FFCP PHASE1:Hg19::chr10:95360526..95360579,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5950|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=9922|TSSclassifier=S|UniProt=|association_with_transcript=-40bp_to_ENST00000471333_5end|coexpression_cluster_id=C5|description=CAGE_peak_5_at_RBP4_5end|id=chr10:95360526..95360579,-|ontology_enrichment_celltype=CL:0000136!1.55e-11!15;CL:0000181!3.76e-09!12;CL:0000417!3.76e-09!12;CL:0000668!3.76e-09!12;CL:0000414!3.76e-09!12;CL:0000412!3.76e-09!12;CL:0000182!3.76e-09!12;CL:0000135!1.20e-07!3;CL:0000386!1.20e-07!3;CL:0000388!1.20e-07!3|ontology_enrichment_celltype_v019=CL:0000136;5.90e-27;13!CL:0000182;4.95e-22;12!CL:0002521;8.26e-11;3|ontology_enrichment_celltype_v019_2=CL:0000136,3.30e-23,15;CL:0000182,4.44e-22,12;CL:0002521,6.29e-11,3;CL:0000223,4.02e-07,58|ontology_enrichment_development_v019=UBERON:0004161;7.57e-17;11!UBERON:0009497;3.10e-14;13|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.77e-18!115;UBERON:0002780!1.04e-16!41;UBERON:0001890!1.04e-16!41;UBERON:0006240!1.04e-16!41;UBERON:0003080!3.47e-16!42;UBERON:0001893!8.75e-15!34;UBERON:0001049!2.89e-14!57;UBERON:0005068!2.89e-14!57;UBERON:0006241!2.89e-14!57;UBERON:0007135!2.89e-14!57;UBERON:0001869!3.25e-14!32;UBERON:0002791!1.16e-13!33;UBERON:0002616!1.41e-13!59;UBERON:0002020!3.29e-13!34;UBERON:0003528!3.29e-13!34;UBERON:0000955!6.70e-13!69;UBERON:0006238!6.70e-13!69;UBERON:0002619!1.32e-12!22;UBERON:0001950!5.29e-12!20;UBERON:0005743!5.01e-11!86;UBERON:0000956!8.65e-11!25;UBERON:0000203!8.65e-11!25;UBERON:0001017!8.66e-11!82;UBERON:0003056!9.79e-11!61;UBERON:0000073!2.34e-09!94;UBERON:0001016!2.34e-09!94;UBERON:0003075!3.21e-09!86;UBERON:0007284!3.21e-09!86;UBERON:0002107!6.27e-09!19;UBERON:0006925!6.27e-09!19;UBERON:0008836!6.27e-09!19;UBERON:0002346!1.54e-08!90;UBERON:0009497!1.10e-07!25;UBERON:0000015!1.10e-07!25;UBERON:0002423!1.10e-07!25;UBERON:0006235!1.10e-07!25;UBERON:0004161!1.10e-07!25;UBERON:0000043!1.20e-07!3;UBERON:0008835!1.94e-07!22;UBERON:0003894!1.94e-07!22;UBERON:0004905!3.49e-07!5;UBERON:0000982!3.49e-07!5;UBERON:0004770!3.49e-07!5;UBERON:0009854!4.98e-07!23;UBERON:0001871!7.95e-07!7|ontology_enrichment_uberon_v019=UBERON:0002107;2.12e-24;19!UBERON:0006925;2.12e-24;19!UBERON:0002368;2.96e-19;33!UBERON:0002423;2.74e-18;25!UBERON:0000007;3.43e-16;2!UBERON:0002365;5.01e-14;31!UBERON:0002330;5.01e-14;31!UBERON:0000949;2.52e-12;43!UBERON:0002190;8.26e-11;3!UBERON:0003296;1.53e-08;4!UBERON:0010133;1.53e-08;4!UBERON:0002530;4.00e-08;57!UBERON:0002072;8.05e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.93e-24,19;UBERON:0006925,1.93e-24,19;UBERON:0008836,1.93e-24,19;UBERON:0008835,5.80e-21,22;UBERON:0003894,5.80e-21,22;UBERON:0009854,5.26e-20,23;UBERON:0002368,5.54e-20,35;UBERON:0007499,2.56e-18,25;UBERON:0009497,2.56e-18,25;UBERON:0000015,2.56e-18,25;UBERON:0002423,2.56e-18,25;UBERON:0006235,2.56e-18,25;UBERON:0004161,2.56e-18,25;UBERON:0009856,1.43e-17,26;UBERON:0000007,3.44e-16,2;UBERON:0000949,3.55e-15,45;UBERON:0002365,1.46e-14,31;UBERON:0002330,1.46e-14,31;UBERON:0002530,1.58e-13,59;UBERON:0003929,3.02e-12,54;UBERON:0002190,6.29e-11,3;UBERON:0002417,9.07e-09,60;UBERON:0000916,9.07e-09,60;UBERON:0003296,1.53e-08,4;UBERON:0010133,1.53e-08,4;UBERON:0005172,6.92e-08,54;UBERON:0005173,6.92e-08,54;UBERON:0005911,1.66e-07,82;UBERON:0002072,6.85e-07,5|phase1_expression=0,2.5692062866918,0,1.0007329835313,0.446961094427288,0,2.53299878168311,0,1.82829939739887,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