FFCP PHASE1:Hg19::chr11:27721994..27722008,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=627 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |||
|TSSclassifier=S | |||
|UniProt=P23560 | |||
|association_with_transcript=26bp_to_ENST00000356660,ENST00000418212,ENST00000533246,NM_001143813,NM_001143814,NM_001709,uc001mru.2,uc009yjd.2,uc010rdw.1_5end | |||
|coexpression_cluster_id=C1629 | |||
|description=CAGE_peak_1_at_BDNF_5end | |||
|id=chr11:27721994..27722008,- | |||
|ontology_enrichment_celltype=CL:0000055!7.61e-44!180;CL:0000057!4.47e-20!75;CL:0000192!1.27e-18!42;CL:0000514!1.27e-18!42;CL:0000680!7.25e-18!57;CL:0000056!7.25e-18!57;CL:0000355!7.25e-18!57;CL:0000187!8.24e-18!54;CL:0000393!1.69e-17!60;CL:0000211!1.69e-17!60;CL:0000222!3.82e-17!119;CL:0000183!1.37e-16!59;CL:0000359!1.76e-15!32;CL:0000220!7.17e-14!246;CL:0002321!1.34e-13!248;CL:0000548!4.31e-09!679;CL:0000004!4.31e-09!679;CL:0000255!4.31e-09!679;CL:0000012!1.08e-08!682;CL:0000077!4.52e-08!19;CL:0002620!5.39e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.90e-17;32!CL:0000192;6.45e-15;43!CL:0000187;1.75e-10;55!CL:0000057;5.52e-09;73!CL:0000393;8.62e-09;61!CL:0000211;8.62e-09;61!CL:0000077;3.22e-08;19!CL:0002620;6.39e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.72e-22,76;CL:0000192,1.10e-20,43;CL:0000514,1.10e-20,43;CL:0000187,1.49e-19,55;CL:0000680,3.59e-19,58;CL:0000056,3.59e-19,58;CL:0000355,3.59e-19,58;CL:0000393,2.19e-18,61;CL:0000211,2.19e-18,61;CL:0000359,8.20e-18,32;CL:0000222,1.11e-16,121;CL:0002321,6.91e-11,250;CL:0000077,3.27e-08,19;CL:0002620,6.06e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;6.45e-15;43!CL:0000355;4.84e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.82e-19!83;UBERON:0002329!3.82e-19!83;UBERON:0003077!3.82e-19!83;UBERON:0003059!3.82e-19!83;UBERON:0007282!3.82e-19!83;UBERON:0009618!3.82e-19!83;UBERON:0007285!3.82e-19!83;UBERON:0005256!3.56e-18!143;UBERON:0004290!2.28e-17!70;UBERON:0001134!3.50e-17!61;UBERON:0002036!3.50e-17!61;UBERON:0003082!3.50e-17!61;UBERON:0002385!4.85e-17!63;UBERON:0001015!4.85e-17!63;UBERON:0000383!4.85e-17!63;UBERON:0000486!5.35e-15!82;UBERON:0002100!2.31e-13!216;UBERON:0000490!5.61e-13!138;UBERON:0000475!1.04e-12!365;UBERON:0001637!1.08e-12!42;UBERON:0003509!1.08e-12!42;UBERON:0004572!1.08e-12!42;UBERON:0000481!4.82e-12!347;UBERON:0002049!3.17e-11!79;UBERON:0007798!3.17e-11!79;UBERON:0003914!4.96e-11!118;UBERON:0004872!1.48e-10!84;UBERON:0004573!1.57e-10!33;UBERON:0004571!1.57e-10!33;UBERON:0003104!3.22e-10!238;UBERON:0009142!3.22e-10!238;UBERON:0000483!6.20e-10!309;UBERON:0001981!6.31e-10!60;UBERON:0007500!6.31e-10!60;UBERON:0004537!6.31e-10!60;UBERON:0006965!6.31e-10!60;UBERON:0000119!6.49e-10!312;UBERON:0001009!1.41e-08!113;UBERON:0004535!1.42e-08!110;UBERON:0000468!9.95e-08!659;UBERON:0000055!1.09e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.08e-10;33!UBERON:0004571;1.08e-10;33!UBERON:0001637;6.91e-10;42!UBERON:0003509;6.91e-10;42!UBERON:0004572;6.91e-10;42!UBERON:0001135;4.25e-07;15!UBERON:0002384;4.76e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.73e-18,71;UBERON:0003059,1.73e-18,71;UBERON:0007282,1.73e-18,71;UBERON:0004290,1.73e-18,71;UBERON:0009618,1.73e-18,71;UBERON:0007524,2.13e-18,73;UBERON:0001134,3.96e-18,62;UBERON:0002036,3.96e-18,62;UBERON:0003082,3.96e-18,62;UBERON:0003077,6.68e-18,72;UBERON:0007285,6.68e-18,72;UBERON:0002385,8.33e-18,64;UBERON:0001015,8.33e-18,64;UBERON:0000383,8.33e-18,64;UBERON:0007503,1.17e-17,78;UBERON:0000486,4.71e-16,83;UBERON:0005256,1.67e-15,122;UBERON:0003104,1.16e-14,160;UBERON:0009142,1.16e-14,160;UBERON:0001637,3.49e-14,42;UBERON:0003509,3.49e-14,42;UBERON:0004572,3.49e-14,42;UBERON:0000490,2.71e-13,148;UBERON:0002100,1.18e-12,199;UBERON:0004573,4.60e-12,33;UBERON:0004571,4.60e-12,33;UBERON:0003914,3.62e-11,117;UBERON:0004872,5.62e-10,83;UBERON:0002049,1.27e-09,78;UBERON:0007798,1.27e-09,78;UBERON:0007500,6.59e-09,59;UBERON:0001981,6.59e-09,59;UBERON:0004537,6.59e-09,59;UBERON:0006965,6.59e-09,59;UBERON:0000483,2.10e-08,306;UBERON:0004535,2.48e-08,109;UBERON:0000119,3.64e-08,309;UBERON:0001009,5.83e-08,112;UBERON:0001135,4.10e-07,15 | |||
|phase1_expression=4.90531624030503,3.8538094300377,5.92008497203079,13.009528785907,4.46961094427288,13.0850778615055,0,0,0,9.58362352355885,4.18680700783456,0.655324116390517,2.90143676051299,1.98026164736075,0.994192127183747,2.6893005858071,2.41077811209591,4.38186054232424,6.34312638427659,0.984968464614303,9.9960338709684,0.940364164434263,1.71741592278634,2.32686522623903,7.53255837568817,0,0.0821005894499457,0.236132343941038,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,3.58015173161885,9.39741796199872,12.0321098552613,20.7130522113978,0,8.27279279514481,13.991152940282,27.4944452853579,47.1672799172087,0.130979075497713,0,0,0,0,0,0,0,0,0,0.860234595106124,0,1.13061588384802,0.419499436209906,1.6507082516404,1.25396979922086,0,0,0,0,0.760272105718513,0.24406205754817,0,6.48113558305408,0.892997282840798,0.44905874525234,1.23872628531654,0,0,0.366403487860815,0,0,0.436094052142534,12.9212707440783,16.58859702806,22.1123331958075,22.3732564184075,13.1227301413392,12.8955848032731,16.0123493594557,25.4067574869675,0.933633106199299,7.67850830797222,3.92308567472301,1.36221684880438,0.576175924479999,7.0296429550139,0,0,0.298897361103602,5.28455243896942,1.45685649931318,1.82586048712923,9.1869377064702,9.33540811569437,7.54278202583088,36.8280885757437,54.3987244412825,1.82032272387605,0.718618141816238,2.35670559535693,1.87677779807946,4.98715407871529,19.7539929396377,38.9239500664755,79.7764092794029,12.3641079644423,23.1412630038632,14.7354598284812,7.62954844174423,28.5086541280182,9.68693774841326,16.7466351029659,13.4004136558745,13.5021065793013,14.225802753535,17.670364197088,10.3095886479375,10.1837015795851,31.2408441414621,25.8932892445035,21.195074038811,0,0,0.573609190778008,0.853815942907168,0,0.813357600086629,0.932949495138334,1.00928340350251,0,21.9029345261742,33.44852878603,26.2456350569713,4.17931135228781,2.16563844500876,3.54920400119532,2.52877035117153,2.16909926895134,3.52940712743661,2.61455332910887,1.66089433377768,0.943819157121151,1.37355025587742,0,0,4.20725321410337,9.0546282492908,7.3504355692771,0,0,0,0,0,7.89211927373218,0,0,0,0.0925884451585296,10.1000574646201,12.4792174233549,23.0930147240437,0.811512834825538,28.4129040050688,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0.234004265139238,0,1.87467667973554,0.335964256397719,0.567100388969546,0,0,0,0,0,0,0,0,0,0.763976851116555,0,3.4214489204541,6.88944201112268,0.300343057843917,0.285826432630578,0.224262168690721,1.30788020649984