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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.146334023119284;0.312325597002158;0.244280601437075;0.297059778441483!2;0.493155383150446;0.0926092319702565;0.162506333314667;0.25172905156463!3;0.503592857967289;0.0598625691467358;0.0775608807031628;0.358983692182812!4;0.763321236911991;0.0152640847274256;0.213113532750624;0.00830114560995977!5;0.0124152933433829;0.0259324823928593;0.94550161178228;0.0161506124814777!6;0.00671265218803224;0.0152208224592375;0.95009806626886;0.0279684590838698!7;0.0624149295728282;0.834302710434987;0.0545000523171742;0.048782307675011!8;0.011009794281707;0.0206765064998617;0.928820571547922;0.0394931276705095!9;0.0127852825584847;0.0241624261199451;0.145821531650822;0.817230759670749!10;0.133595087758648;0.0339621383800899;0.787876170857959;0.0445666030033028!11;0.140696831265335;0.180480862797504;0.428252547296935;0.250569758640227!12;0.0362805809769257;0.806411569004042;0.0335104472596395;0.123797402759393!13;0.157910409531115;0.408607000263642;0.122427178461432;0.31105541174381!14;0.292185093316507;0.260016972273344;0.197515406696606;0.250282527713542!15;0.251107068488547;0.124479516647001;0.359446652983103;0.264966761881349
|entrez_gene_id=6671
|entrez_gene_id=6671
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXN1.p2 /UNIPROBE:Sp4_secondary;SCI09
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXN1.p2 /UNIPROBE:Sp4_secondary;SCI09
|name=known100
|name=non-redundant100
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Sp4_secondary
|representative_motif_id=Sp4_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant100
  • db :UNIPROBE
  • Id :Sp4_secondary
  • name :SCI09
  • score :1.1796062082368315
  • External refs:
EntrezGene:6671
UniProt:6671

  • Internal refs:
EntrezGene:6671


Motif matrix
P0ACGT
10.1463340231192840.3123255970021580.2442806014370750.297059778441483
20.4931553831504460.09260923197025650.1625063333146670.25172905156463
30.5035928579672890.05986256914673580.07756088070316280.358983692182812
40.7633212369119910.01526408472742560.2131135327506240.00830114560995977
50.01241529334338290.02593248239285930.945501611782280.0161506124814777
60.006712652188032240.01522082245923750.950098066268860.0279684590838698
70.06241492957282820.8343027104349870.05450005231717420.048782307675011
80.0110097942817070.02067650649986170.9288205715479220.0394931276705095
90.01278528255848470.02416242611994510.1458215316508220.817230759670749
100.1335950877586480.03396213838008990.7878761708579590.0445666030033028
110.1406968312653350.1804808627975040.4282525472969350.250569758640227
120.03628058097692570.8064115690040420.03351044725963950.123797402759393
130.1579104095311150.4086070002636420.1224271784614320.31105541174381
140.2921850933165070.2600169722733440.1975154066966060.250282527713542
150.2511070684885470.1244795166470010.3594466529831030.264966761881349

Sub Motif Members