NonredundantMotifs:18: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1; | |PWM=PO;A;C;G;T!1;59.416752;322.053167;304.611028;112.638872!2;159.912019;518.054959;118.385809;2.367032!3;19.39672;77.502905;551.647648000001;150.172546!4;0.89733;780.717449000001;15.409854;1.695186!5;794.265789;2.2036;2.25043;0!6;20.213668;4.484537;774.021614000001;0!7;8.117062;695.754442;91.817878;3.030437!8;41.53222;77.5772939999999;5.353235;674.257070000001!9;0;5.967935;783.563857000001;9.188027!10;7.808537;580.880055;119.762131;90.269096!11;119.234771;4.811321;421.96565;252.708077!12;20.482221;346.782235;255.499925;175.955438 | ||
|entrez_gene_id= | |entrez_gene_id=4807,4808 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:MYOG_f1~MYF6_f1~HTF4_f1~MYOD1_f1~HEN1_si~TFAP4_si /HOMER:TCF3_proBcell-E2A-ChIP-Seq~TCF12_GM12878-Tcf12-ChIP-Seq~MYOD1_Myotube-MyoD-ChIP-Seq /JASPAR:MA0055.1;Myf~MA0048.1;NHLH1 /SWISSREGULON:TCF4_dimer.p2~NHLH1,2.p2~TFAP4.p2~MYFfamily.p2 /UNIPROBE:Ascl2_primary;SCI09 | ||
|name= | |name=non-redundant18 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id= | |representative_motif_id=NHLH1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=NHLH1,2 | ||
|score=1. | |score=1.4298438066596664 | ||
|uniprot_entry_name= | |uniprot_entry_name=NHLH1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 15:55, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant18
- db :SWISSREGULON
- Id :NHLH1,2.p2
- name :NHLH1,2
- score :1.4298438066596664
- External refs:
- Internal refs:
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Sub Motif Members
