294,0,0.488124115096339,0,0.81014194788176,0.446498641420399,0.22452937262617,0.225222960966644,0,0,0.183201743930407,19.7670626154095,38.7780264148325,0,0.496971951695318,0.633152558322899,0.397227542439656,2.0078563452417,2.4826786753885,0,0,0.24666754841716,0,0.538842688278752,0.163461903113459,0.302714855289863,0.576175924479999,0,0,0,0.448346041655403,0,0,0.140450806702248,0,0,0.413303124703062,4.75201142912821,2.22540236350701,0,1.43723628363248,0.168336113954066,0,0.277064115484183,0.877955241761676,0,2.85452311922534,0.113432183160021,0.358779271377724,1.06778694409284,0.635795703478686,0.300091096084402,0.412210116953756,0.257640540045629,0.18611685633159,1.0126579934476,0.584622030967192,1.51460264546469,0.644349290496095,0.80823028409406,1.06502877754984,0,0.508681776931463,0,0,0,1.34171076742555,0.265059536642971,0.580969714347592,0.829288440122964,0.756962552626885,0,6.25798129319264,1.92972281457866,0,0.464367928031979,3.60939740834793,0,0,0,0,0,0,0,0,0,0.738155454624648,4.20725321410337,0,0,0,1.96565443335525,4.13552934676983,0,0,0,0,0,0.100528972411631,0,0.651616610620649,0,1.44331342025273,0,0,0.433099343283221,0,0.190254152234598,0,0,125.570673104573,54.9910023077209,100.326034544892,0,0.16798212819886,0.425325291727159,0,0,0,3.4486426652716,3.52193736052904,3.7319060797339,5.33243827642757,2.27236380167484,0.063497894292169,0,0,0,0,0.300343057843917,0,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,7.15312891703765,0,0.797814349754612,0,0.514414748524284,0,0,0.714889968290738,0.542621605391443,0,0.325736184293735,1.06617584622764,0,0.602878754119172,0.871533458600294,0.299918973546171,69.3255549654786,63.7866506118801,31.6250909224547,0.479249710983165,0,2.85273810081437,0.434343920002738,1.64381058040307,0.358121926479791,0,4.53170748464433,0.862510299438069,3.59360501583295,0,0,0,1.17261385734044,0.637938751653163,128.080201094968,86.7568231691672,109.405695547113,0.49076596687656,0,0,0.415941723061614,0.356857977594324,1.26161932027148,0.937131319941706,0.902838299183157,0,0,0,0,0.347534457872331,0.587403472388222,0,27.9136835265898,40.7699839547186,21.6656942340992,0,0,0.30239029332968,0.248107807818777,0,0,0.896974044789907,0.511707249066704,0.321707842287215,2.96836132889982,0.925258162815933,0.177561725313127,0.9033987161519,0.519254429183621,0.232420756919918,0.120859449591622,0,0,0.34444334449382,0.364182336013434,0.524497659837696,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0.831076008928724,0,0,0,0.256450125116389,0,0,13.7044545491471,0,0,0,0,0,0.193341436584244,0.154048617114644,0,0.275673144969061,0.214840489736547,0.580066775656914,0.340906509664404,0,0,0,0,0,0.464845549297286,0.62962469366128,0.6970372701606,3.69640296211307,0,0.869932992075073,0.37064843820784,0,0,0.316379424718726,0.571890581771475,0.511795582622668,0,1.27281299170375,0,0.179872457583315,1.37268514868027,0.117812402345686,0.808729926293264,0,0,0.48763373908959,3.65570234446927,0,0.545999645631943,0.42421629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| |||
|short_description=p1@SLC15A3 | |||
}} |
Revision as of 18:20, 10 September 2013
Short description: | p1@SLC15A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLC15A3_5end |
Coexpression cluster: | C2141_Neutrophils_Macrophage_CD14_Monocytederived_Eosinophils_Dendritic_CD14CD16 |
Association with transcript: | -350bp_to_ENST00000227880, NM_016582, NR_027391, uc001nqn.2, uc001nqo.2_5end |
EntrezGene: | SLC15A3 |
HGNC: | 18068 |
UniProt: | Q8IY34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.81e-48 | 72 |
leukocyte | 9.31e-43 | 136 |
monopoietic cell | 1.16e-39 | 59 |
monocyte | 1.16e-39 | 59 |
monoblast | 1.16e-39 | 59 |
promonocyte | 1.16e-39 | 59 |
myeloid lineage restricted progenitor cell | 3.29e-39 | 66 |
granulocyte monocyte progenitor cell | 3.28e-38 | 67 |
macrophage dendritic cell progenitor | 1.66e-37 | 61 |
defensive cell | 4.88e-34 | 48 |
phagocyte | 4.88e-34 | 48 |
nongranular leukocyte | 2.96e-33 | 115 |
hematopoietic stem cell | 5.75e-33 | 168 |
myeloid cell | 2.02e-32 | 108 |
common myeloid progenitor | 2.02e-32 | 108 |
hematopoietic oligopotent progenitor cell | 1.40e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-30 | 161 |
hematopoietic lineage restricted progenitor cell | 3.74e-30 | 120 |
hematopoietic cell | 3.78e-29 | 177 |
classical monocyte | 1.75e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.75e-28 | 42 |
granulocyte | 6.51e-08 | 8 |
macrophage | 4.96e-07 | 6 |
lymphocyte of B lineage | 9.31e-07 | 24 |
pro-B cell | 9.31e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.95e-42 | 98 |
blood island | 9.95e-42 | 98 |
adult organism | 1.45e-41 | 114 |
hemolymphoid system | 2.86e-38 | 108 |
bone marrow | 2.46e-32 | 76 |
immune system | 7.51e-31 | 93 |
bone element | 5.35e-28 | 82 |
skeletal element | 3.37e-23 | 90 |
skeletal system | 2.42e-21 | 100 |
lateral plate mesoderm | 1.15e-16 | 203 |
tissue | 5.36e-11 | 773 |
musculoskeletal system | 6.35e-11 | 167 |
blood | 3.86e-08 | 15 |
haemolymphatic fluid | 3.86e-08 | 15 |
organism substance | 3.86e-08 | 15 |
mesoderm | 7.35e-08 | 315 |
mesoderm-derived structure | 7.35e-08 | 315 |
presumptive mesoderm | 7.35e-08 | 315 |
neural tube | 3.74e-07 | 56 |
neural rod | 3.74e-07 | 56 |
future spinal cord | 3.74e-07 | 56 |
neural keel | 3.74e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.