NonredundantMotifs:192: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=8820
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HESX1_f1
|name=known192
|representative_motif_db=HOCOMOCO
|representative_motif_id=...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;3.514285714285712;1.571428571428568;1.457142857142856;1.457142857142856!2;0.0;2.057142857142856;2.857142857142856;3.085714285714288!3;0.0;4.114285714285712;3.885714285714288;0.0!4;1.028571428571432;4.114285714285712;0.0;2.857142857142856!5;0.0;0.0;8.0;0.0!6;1.142857142857144;0.0;5.828571428571432;1.028571428571432!7;1.028571428571432;6.971428571428568;0.0;0.0!8;3.885714285714288;1.028571428571432;0.0;3.085714285714288!9;3.2;4.8;0.0;0.0!10;2.171428571428568;1.028571428571432;3.771428571428568;1.028571428571432!11;0.0;0.914285714285712;0.0;7.085714285714288!12;3.085714285714288;0.0;3.771428571428568;1.142857142857144!13;2.971428571428568;0.914285714285712;4.114285714285712;0.0!14;2.171428571428568;3.771428571428568;1.028571428571432;1.028571428571432!15;2.971428571428568;3.085714285714288;0.914285714285712;1.028571428571432!16;0.2571428571428568;1.285714285714288;1.171428571428568;5.285714285714288 | |||
|entrez_gene_id=8820 | |entrez_gene_id=8820 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HESX1_f1 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:HESX1_f1 | ||
|name= | |name=non-redundant192 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=HESX1_f1 | |representative_motif_id=HESX1_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:22, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant192
- db :HOCOMOCO
- Id :HESX1_f1
- name :
- score :0.8649196242972365
- External refs:
- Internal refs:
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Sub Motif Members
