FFCP PHASE1:Hg19::chr10:71562341..71562356,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1305 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |||
|TSSclassifier=S | |||
|UniProt=Q5TAT6 | |||
|association_with_transcript=33bp_to_M59217_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_5_at_COL13A1_5end | |||
|id=chr10:71562341..71562356,+ | |||
|ontology_enrichment_celltype=CL:0002274!1.12e-14!5;CL:0000457!1.12e-14!5;CL:0002191!1.12e-14!5;CL:0000097!1.12e-14!5;CL:0000831!1.12e-14!5;CL:0002028!1.12e-14!5;CL:0000708!5.61e-08!3;CL:0000163!6.54e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000097;2.46e-108;5!CL:0000163;1.87e-60;9!CL:0002591;3.67e-23;1!CL:0000151;3.94e-14;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.41e-108,5;CL:0002028,1.41e-108,5;CL:0000163,1.37e-60,9;CL:0002591,6.40e-23,1;CL:0000151,2.03e-15,36;CL:0000839,2.30e-08,66;CL:0000557,3.04e-08,67;CL:0000766,1.10e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.00e-67;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004733!2.28e-10!12;UBERON:0002028!2.28e-10!12;UBERON:0007277!2.28e-10!12;UBERON:0004732!1.78e-09!13;UBERON:0003076!4.74e-08!15;UBERON:0003057!4.74e-08!15;UBERON:0002616!5.33e-08!59;UBERON:0003210!5.61e-08!3;UBERON:0002037!6.56e-08!6;UBERON:0006215!6.56e-08!6;UBERON:0002680!9.04e-08!9;UBERON:0001895!9.04e-08!9;UBERON:0010092!9.04e-08!9;UBERON:0000477!6.50e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;5.37e-34;6!UBERON:0002680;5.99e-23;9!UBERON:0001895;5.99e-23;9!UBERON:0004733;2.08e-17;12!UBERON:0002028;2.08e-17;12!UBERON:0004732;3.99e-16;13!UBERON:0000078;2.74e-12;2!UBERON:0002012;2.74e-12;2!UBERON:0008886;2.74e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,5.37e-34,6;UBERON:0006215,5.37e-34,6;UBERON:0002680,5.99e-23,9;UBERON:0001895,5.99e-23,9;UBERON:0010092,5.99e-23,9;UBERON:0004733,2.09e-17,12;UBERON:0002028,2.09e-17,12;UBERON:0007277,2.09e-17,12;UBERON:0004732,3.99e-16,13;UBERON:0003076,4.52e-14,15;UBERON:0003057,4.52e-14,15;UBERON:0000078,3.62e-12,2;UBERON:0007497,3.62e-12,2;UBERON:0003643,3.62e-12,2;UBERON:0003504,3.62e-12,2;UBERON:0003469,3.62e-12,2;UBERON:0003496,3.62e-12,2;UBERON:0002012,3.62e-12,2;UBERON:0008886,3.62e-12,2;UBERON:0007303,3.62e-12,2;UBERON:0002061,3.62e-12,2;UBERON:0005432,3.62e-12,2;UBERON:0004363,3.62e-12,2;UBERON:0004145,1.51e-08,3;UBERON:0002371,2.73e-07,76;UBERON:0001474,9.07e-07,82 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0.211931901159562,0.300091096084402,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,1.47798971368783,1.14462964217194,1.65862492432618,1.29707958075265,1.13618190083742,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.308419387605311,0,0,0,0.232420756919918,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0,0,0,0.42793898803392,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2065389053667,10.0627126537414,2.65992857058193,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39669780522807,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.554645257684261,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0,0,0.159296767163702,0,0,0.414706207840855,0,0,0.150257608997218,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0.163771917510097,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@COL13A1 | |||
}} |
Revision as of 14:09, 10 September 2013
Short description: | p5@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_COL13A1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 33bp_to_M59217_5end |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | Q5TAT6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.41e-108 | 5 |
basophil mast progenitor cell | 1.41e-108 | 5 |
endocrine cell | 1.37e-60 | 9 |
smooth muscle cell of the pulmonary artery | 6.40e-23 | 1 |
secretory cell | 2.03e-15 | 36 |
myeloid lineage restricted progenitor cell | 2.30e-08 | 66 |
granulocyte monocyte progenitor cell | 3.04e-08 | 67 |
myeloid leukocyte | 1.10e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.37e-34 | 6 |
rhombic lip | 5.37e-34 | 6 |
regional part of metencephalon | 5.99e-23 | 9 |
metencephalon | 5.99e-23 | 9 |
future metencephalon | 5.99e-23 | 9 |
segmental subdivision of hindbrain | 2.09e-17 | 12 |
hindbrain | 2.09e-17 | 12 |
presumptive hindbrain | 2.09e-17 | 12 |
segmental subdivision of nervous system | 3.99e-16 | 13 |
posterior neural tube | 4.52e-14 | 15 |
chordal neural plate | 4.52e-14 | 15 |
mixed ectoderm/mesoderm/endoderm-derived structure | 3.62e-12 | 2 |
developing epithelial placode | 3.62e-12 | 2 |
respiratory system arterial blood vessel | 3.62e-12 | 2 |
respiratory system blood vessel | 3.62e-12 | 2 |
respiratory system artery | 3.62e-12 | 2 |
head blood vessel | 3.62e-12 | 2 |
pulmonary artery | 3.62e-12 | 2 |
pulmonary vascular system | 3.62e-12 | 2 |
pharyngeal vasculature | 3.62e-12 | 2 |
truncus arteriosus | 3.62e-12 | 2 |
aortic sac | 3.62e-12 | 2 |
pharyngeal arch artery | 3.62e-12 | 2 |
outflow tract | 1.51e-08 | 3 |
bone marrow | 2.73e-07 | 76 |
bone element | 9.07e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.