,10.8110993834539,9.45263850690247,0,1.59884970106048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2010601531245,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0.214840489736547,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47775344708365,0.329294892959902,0,0,0,0,0,7.71979166369589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,1.9882952955326,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0.969332746095218,0.27830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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5950 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9922 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-40bp_to_ENST00000471333_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_5_at_RBP4_5end | |||
|id=chr10:95360526..95360579,- | |||
|ontology_enrichment_celltype=CL:0000136!1.55e-11!15;CL:0000181!3.76e-09!12;CL:0000417!3.76e-09!12;CL:0000668!3.76e-09!12;CL:0000414!3.76e-09!12;CL:0000412!3.76e-09!12;CL:0000182!3.76e-09!12;CL:0000135!1.20e-07!3;CL:0000386!1.20e-07!3;CL:0000388!1.20e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.90e-27;13!CL:0000182;4.95e-22;12!CL:0002521;8.26e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.30e-23,15;CL:0000182,4.44e-22,12;CL:0002521,6.29e-11,3;CL:0000223,4.02e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.57e-17;11!UBERON:0009497;3.10e-14;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.77e-18!115;UBERON:0002780!1.04e-16!41;UBERON:0001890!1.04e-16!41;UBERON:0006240!1.04e-16!41;UBERON:0003080!3.47e-16!42;UBERON:0001893!8.75e-15!34;UBERON:0001049!2.89e-14!57;UBERON:0005068!2.89e-14!57;UBERON:0006241!2.89e-14!57;UBERON:0007135!2.89e-14!57;UBERON:0001869!3.25e-14!32;UBERON:0002791!1.16e-13!33;UBERON:0002616!1.41e-13!59;UBERON:0002020!3.29e-13!34;UBERON:0003528!3.29e-13!34;UBERON:0000955!6.70e-13!69;UBERON:0006238!6.70e-13!69;UBERON:0002619!1.32e-12!22;UBERON:0001950!5.29e-12!20;UBERON:0005743!5.01e-11!86;UBERON:0000956!8.65e-11!25;UBERON:0000203!8.65e-11!25;UBERON:0001017!8.66e-11!82;UBERON:0003056!9.79e-11!61;UBERON:0000073!2.34e-09!94;UBERON:0001016!2.34e-09!94;UBERON:0003075!3.21e-09!86;UBERON:0007284!3.21e-09!86;UBERON:0002107!6.27e-09!19;UBERON:0006925!6.27e-09!19;UBERON:0008836!6.27e-09!19;UBERON:0002346!1.54e-08!90;UBERON:0009497!1.10e-07!25;UBERON:0000015!1.10e-07!25;UBERON:0002423!1.10e-07!25;UBERON:0006235!1.10e-07!25;UBERON:0004161!1.10e-07!25;UBERON:0000043!1.20e-07!3;UBERON:0008835!1.94e-07!22;UBERON:0003894!1.94e-07!22;UBERON:0004905!3.49e-07!5;UBERON:0000982!3.49e-07!5;UBERON:0004770!3.49e-07!5;UBERON:0009854!4.98e-07!23;UBERON:0001871!7.95e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.12e-24;19!UBERON:0006925;2.12e-24;19!UBERON:0002368;2.96e-19;33!UBERON:0002423;2.74e-18;25!UBERON:0000007;3.43e-16;2!UBERON:0002365;5.01e-14;31!UBERON:0002330;5.01e-14;31!UBERON:0000949;2.52e-12;43!UBERON:0002190;8.26e-11;3!UBERON:0003296;1.53e-08;4!UBERON:0010133;1.53e-08;4!UBERON:0002530;4.00e-08;57!UBERON:0002072;8.05e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.93e-24,19;UBERON:0006925,1.93e-24,19;UBERON:0008836,1.93e-24,19;UBERON:0008835,5.80e-21,22;UBERON:0003894,5.80e-21,22;UBERON:0009854,5.26e-20,23;UBERON:0002368,5.54e-20,35;UBERON:0007499,2.56e-18,25;UBERON:0009497,2.56e-18,25;UBERON:0000015,2.56e-18,25;UBERON:0002423,2.56e-18,25;UBERON:0006235,2.56e-18,25;UBERON:0004161,2.56e-18,25;UBERON:0009856,1.43e-17,26;UBERON:0000007,3.44e-16,2;UBERON:0000949,3.55e-15,45;UBERON:0002365,1.46e-14,31;UBERON:0002330,1.46e-14,31;UBERON:0002530,1.58e-13,59;UBERON:0003929,3.02e-12,54;UBERON:0002190,6.29e-11,3;UBERON:0002417,9.07e-09,60;UBERON:0000916,9.07e-09,60;UBERON:0003296,1.53e-08,4;UBERON:0010133,1.53e-08,4;UBERON:0005172,6.92e-08,54;UBERON:0005173,6.92e-08,54;UBERON:0005911,1.66e-07,82;UBERON:0002072,6.85e-07,5 | |||