,0.36669142910475,20.0371159424556,0,0,6.64845291462176,5.2003718455683,1.80045161983499,12.766421882095,5.06202140130589,19.5879851311662,15.1934049509604,19.7577680827385,0,23.455868617008,12.6712299669349,10.8518175741451,26.1460037580088,40.8889533934613,0,0,0,8.14724508671381,0,2.85273810081437,8.25253448005201,0.61642896765115,1.61154866915906,0,0,0,0,1.52456774533478,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0.613457458595699,8.00272833695483,7.5954206635926,3.32753378449291,4.46072471992904,8.83133524190034,4.68565659970853,4.51419149591578,6.82222512167955,10.3473071292505,9.96338397803155,29.4990669666725,13.0325421702124,0.195801157462741,0,0,0,0,0,1.66435439510497,2.11673205330776,3.47350930946288,6.44540287809862,8.70046292742528,8.45718385087626,11.7692667285342,18.015639168084,8.90508398669946,1.85051632563187,3.55123450626254,4.35273926873188,4.15403543346897,5.57809816607804,0.604297247958111,2.20557117333613,0.184161977871793,32.2628599342545,18.5732991366851,20.1931599037513,2.25599806453706,1.61732207919271,3.92174884588428,0,1.58327443339314,0,0.340187410553031,6.0456456508599,0,3.79325012561394,3.01013864312912,3.82314409567557,2.49322802678617,11.6414872455533,0.219259876645935,0,7.43705362837529,15.7447029935859,10.737487023922,0.618246069886334,14.92582276539,9.57110199078821,0.574265537996172,0,14.4615536859744,6.67027956215642,2.31072925671967,0.767518373630648,1.65403886981437,2.68550612170684,2.0302337147992,2.47157219506693,1.4245125703478,0,0.960950336825531,0.382838137483752,0.10115778085555,26.9610418592426,44.0737285562896,37.6400125886724,9.24100740528266,11.1784266366575,28.7077887384774,19.0883945677038,23.7587311991705,3.34942532423701,16.4517300853737,33.3602839366693,6.65334257409468,1.28381696410176,5.40945521474092,9.41938368239076,14.3897966066652,20.5902772302041,34.6368462896318,19.0051532678917,20.6063417524911,10.5314614059745,9.75267478179181,30.4641862039106,17.9605249486484,6.27899592476734,26.7256266392517,3.39024349860728,23.7087097724833,29.8547538858549,32.8838163940322,4.6302042741335,3.9353685122798,21.5084999580466,18.2795863878853,14.3664757291443,4.7325746227337,24.6605092942934,22.4702762433188,0.709522128141196,22.1663017062547,2.63435914367922,6.07157078025144,29.04458178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81884806909,0,0,0,0.805095174364105,0 | |||
|short_description=p1@BDNF | |||
}} |
Revision as of 17:21, 10 September 2013
Short description: | p1@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 26bp_to_ENST00000356660, ENST00000418212, ENST00000533246, NM_001143813, NM_001143814, NM_001709, uc001mru.2, uc009yjd.2, uc010rdw.1_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.72e-22 | 76 |
smooth muscle cell | 1.10e-20 | 43 |
smooth muscle myoblast | 1.10e-20 | 43 |
muscle cell | 1.49e-19 | 55 |
muscle precursor cell | 3.59e-19 | 58 |
myoblast | 3.59e-19 | 58 |
multi-potent skeletal muscle stem cell | 3.59e-19 | 58 |
electrically responsive cell | 2.19e-18 | 61 |
electrically active cell | 2.19e-18 | 61 |
vascular associated smooth muscle cell | 8.20e-18 | 32 |
mesodermal cell | 1.11e-16 | 121 |
embryonic cell | 6.91e-11 | 250 |
mesothelial cell | 3.27e-08 | 19 |
skin fibroblast | 6.06e-08 | 23 |
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