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NonredundantMotifs:197: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;6.353954;70.219248;58.945489;221.293957!2;8.292344;24.064961;25.388361;299.066982!3;127.406121;59.316835;113.518415;56.571277!4;64.474348;37.70863;57.117691;197.511979!5;131.720616;6.224415;2.238855;216.628762!6;43.402208;58.750761;31.811097;222.848582!7;56.721611;40.767912;41.919046;217.404079!8;56.775244;28.666724;140.001467;131.369213!9;125.979164;62.667215;66.815829;101.35044!10;141.584537;54.756069;12.679896;147.792146!11;71.567685;6.635921;130.380918;148.228124!12;58.62353;96.07166;84.404128;117.71333!13;6.992406;3.646797;3.096037;343.077408!14;327.531666;3.062317;11.091839;15.126826!15;350.348686;0.906712;1.450552;4.106698!16;339.646492;1.480485;4.737697;10.947974!17;93.047186;33.369882;135.992922;94.402658!18;58.82549;90.968013;22.685806;184.333339!19;79.424222;19.550309;3.394784;254.443333!20;35.3438;9.774883;57.379429;254.314536!21;78.959605;1.987839;111.697178;164.168026!22;208.36418;2.218561;73.270285;72.959622!23;93.4063789999999;49.293226;19.283613;194.82943!24;33.141906;131.411888;2.907642;189.351212!25;115.356534;0.900617;21.598601;218.956896!26;97.56254;21.847211;152.109435;85.293462!27;56.960341;31.675828;32.105449;236.07103!28;40.038311;21.954129;51.777028;243.04318!29;7.907955;138.384921;55.104528;155.415244
|PWM=PO;A;C;G;T!1;6.353954;70.219248;58.945489;221.293957!2;8.292344;24.064961;25.388361;299.066982!3;127.406121;59.316835;113.518415;56.571277!4;64.474348;37.70863;57.117691;197.511979!5;131.720616;6.224415;2.238855;216.628762!6;43.402208;58.750761;31.811097;222.848582!7;56.721611;40.767912;41.919046;217.404079!8;56.775244;28.666724;140.001467;131.369213!9;125.979164;62.667215;66.815829;101.35044!10;141.584537;54.756069;12.679896;147.792146!11;71.567685;6.635921;130.380918;148.228124!12;58.62353;96.07166;84.404128;117.71333!13;6.992406;3.646797;3.096037;343.077408!14;327.531666;3.062317;11.091839;15.126826!15;350.348686;0.906712;1.450552;4.106698!16;339.646492;1.480485;4.737697;10.947974!17;93.047186;33.369882;135.992922;94.402658!18;58.82549;90.968013;22.685806;184.333339!19;79.424222;19.550309;3.394784;254.443333!20;35.3438;9.774883;57.379429;254.314536!21;78.959605;1.987839;111.697178;164.168026!22;208.36418;2.218561;73.270285;72.959622!23;93.4063789999999;49.293226;19.283613;194.82943!24;33.141906;131.411888;2.907642;189.351212!25;115.356534;0.900617;21.598601;218.956896!26;97.56254;21.847211;152.109435;85.293462!27;56.960341;31.675828;32.105449;236.07103!28;40.038311;21.954129;51.777028;243.04318!29;7.907955;138.384921;55.104528;155.415244
|entrez_gene_id=
|entrez_gene_id=ZBTB16
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ZBTB16.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ZBTB16.p2
|name=known197
|name=non-redundant197
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=ZBTB16.p2
|representative_motif_id=ZBTB16.p2
|representative_motif_name=  
|representative_motif_name=ZBTB16
|score=0.19443196959426917
|score=0.19443196959426917
|uniprot_entry_name=
|uniprot_entry_name=ZBTB16
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant197
  • db :SWISSREGULON
  • Id :ZBTB16.p2
  • name :ZBTB16
  • score :0.19443196959426917
  • External refs:
EntrezGene:ZBTB16
UniProt:ZBTB16

  • Internal refs:
EntrezGene:ZBTB16


Motif matrix
POACGT
16.35395470.21924858.945489221.293957
28.29234424.06496125.388361299.066982
3127.40612159.316835113.51841556.571277
464.47434837.7086357.117691197.511979
5131.7206166.2244152.238855216.628762
643.40220858.75076131.811097222.848582
756.72161140.76791241.919046217.404079
856.77524428.666724140.001467131.369213
9125.97916462.66721566.815829101.35044
10141.58453754.75606912.679896147.792146
1171.5676856.635921130.380918148.228124
1258.6235396.0716684.404128117.71333
136.9924063.6467973.096037343.077408
14327.5316663.06231711.09183915.126826
15350.3486860.9067121.4505524.106698
16339.6464921.4804854.73769710.947974
1793.04718633.369882135.99292294.402658
1858.8254990.96801322.685806184.333339
1979.42422219.5503093.394784254.443333
2035.34389.77488357.379429254.314536
2178.9596051.987839111.697178164.168026
22208.364182.21856173.27028572.959622
2393.406378999999949.29322619.283613194.82943
2433.141906131.4118882.907642189.351212
25115.3565340.90061721.598601218.956896
2697.5625421.847211152.10943585.293462
2756.96034131.67582832.105449236.07103
2840.03831121.95412951.777028243.04318
297.907955138.38492155.104528155.415244

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:197&oldid=2579461"