NonredundantMotifs:114: Difference between revisions
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|entrez_gene_id=10009
|motif_cluster_2013_march_motif_members= /HOMER:ZBTB33_GM12878-ZBTB33-ChIP-Seq /HOCOMOCO:KAISO_f1
|name=known114
|representative_moti...") |
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;20;26;94;15!2;34;23;87;11!3;54;41;34;26!4;5;11;6;133!5;14;136;5;0!6;2;15;8;130!7;0;155;0;0!8;0;0;152;3!9;2;151;0;2!10;0;0;155;0!11;133;9;11;2!12;0;8;135;12!13;141;0;12;2!14;63;29;32;31!15;14;84;29;28 | |||
|entrez_gene_id=10009 | |entrez_gene_id=10009 | ||
|motif_cluster_2013_march_motif_members= /HOMER:ZBTB33_GM12878-ZBTB33-ChIP- | |motif_cluster_2013_march_motif_members= /HOCOMOCO:KAISO_f1 /HOMER:ZBTB33_GM12878-ZBTB33-ChIP-Seq | ||
|name= | |name=non-redundant114 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=ZBTB33_GM12878-ZBTB33-ChIP-Seq | |representative_motif_id=ZBTB33_GM12878-ZBTB33-ChIP-Seq | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant114
- db :HOMER
- Id :ZBTB33_GM12878-ZBTB33-ChIP-Seq
- name :
- score :0.4140271772553464
- External refs:
- Internal refs:
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Sub Motif Members
