FFCP PHASE1:Hg19::chr11:119599468..119599531,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5818|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9706|TSSclassifier=S|UniProt=Q15223|association_with_transcript=-33bp_to_NM_002855,NM_203285,NM_203286,uc001pwu.1,uc001pwv.2,uc001pww.2_5end|coexpression_cluster_id=C3096|description=CAGE_peak_3_at_PVRL1_5end|id=chr11:119599468..119599531,-|ontology_enrichment_celltype=CL:0002076!4.34e-13!43;CL:0000066!2.72e-11!254;CL:0000223!6.28e-09!59;CL:0002368!5.19e-08!13;CL:0002251!7.26e-08!21|ontology_enrichment_celltype_v019=CL:0002076;1.93e-14;42!CL:0002251;1.60e-12;20!CL:0002368;6.61e-12;13!CL:0002159;1.41e-08;14!CL:0000622;1.71e-07;5!CL:0002202;4.55e-07;9!CL:0002632;4.55e-07;9!CL:0000244;7.82e-07;4!CL:0000731;7.82e-07;4|ontology_enrichment_celltype_v019_2=CL:0002076,4.01e-19,42;CL:0000223,2.40e-14,58;CL:0000066,7.72e-13,253;CL:0002251,1.86e-12,20;CL:0002368,7.63e-12,13;CL:0002159,1.33e-08,14;CL:0000622,1.75e-07,5;CL:0002202,4.94e-07,9;CL:0002632,4.94e-07,9;CL:0000244,7.54e-07,4;CL:0000731,7.54e-07,4;CL:0000076,9.47e-07,63|ontology_enrichment_development_v019=CL:0000223;5.55e-08;58|ontology_enrichment_disease=DOID:1749!3.57e-07!14|ontology_enrichment_disease_v019=DOID:1749;1.02e-09;14|ontology_enrichment_disease_v019_2=DOID:1749,8.46e-10,14|ontology_enrichment_uberon=UBERON:0000161!9.32e-08!35;UBERON:0004119!1.50e-07!169;UBERON:0000925!1.50e-07!169;UBERON:0006595!1.50e-07!169;UBERON:0000153!3.29e-07!129;UBERON:0007811!3.29e-07!129;UBERON:0000033!4.46e-07!123;UBERON:0001004!8.95e-07!72|ontology_enrichment_uberon_v019=UBERON:0000486;3.08e-08;12!UBERON:0000365;8.21e-08;5!UBERON:0007196;4.30e-07;15!UBERON:0001558;4.30e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.59e-10,160;UBERON:0000925,8.59e-10,160;UBERON:0006595,8.59e-10,160;UBERON:0000161,1.04e-09,36;UBERON:0000166,6.87e-08,22;UBERON:0000365,8.28e-08,5;UBERON:0000033,1.46e-07,56;UBERON:0001004,3.45e-07,74;UBERON:0007196,3.82e-07,15;UBERON:0001558,3.82e-07,15;UBERON:0003102,4.60e-07,99;UBERON:0000153,6.16e-07,62;UBERON:0007811,6.16e-07,62|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0.631719873426831,0,1.22866968250754,4.88460817580699,0.655324116390517,0.527533956456907,0.123766352960047,0,0.672325146451775,0,1.46062018077475,0,0.984968464614303,0,1.25381888591235,0.286235987131057,0.410623275218653,0,0.916960868975415,1.06730766284929,0.550975469195755,0,0,0.619264493264304,8.27479102031034,9.93979531968225,17.378438477839,0.0774672005803016,0.568676929949686,0.293600439334847,0,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,1.84368859342554,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0,0,0,0.255725123687061,0.722878304769133,0,0.434539556882471,0,0,0.0945348171640679,0.221729397462564,0,0.72038491523742,19.6719455677973,12.977455497455,0,0.870648686496336,0.132957960518865,5.48528435902286,6.86393892936153,4.08603251462521,0.596287222100115,0.860234595106124,1.38856200643038,0,2.09749718104953,1.37559020970034,1.25396979922086,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0.367663080345869,0,0.803697554556718,0.44905874525234,0.450445921933289,0,2.84779697870439,1.83201743930407,0,3.87780264148325,21.8047026071267,0,0.12663051166458,0,0.286836620748814,1.06400514659507,0.560677600142307,1.06748995729705,0.24666754841716,0.933633106199299,0.269421344139376,0.817309515567294,0,0,0.937285727335186,0.624320153660641,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.204154171254893,0.859840221182376,0,0,0.247266929278557,0,0.718618141816238,0,0,0.277064115484183,0,0,0.300476117813194,0.226864366320042,0,0,0.635795703478686,0.600182192168805,0.206105058476878,0,0.37223371266318,0.675105328965065,0.584622030967192,0.252433774244115,0.0920498986422993,0.323292113637624,0.355009592516614,0.201504196455281,0.169560592310488,7.15065156704198,7.36414525595254,6.02289650316908,0.975789649036763,0.530119073285941,0.69716365721711,0.932949495138334,0.504641701751257,0.36497735907583,0,0,0,0,0,0.118306800039844,0.337169380156203,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,2.94848165003288,0,0,0.614942192715568,0.171567810298526,8.9995234035073,8.99214026060957,5.93120937228622,7.96260628363355,0,1.03993478527958,0,0.811512834825538,0.352226082707465,0.288732895522148,0.462985512576611,0,0,0.858486162094873,0,0,0,5.62403003920662,3.35964256397719,4.67857820899875,5.46306988487375,8.4283842169049,16.4854552041041,0,0.352193736052904,0.207328115540772,0.144119953416961,0.50496973370552,0.253991577168676,0.381988425558278,3.51652341630141,1.71072446022705,0.102827492703324,0.300343057843917,0,0.560655421726804,0,0.22001485746285,0.775630294546667,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5818 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9706 | |||
|TSSclassifier=S | |||
|UniProt=Q15223 | |||
|association_with_transcript=-33bp_to_NM_002855,NM_203285,NM_203286,uc001pwu.1,uc001pwv.2,uc001pww.2_5end | |||
|coexpression_cluster_id=C3096 | |||
|description=CAGE_peak_3_at_PVRL1_5end | |||
|id=chr11:119599468..119599531,- | |||
|ontology_enrichment_celltype=CL:0002076!4.34e-13!43;CL:0000066!2.72e-11!254;CL:0000223!6.28e-09!59;CL:0002368!5.19e-08!13;CL:0002251!7.26e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.93e-14;42!CL:0002251;1.60e-12;20!CL:0002368;6.61e-12;13!CL:0002159;1.41e-08;14!CL:0000622;1.71e-07;5!CL:0002202;4.55e-07;9!CL:0002632;4.55e-07;9!CL:0000244;7.82e-07;4!CL:0000731;7.82e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.01e-19,42;CL:0000223,2.40e-14,58;CL:0000066,7.72e-13,253;CL:0002251,1.86e-12,20;CL:0002368,7.63e-12,13;CL:0002159,1.33e-08,14;CL:0000622,1.75e-07,5;CL:0002202,4.94e-07,9;CL:0002632,4.94e-07,9;CL:0000244,7.54e-07,4;CL:0000731,7.54e-07,4;CL:0000076,9.47e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;5.55e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!3.57e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.02e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.46e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000161!9.32e-08!35;UBERON:0004119!1.50e-07!169;UBERON:0000925!1.50e-07!169;UBERON:0006595!1.50e-07!169;UBERON:0000153!3.29e-07!129;UBERON:0007811!3.29e-07!129;UBERON:0000033!4.46e-07!123;UBERON:0001004!8.95e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;3.08e-08;12!UBERON:0000365;8.21e-08;5!UBERON:0007196;4.30e-07;15!UBERON:0001558;4.30e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.59e-10,160;UBERON:0000925,8.59e-10,160;UBERON:0006595,8.59e-10,160;UBERON:0000161,1.04e-09,36;UBERON:0000166,6.87e-08,22;UBERON:0000365,8.28e-08,5;UBERON:0000033,1.46e-07,56;UBERON:0001004,3.45e-07,74;UBERON:0007196,3.82e-07,15;UBERON:0001558,3.82e-07,15;UBERON:0003102,4.60e-07,99;UBERON:0000153,6.16e-07,62;UBERON:0007811,6.16e-07,62 | |||
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| |||
|short_description=p3@PVRL1 | |||
}} |
Revision as of 16:10, 10 September 2013
Short description: | p3@PVRL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PVRL1_5end |
Coexpression cluster: | C3096_Urothelial_Small_Corneal_Prostate_Esophageal_Bronchial_cervical |
Association with transcript: | -33bp_to_NM_002855, NM_203285, NM_203286, uc001pwu.1, uc001pwv.2, uc001pww.2_5end |
EntrezGene: | PVRL1 |
HGNC: | 9706 |
UniProt: | Q15223 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.01e-19 | 42 |
endodermal cell | 2.40e-14 | 58 |
epithelial cell | 7.72e-13 | 253 |
epithelial cell of alimentary canal | 1.86e-12 | 20 |
respiratory epithelial cell | 7.63e-12 | 13 |
general ecto-epithelial cell | 1.33e-08 | 14 |
acinar cell | 1.75e-07 | 5 |
epithelial cell of tracheobronchial tree | 4.94e-07 | 9 |
epithelial cell of lower respiratory tract | 4.94e-07 | 9 |
transitional epithelial cell | 7.54e-07 | 4 |
urothelial cell | 7.54e-07 | 4 |
squamous epithelial cell | 9.47e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.59e-10 | 160 |
endoderm | 8.59e-10 | 160 |
presumptive endoderm | 8.59e-10 | 160 |
orifice | 1.04e-09 | 36 |
oral opening | 6.87e-08 | 22 |
urothelium | 8.28e-08 | 5 |
head | 1.46e-07 | 56 |
respiratory system | 3.45e-07 | 74 |
tracheobronchial tree | 3.82e-07 | 15 |
lower respiratory tract | 3.82e-07 | 15 |
surface structure | 4.60e-07 | 99 |
anterior region of body | 6.16e-07 | 62 |
craniocervical region | 6.16e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.46e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.