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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.0;1.1179636129823016;9.31688732884248;1.565149058175228!2;1.565149058175228;0.0;2.571316309859292;7.86353463196548!3;2.124130864666368;0.0;9.875869135333632;0.0!4;3.6273454623392283;3.7391418236374676;1.453352696876988;3.1801600171463162!5;4.298123630128608;0.0;7.70187636987138;0.0!6;0.0;2.01233450336814;1.1179636129823016;8.869701883649554!7;6.919301840783771;0.0;5.080698159216228;0.0!8;0.0;7.81367273116962;3.6273454623392283;0.5589818064911508!9;0.0;0.0;12.0;0.0!10;1.565149058175228;0.0;0.0;10.434850941824772!11;0.0;2.4595199485610637;8.422516438456633;1.1179636129823016!12;0.5589818064911508;1.7887417807716839;6.024930950397936;3.6273454623392283!13;0.0;1.453352696876988;10.546647303123013;0.0
|entrez_gene_id=2034
|entrez_gene_id=2034
|motif_cluster_2013_march_motif_members= /HOCOMOCO:EPAS1_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:EPAS1_si
|name=known156
|name=non-redundant156
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=EPAS1_si
|representative_motif_id=EPAS1_si
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant156
  • db :HOCOMOCO
  • Id :EPAS1_si
  • name  :
  • score :0.664673842150266
  • External refs:
EntrezGene:2034
UniProt:2034

  • Internal refs:
EntrezGene:2034


Motif matrix
P0ACGT
10.01.11796361298230169.316887328842481.565149058175228
21.5651490581752280.02.5713163098592927.86353463196548
32.1241308646663680.09.8758691353336320.0
43.62734546233922833.73914182363746761.4533526968769883.1801600171463162
54.2981236301286080.07.701876369871380.0
60.02.012334503368141.11796361298230168.869701883649554
76.9193018407837710.05.0806981592162280.0
80.07.813672731169623.62734546233922830.5589818064911508
90.00.012.00.0
101.5651490581752280.00.010.434850941824772
110.02.45951994856106378.4225164384566331.1179636129823016
120.55898180649115081.78874178077168396.0249309503979363.6273454623392283
130.01.45335269687698810.5466473031230130.0

Sub Motif Members