Personal tools

Template:Known motif: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 229: Line 229:
* name    :[[motifname::{{{representative_motif_name}}}]]
* name    :[[motifname::{{{representative_motif_name}}}]]
* score    :[[motifscore::{{{score}}}]]<br>
* score    :[[motifscore::{{{score}}}]]<br>
* External refs:[http://www.ncbi.nlm.nih.gov/gene?term={{{entrez_gene_id}}}  EntrezGene:[[GeneID::{{{entrez_gene_id}}}]]] <html>&nbsp;&nbsp;</html>UniProt:[http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} {{{uniprot_entry_name}}}]
* External refs:[http://www.ncbi.nlm.nih.gov/gene?term={{{entrez_gene_id}}}  EntrezGene:[[GeneID::{{{entrez_gene_id}}}]]] <html>&nbsp;&nbsp;</html>[http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} UniProt:{{{uniprot_entry_name}}}]


<!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}-->  
<!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}-->  

Revision as of 16:11, 3 June 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.


Motif matrix
{{{PWM}}}

Sub Motif Members