|phase1_expression=0,2.5692062866918,0,1.0007329835313,0.446961094427288,0,2.53299878168311,0,1.82829939739887,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,10.8110993834539,9.45263850690247,0,1.59884970106048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2010601531245,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0.214840489736547,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47775344708365,0.329294892959902,0,0,0,0,0,7.71979166369589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,1.9882952955326,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.316553979779393,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,1.41809728153003,1.7307330260045,1.41547442093788,0.295282444544246,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.9052381444726,14.5757577803443,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,5.44017803369474,1.0027595760908,1.53172788381731,0.983617892129413,0,0,0.610131324509816,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642292250964595,0,0,0.41023272848151,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0.992422356778588,0,0,0,0,3.64179362541979,3.18727067891817,0,0,0,0.135939465953663,0.263091094251396,0,0,0.39246546425257,0.471346769748006,0,0,0,0,0.500335809236594,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0.447421727191169,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0.436350690340377,1.5870805215462,0.371995018166751,0.462175628631418,2.16313281061895,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0.217716747896961,0,0,0.358611026963382,0.665320713092027,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p5@RBP4 | |||
}} |
Revision as of 15:03, 10 September 2013
Short description: | p5@RBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RBP4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -40bp_to_ENST00000471333_5end |
EntrezGene: | RBP4 |
HGNC: | 9922 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.30e-23 | 15 |
hepatocyte | 4.44e-22 | 12 |
subcutaneous fat cell | 6.29e-11 | 3 |
endodermal cell | 4.02e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.93e-24 | 19 |
digestive gland | 1.93e-24 | 19 |
liver bud | 1.93e-24 | 19 |
hepatic diverticulum | 5.80e-21 | 22 |
liver primordium | 5.80e-21 | 22 |
digestive tract diverticulum | 5.26e-20 | 23 |
endocrine gland | 5.54e-20 | 35 |
epithelial sac | 2.56e-18 | 25 |
epithelium of foregut-midgut junction | 2.56e-18 | 25 |
anatomical boundary | 2.56e-18 | 25 |
hepatobiliary system | 2.56e-18 | 25 |
foregut-midgut junction | 2.56e-18 | 25 |
septum transversum | 2.56e-18 | 25 |
sac | 1.43e-17 | 26 |
pituitary gland | 3.44e-16 | 2 |
endocrine system | 3.55e-15 | 45 |
exocrine gland | 1.46e-14 | 31 |
exocrine system | 1.46e-14 | 31 |
gland | 1.58e-13 | 59 |
gut epithelium | 3.02e-12 | 54 |
subcutaneous adipose tissue | 6.29e-11 | 3 |
abdominal segment of trunk | 9.07e-09 | 60 |
abdomen | 9.07e-09 | 60 |
gland of diencephalon | 1.53e-08 | 4 |
neuroendocrine gland | 1.53e-08 | 4 |
abdomen element | 6.92e-08 | 54 |
abdominal segment element | 6.92e-08 | 54 |
endo-epithelium | 1.66e-07 | 82 |
hypodermis | 6.85e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.